# command:# Read 3 alphabets from /projects/compbio/lib/alphabet/chi.alphabet
# command:# Prefix for input files set to /cse/faculty/karplus/dna/predict-2nd/testing/
# command:# Prefix for output files set to /cse/faculty/karplus/dna/predict-2nd/testing/chi/
# command:# Neural network set to IDaaHr-5-15-7-15-9-15-13-chi1-3-empty.net
# command:# Neural network set to t2k-5631-IDaaHr-5-15-7-15-9-15-13-chi1-3-from-empty.net
# command:# Learning params read from params/16-dec-01-anneal
# command:# Initializing Weights for chi1
# Initializing Bias for chi1
# Initializing Gain for chi1
# Initializing Weights for third_layer
# Initializing Bias for third_layer
# Initializing Gain for third_layer
# Initializing Weights for second_layer
# Initializing Bias for second_layer
# Initializing Gain for second_layer
# Initializing Weights for FirstLayer
# Initializing Bias for FirstLayer
# Initializing Gain for FirstLayer
# Network initialization done
# command:# command:# Prefix for input files set to /cse/faculty/karplus/dna/predict-2nd/testing/training-data/
# command:# reading script from file t2k-5631.t2k-thin90-chi1-3
# Prefix for input files set to 
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qgrA/nostruct-align/1qgrA.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1q/1qgrA/info/1qgrA.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qgrA/info/1qgrA.stride-mixed.chi1-3, have 871 columns in 1 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qgrB/nostruct-align/1qgrB.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1q/1qgrB/info/1qgrB.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qgrB/info/1qgrB.stride-mixed.chi1-3, have 895 columns in 2 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2p/2pil/nostruct-align/2pil.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/2p/2pil/info/2pil.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/2p/2pil/info/2pil.stride-mixed.chi1-3, have 1053 columns in 3 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dtyA/nostruct-align/1dtyA.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1d/1dtyA/info/1dtyA.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dtyA/info/1dtyA.stride-mixed.chi1-3, have 1482 columns in 4 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1aquA/nostruct-align/1aquA.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1a/1aquA/info/1aquA.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1a/1aquA/info/1aquA.stride-mixed.chi1-3, have 1763 columns in 5 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vcaA/nostruct-align/1vcaA.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1v/1vcaA/info/1vcaA.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vcaA/info/1vcaA.stride-mixed.chi1-3, have 1962 columns in 6 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bo9A/nostruct-align/1bo9A.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1b/1bo9A/info/1bo9A.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1b/1bo9A/info/1bo9A.stride-mixed.chi1-3, have 2035 columns in 7 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3h/3hhrB/nostruct-align/3hhrB.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/3h/3hhrB/info/3hhrB.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/3h/3hhrB/info/3hhrB.stride-mixed.chi1-3, have 2230 columns in 8 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jlnA/nostruct-align/1jlnA.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1j/1jlnA/info/1jlnA.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jlnA/info/1jlnA.stride-mixed.chi1-3, have 2527 columns in 9 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j9lA/nostruct-align/1j9lA.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1j/1j9lA/info/1j9lA.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j9lA/info/1j9lA.stride-mixed.chi1-3, have 2774 columns in 10 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1budA/nostruct-align/1budA.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1b/1budA/info/1budA.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1b/1budA/info/1budA.stride-mixed.chi1-3, have 2971 columns in 11 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/5l/5ldh/nostruct-align/5ldh.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/5l/5ldh/info/5ldh.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/5l/5ldh/info/5ldh.stride-mixed.chi1-3, have 3304 columns in 12 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/8o/8ohm/nostruct-align/8ohm.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/8o/8ohm/info/8ohm.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/8o/8ohm/info/8ohm.stride-mixed.chi1-3, have 3739 columns in 13 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eblA/nostruct-align/1eblA.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1e/1eblA/info/1eblA.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1e/1eblA/info/1eblA.stride-mixed.chi1-3, have 4056 columns in 14 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eblB/nostruct-align/1eblB.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1e/1eblB/info/1eblB.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1e/1eblB/info/1eblB.stride-mixed.chi1-3, have 4373 columns in 15 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gr2A/nostruct-align/1gr2A.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1g/1gr2A/info/1gr2A.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gr2A/info/1gr2A.stride-mixed.chi1-3, have 4623 columns in 16 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tdj/nostruct-align/1tdj.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1t/1tdj/info/1tdj.