make TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 dirs make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev' mkdir logs mkdir: cannot create directory `logs': File exists make[1]: [dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[1]: [dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[1]: [dirs] Error 1 (ignored) mkdir networks mkdir: cannot create directory `networks': File exists make[1]: [dirs] Error 1 (ignored) /projects/compbio/experiments/models.97/scripts/serial-make -makefile /projects/compbio/experiments/protein-predict/predict-2nd/testing/Make.para -nouse_subdir -modelsdir /projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev -targets 'TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs' < ../training-data/fullset.nets # Wed Dec 22 18:22:25 2010 # net001: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net001' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net001' # Wed Dec 22 18:22:25 2010 # net002: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net002' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net002' # Wed Dec 22 18:22:25 2010 # net003: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net003' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net003' # Wed Dec 22 18:22:25 2010 # net004: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net004' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net004' # Wed Dec 22 18:22:25 2010 # net005: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net005' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net005' # Wed Dec 22 18:22:25 2010 # net006: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net006' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net006' # Wed Dec 22 18:22:25 2010 # net007: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net007' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net007' # Wed Dec 22 18:22:26 2010 # net008: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net008' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net008' # Wed Dec 22 18:22:26 2010 # net009: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net009' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net009' # Wed Dec 22 18:22:26 2010 # net010: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net010' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net010' # Wed Dec 22 18:22:26 2010 # net011: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net011' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net011' # Wed Dec 22 18:22:26 2010 # net012: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net012' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net012' # Wed Dec 22 18:22:26 2010 # net013: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net013' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net013' # Wed Dec 22 18:22:26 2010 # net014: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net014' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net014' # Wed Dec 22 18:22:26 2010 # net015: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net015' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net015' # Wed Dec 22 18:22:26 2010 # net016: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net016' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net016' # Wed Dec 22 18:22:26 2010 # net017: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net017' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net017' # Wed Dec 22 18:22:26 2010 # net018: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net018' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net018' # Wed Dec 22 18:22:27 2010 # net019: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net019' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net019' # Wed Dec 22 18:22:27 2010 # net020: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net020' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net020' # Wed Dec 22 18:22:27 2010 # net021: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net021' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net021' # Wed Dec 22 18:22:27 2010 # net022: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net022' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net022' # Wed Dec 22 18:22:27 2010 # net023: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net023' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net023' # Wed Dec 22 18:22:27 2010 # net024: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net024' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net024' # Wed Dec 22 18:22:27 2010 # net025: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net025' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net025' # Wed Dec 22 18:22:27 2010 # net026: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net026' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net026' # Wed Dec 22 18:22:27 2010 # net027: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net027' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net027' # Wed Dec 22 18:22:27 2010 # net028: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net028' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net028' # Wed Dec 22 18:22:28 2010 # net029: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net029' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net029' # Wed Dec 22 18:22:28 2010 # net030: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net030' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net030' # Wed Dec 22 18:22:28 2010 # net031: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net031' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net031' # Wed Dec 22 18:22:28 2010 # net032: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net032' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net032' # Wed Dec 22 18:22:28 2010 # net033: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net033' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net033' # Wed Dec 22 18:22:28 2010 # net034: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net034' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net034' # Wed Dec 22 18:22:28 2010 # net035: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net035' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net035' # Wed Dec 22 18:22:28 2010 # net036: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net036' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net036' # Wed Dec 22 18:22:28 2010 # net037: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net037' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net037' # Wed Dec 22 18:22:28 2010 # net038: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net038' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net038' # Wed Dec 22 18:22:28 2010 # net039: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net039' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net039' # Wed Dec 22 18:22:29 2010 # net040: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net040' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net040' # Wed Dec 22 18:22:29 2010 # net041: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net041' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net041' # Wed Dec 22 18:22:29 2010 # net042: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net042' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net042' # Wed Dec 22 18:22:29 2010 # net043: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net043' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net043' # Wed Dec 22 18:22:29 2010 # net044: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net044' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net044' # Wed Dec 22 18:22:29 2010 # net045: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net045' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net045' # Wed Dec 22 18:22:29 2010 # net046: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net046' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net046' # Wed Dec 22 18:22:29 2010 # net047: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net047' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net047' # Wed Dec 22 18:22:29 2010 # net048: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net048' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net048' # Wed Dec 22 18:22:29 2010 # net049: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net049' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net049' # Wed Dec 22 18:22:30 2010 # net050: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net050' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net050' # Wed Dec 22 18:22:30 2010 # net051: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net051' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net051' # Wed Dec 22 18:22:30 2010 # net052: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net052' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net052' # Wed Dec 22 18:22:30 2010 # net053: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net053' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net053' # Wed Dec 22 18:22:30 2010 # net054: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net054' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net054' # Wed Dec 22 18:22:30 2010 # net055: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net055' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net055' # Wed Dec 22 18:22:30 2010 # net056: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net056' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net056' # Wed Dec 22 18:22:30 2010 # net057: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net057' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net057' # Wed Dec 22 18:22:30 2010 # net058: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net058' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net058' # Wed Dec 22 18:22:30 2010 # net059: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net059