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tdj/info/1tdj.stride-mixed.chi1-3, have 5117 columns in 17 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ek4A/nostruct-align/1ek4A.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1e/1ek4A/info/1ek4A.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1e/1ek4A/info/1ek4A.stride-mixed.chi1-3, have 5523 columns in 18 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f48A/nostruct-align/1f48A.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1f/1f48A/info/1f48A.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f48A/info/1f48A.stride-mixed.chi1-3, have 6071 columns in 19 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1ndoA/nostruct-align/1ndoA.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1n/1ndoA/info/1ndoA.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1n/1ndoA/info/1ndoA.stride-mixed.chi1-3, have 6518 columns in 20 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1ndoB/nostruct-align/1ndoB.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1n/1ndoB/info/1ndoB.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1n/1ndoB/info/1ndoB.stride-mixed.chi1-3, have 6711 columns in 21 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1erd/nostruct-align/1erd.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1e/1erd/info/1erd.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1e/1erd/info/1erd.stride-mixed.chi1-3, have 6751 columns in 22 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1c14A/nostruct-align/1c14A.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1c/1c14A/info/1c14A.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1c/1c14A/info/1c14A.stride-mixed.chi1-3, have 7007 columns in 23 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vcbA/nostruct-align/1vcbA.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1v/1vcbA/info/1vcbA.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vcbA/info/1vcbA.stride-mixed.chi1-3, have 7105 columns in 24 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vcbB/nostruct-align/1vcbB.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1v/1vcbB/info/1vcbB.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vcbB/info/1vcbB.stride-mixed.chi1-3, have 7193 columns in 25 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vcbC/nostruct-align/1vcbC.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1v/1vcbC/info/1vcbC.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vcbC/info/1vcbC.stride-mixed.chi1-3, have 7335 columns in 26 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cjaA/nostruct-align/1cjaA.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1c/1cjaA/info/1cjaA.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cjaA/info/1cjaA.stride-mixed.chi1-3, have 7662 columns in 27 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1erp/nostruct-align/1erp.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1e/1erp/info/1erp.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1e/1erp/info/1erp.stride-mixed.chi1-3, have 7700 columns in 28 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bueA/nostruct-align/1bueA.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1b/1bueA/info/1bueA.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1b/1bueA/info/1bueA.stride-mixed.chi1-3, have 7965 columns in 29 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ebmA/nostruct-align/1ebmA.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1e/1ebmA/info/1ebmA.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1e/1ebmA/info/1ebmA.stride-mixed.chi1-3, have 8279 columns in 30 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a0aA/nostruct-align/1a0aA.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1a/1a0aA/info/1a0aA.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1a/1a0aA/info/1a0aA.stride-mixed.chi1-3, have 8342 columns in 31 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cqkA/nostruct-align/1cqkA.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1c/1cqkA/info/1cqkA.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cqkA/info/1cqkA.stride-mixed.chi1-3, have 8443 columns in 32 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1erv/nostruct-align/1erv.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1e/1erv/info/1erv.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1e/1erv/info/1erv.stride-mixed.chi1-3, have 8548 columns in 33 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1erw/nostruct-align/1erw.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1e/1erw/info/1erw.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1e/1erw/info/1erw.stride-mixed.chi1-3, have 8653 columns in 34 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3e/3egf/nostruct-align/3egf.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/3e/3egf/info/3egf.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/3e/3egf/info/3egf.stride-mixed.chi1-3, have 8706 columns in 35 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ery/nostruct-align/1ery.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1e/1ery/info/1ery.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1e/1ery/info/1ery.stride-mixed.chi1-3, have 8745 columns in 36 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hn9A/nostruct-align/1hn9A.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1h/1hn9A/info/1hn9A.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hn9A/info/1hn9A.stride-mixed.chi1-3, have 9062 columns in 37 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lldA/nostruct-align/1lldA.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1l/1lldA/info/1lldA.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lldA/info/1lldA.stride-mixed.chi1-3, have 9375 columns in 38 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eiwA/nostruct-align/1eiwA.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1e/1eiwA/info/1eiwA.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1e/1eiwA/info/1eiwA.stride-mixed.chi1-3, have 9486 columns in 39 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e6uA/nostruct-align/1e6uA.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1e/1e6uA/info/1e6uA.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e6uA/info/1e6uA.stride-mixed.chi1-3, have 9801 columns in 40 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1ten/nostruct-align/1ten.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1t/1ten/info/1ten.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1t/1ten/info/1ten.stride-mixed.chi1-3, have 9890 columns in 41 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kwhA/nostruct-align/1kwhA.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1k/1kwhA/info/1kwhA.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kwhA/info/1kwhA.stride-mixed.chi1-3, have 10382 columns in 42 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qgtA/nostruct-align/1qgtA.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1q/1qgtA/info/1qgtA.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qgtA/info/1qgtA.stride-mixed.chi1-3, have 10524 columns in 43 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1b3qA/nostruct-align/1b3qA.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1b/1b3qA/info/1b3qA.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1b/1b3qA/info/1b3qA.stride-mixed.chi1-3, have 10892 columns in 44 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1ter/nostruct-align/1ter.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1t/1ter/info/1ter.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1t/1ter/info/1ter.stride-mixed.chi1-3, have 10913 columns in 45 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1esc/nostruct-align/1esc.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1e/1esc/info/1esc.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1e/1esc/info/1esc.stride-mixed.chi1-3, have 11215 columns in 46 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1prxA/nostruct-align/1prxA.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1p/1prxA/info/1prxA.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1p/1prxA/info/1prxA.stride-mixed.chi1-3, have 11435 columns in 47 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1prxB/nostruct-align/1prxB.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1p/1prxB/info/1prxB.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1p/1prxB/info/1prxB.stride-mixed.chi1-3, have 11653 columns in 48 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2a/2ayh/nostruct-align/2ayh.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/2a/2ayh/info/2ayh.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/2a/2ayh/info/2ayh.stride-mixed.chi1-3, have 11867 columns in 49 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1esl/nostruct-align/1esl.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1e/1esl/info/1esl.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1e/1esl/info/1esl.stride-mixed.chi1-3, have 12024 columns in 50 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cjbA/nostruct-align/1cjbA.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1c/1cjbA/info/1cjbA.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cjbA/info/1cjbA.stride-mixed.chi1-3, have 12251 columns in 51 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1khvA/nostruct-align/1khvA.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1k/1khvA/info/1khvA.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1k/1khvA/info/1khvA.stride-mixed.chi1-3, have 12744 columns in 52 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eso/nostruct-align/1eso.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1e/1eso/info/1eso.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1e/1eso/info/1eso.stride-mixed.chi1-3, have 12898 columns in 53 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1ftpA/nostruct-align/1ftpA.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1f/1ftpA/info/1ftpA.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1f/1ftpA/info/1ftpA.stride-mixed.chi1-3, have 13031 columns in 54 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2a/2ahjA/nostruct-align/2ahjA.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/2a/2ahjA/info/2ahjA.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/2a/2ahjA/info/2ahjA.stride-mixed.chi1-3, have 13225 columns in 55 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2a/2ahjB/nostruct-align/2ahjB.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/2a/2ahjB/info/2ahjB.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/2a/2ahjB/info/2ahjB.stride-mixed.chi1-3, have 13436 columns in 56 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tfb/nostruct-align/1tfb.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1t/1tfb/info/1tfb.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tfb/info/1tfb.stride-mixed.chi1-3, have 13642 columns in 57 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2a/2ahjC/nostruct-align/2ahjC.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/2a/2ahjC/info/2ahjC.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/2a/2ahjC/info/2ahjC.stride-mixed.chi1-3, have 13837 columns in 58 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nscA/nostruct-align/1nscA.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1n/1nscA/info/1nscA.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nscA/info/1nscA.stride-mixed.chi1-3, have 14227 columns in 59 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ic6A/nostruct-align/1ic6A.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1i/1ic6A/info/1ic6A.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1i/1ic6A/info/1ic6A.stride-mixed.chi1-3, have 14506 columns in 60 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2b/2bdpA/nostruct-align/2bdpA.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/2b/2bdpA/info/2bdpA.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/2b/2bdpA/info/2bdpA.stride-mixed.chi1-3, have 15086 columns in 61 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tfe/nostruct-align/1tfe.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1t/1tfe/info/1tfe.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tfe/info/1tfe.stride-mixed.chi1-3, have 15228 columns in 62 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2p/2plc/nostruct-align/2plc.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/2p/2plc/info/2plc.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/2p/2plc/info/2plc.stride-mixed.chi1-3, have 15502 columns in 63 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tfg/nostruct-align/1tfg.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1t/1tfg/info/1tfg.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tfg/info/1tfg.stride-mixed.chi1-3, have 15614 columns in 64 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1do0A/nostruct-align/1do0A.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1d/1do0A/info/1do0A.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1d/1do0A/info/1do0A.stride-mixed.chi1-3, have 16020 columns in 65 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tfi/nostruct-align/1tfi.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1t/1tfi/info/1tfi.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tfi/info/1tfi.stride-mixed.chi1-3, have 16070 columns in 66 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ek6A/nostruct-align/1ek6A.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1e/1ek6A/info/1ek6A.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1e/1ek6A/info/1ek6A.stride-mixed.chi1-3, have 16416 columns in 67 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cxvA/nostruct-align/1cxvA.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1c/1cxvA/info/1cxvA.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cxvA/info/1cxvA.stride-mixed.chi1-3, have 16576 columns in 68 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cz4A/nostruct-align/1cz4A.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1c/1cz4A/info/1cz4A.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cz4A/info/1cz4A.stride-mixed.chi1-3, have 16761 columns in 69 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bftA/nostruct-align/1bftA.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1b/1bftA/info/1bftA.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1b/1bftA/info/1bftA.stride-mixed.chi1-3, have 16862 columns in 70 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1b3rA/nostruct-align/1b3rA.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1b/1b3rA/info/1b3rA.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1b/1b3rA/info/1b3rA.stride-mixed.chi1-3, have 17290 columns in 71 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qguA/nostruct-align/1qguA.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1q/1qguA/info/1qguA.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qguA/info/1qguA.stride-mixed.chi1-3, have 17768 columns in 72 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qguB/nostruct-align/1qguB.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1q/1qguB/info/1qguB.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qguB/info/1qguB.stride-mixed.chi1-3, have 18287 columns in 73 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1etc/nostruct-align/1etc.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1e/1etc/info/1etc.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1e/1etc/info/1etc.stride-mixed.chi1-3, have 18393 columns in 74 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tfr/nostruct-align/1tfr.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1t/1tfr/info/1tfr.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tfr/info/1tfr.stride-mixed.chi1-3, have 18676 columns in 75 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tfs/nostruct-align/1tfs.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1t/1tfs/info/1tfs.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tfs/info/1tfs.stride-mixed.chi1-3, have 18736 columns in 76 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2p/2plt/nostruct-align/2plt.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/2p/2plt/info/2plt.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/2p/2plt/info/2plt.stride-mixed.chi1-3, have 18834 columns in 77 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3p/3pghA/nostruct-align/3pghA.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/3p/3pghA/info/3pghA.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/3p/3pghA/info/3pghA.stride-mixed.chi1-3, have 19386 columns in 78 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cjcA/nostruct-align/1cjcA.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1c/1cjcA/info/1cjcA.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cjcA/info/1cjcA.stride-mixed.chi1-3, have 19841 columns in 79 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1ayaA/nostruct-align/1ayaA.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1a/1ayaA/info/1ayaA.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1a/1ayaA/info/1ayaA.stride-mixed.chi1-3, have 19942 columns in 80 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1exkA/nostruct-align/1exkA.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1e/1exkA/info/1exkA.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1e/1exkA/info/1exkA.stride-mixed.chi1-3, have 20021 columns in 81 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3m/3mddA/nostruct-align/3mddA.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/3m/3mddA/info/3mddA.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/3m/3mddA/info/3mddA.stride-mixed.chi1-3, have 20406 columns in 82 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/4p/4pah/nostruct-align/4pah.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/4p/4pah/info/4pah.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/4p/4pah/info/4pah.stride-mixed.chi1-3, have 20714 columns in 83 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d3gA/nostruct-align/1d3gA.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1d/1d3gA/info/1d3gA.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1d/1d3gA/info/1d3gA.stride-mixed.chi1-3, have 21074 columns in 84 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/6a/6acn/nostruct-align/6acn.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/6a/6acn/info/6acn.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/6a/6acn/info/6acn.stride-mixed.chi1-3, have 21828 columns in 85 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a0cA/nostruct-align/1a0cA.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1a/1a0cA/info/1a0cA.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1a/1a0cA/info/1a0cA.stride-mixed.chi1-3, have 22265 columns in 86 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1etu/nostruct-align/1etu.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1e/1etu/info/1etu.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1e/1etu/info/1etu.stride-mixed.chi1-3, have 22442 columns in 87 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cqmA/nostruct-align/1cqmA.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1c/1cqmA/info/1cqmA.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cqmA/info/1cqmA.stride-mixed.chi1-3, have 22540 columns in 88 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i05A/nostruct-align/1i05A.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1i/1i05A/info/1i05A.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i05A/info/1i05A.stride-mixed.chi1-3, have 22696 columns in 89 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gpwB/nostruct-align/1gpwB.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1g/1gpwB/info/1gpwB.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gpwB/info/1gpwB.stride-mixed.chi1-3, have 22896 columns in 90 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2c/2cb5A/nostruct-align/2cb5A.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/2c/2cb5A/info/2cb5A.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/2c/2cb5A/info/2cb5A.stride-mixed.chi1-3, have 23349 columns in 91 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eiyB/nostruct-align/1eiyB.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1e/1eiyB/info/1eiyB.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1e/1eiyB/info/1eiyB.stride-mixed.chi1-3, have 24134 columns in 92 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iibA/nostruct-align/1iibA.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1i/1iibA/info/1iibA.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1i/1iibA/info/1iibA.stride-mixed.chi1-3, have 24237 columns in 93 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e85A/nostruct-align/1e85A.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1e/1e85A/info/1e85A.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e85A/info/1e85A.stride-mixed.chi1-3, have 24362 columns in 94 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e6wA/nostruct-align/1e6wA.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1e/1e6wA/info/1e6wA.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e6wA/info/1e6wA.stride-mixed.chi1-3, have 24613 columns in 95 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cxwA/nostruct-align/1cxwA.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1c/1cxwA/info/1cxwA.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cxwA/info/1cxwA.stride-mixed.chi1-3, have 24673 columns in 96 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mhlA/nostruct-align/1mhlA.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1m/1mhlA/info/1mhlA.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mhlA/info/1mhlA.stride-mixed.chi1-3, have 24777 columns in 97 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qgvA/nostruct-align/1qgvA.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1q/1qgvA/info/1qgvA.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qgvA/info/1qgvA.stride-mixed.chi1-3, have 24907 columns in 98 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mhlC/nostruct-align/1mhlC.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1m/1mhlC/info/1mhlC.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mhlC/info/1mhlC.stride-mixed.chi1-3, have 25373 columns in 99 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cd9B/nostruct-align/1cd9B.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1c/1cd9B/info/1cd9B.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cd9B/info/1cd9B.stride-mixed.chi1-3, have 25579 columns in 100 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cd9C/nostruct-align/1cd9C.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1c/1cd9C/info/1cd9C.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cd9C/info/1cd9C.stride-mixed.chi1-3, have 25748 columns in 101 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kanA/nostruct-align/1kanA.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1k/1kanA/info/1kanA.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kanA/info/1kanA.stride-mixed.chi1-3, have 26001 columns in 102 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fmhA/nostruct-align/1fmhA.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1f/1fmhA/info/1fmhA.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fmhA/info/1fmhA.stride-mixed.chi1-3, have 26032 columns in 103 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fmhB/nostruct-align/1fmhB.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1f/1fmhB/info/1fmhB.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fmhB/info/1fmhB.stride-mixed.chi1-3, have 26063 columns in 104 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cjdA/nostruct-align/1cjdA.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1c/1cjdA/info/1cjdA.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cjdA/info/1cjdA.stride-mixed.chi1-3, have 26432 columns in 105 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1khxA/nostruct-align/1khxA.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1k/1khxA/info/1khxA.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1k/1khxA/info/1khxA.stride-mixed.chi1-3, have 26635 columns in 106 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3m/3mdeA/nostruct-align/3mdeA.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/3m/3mdeA/info/3mdeA.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/3m/3mdeA/info/3mdeA.stride-mixed.chi1-3, have 27020 columns in 107 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g3p/nostruct-align/1g3p.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1g/1g3p/info/1g3p.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1g/1g3p/info/1g3p.stride-mixed.chi1-3, have 27212 columns in 108 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1c17M/nostruct-align/1c17M.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1c/1c17M/info/1c17M.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1c/1c17M/info/1c17M.stride-mixed.chi1-3, have 27354 columns in 109 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hetA/nostruct-align/1hetA.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1h/1hetA/info/1hetA.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hetA/info/1hetA.stride-mixed.chi1-3, have 27728 columns in 110 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eur/nostruct-align/1eur.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1e/1eur/info/1eur.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1e/1eur/info/1eur.stride-mixed.chi1-3, have 28089 columns in 111 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d3hA/nostruct-align/1d3hA.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1d/1d3hA/info/1d3hA.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1d/1d3hA/info/1d3hA.stride-mixed.chi1-3, have 28453 columns in 112 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1ftrA/nostruct-align/1ftrA.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1f/1ftrA/info/1ftrA.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1f/1ftrA/info/1ftrA.stride-mixed.chi1-3, have 28749 columns in 113 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1buhB/nostruct-align/1buhB.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1b/1buhB/info/1buhB.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1b/1buhB/info/1buhB.stride-mixed.chi1-3, have 28819 columns in 114 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eut/nostruct-align/1eut.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1e/1eut/info/1eut.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1e/1eut/info/1eut.stride-mixed.chi1-3, have 29420 columns in 115 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pdgA/nostruct-align/1pdgA.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1p/1pdgA/info/1pdgA.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pdgA/info/1pdgA.stride-mixed.chi1-3, have 29507 columns in 116 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ebpA/nostruct-align/1ebpA.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1e/1ebpA/info/1ebpA.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1e/1ebpA/info/1ebpA.stride-mixed.chi1-3, have 29718 columns in 117 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nseA/nostruct-align/1nseA.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1n/1nseA/info/1nseA.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nseA/info/1nseA.stride-mixed.chi1-3, have 30134 columns in 118 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iazA/nostruct-align/1iazA.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1i/1iazA/info/1iazA.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1i/1iazA/info/1iazA.stride-mixed.chi1-3, have 30309 columns in 119 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1euu/nostruct-align/1euu.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1e/1euu/info/1euu.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1e/1euu/info/1euu.stride-mixed.chi1-3, have 30910 columns in 120 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pdgC/nostruct-align/1pdgC.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights
# Reading desired output from /projects/compbio/experiments/models.97/pdb/1p/1pdgC/info/1pdgC.stride-mixed.chi1-3
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pdgC/info/1pdgC.stride-mixed.chi1-3, have 30996 columns in 121 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2p/2pna/nostruct-align/2pna.t2k-thin90.a2m.gz
# requested less than 0 bits saved, using initial weights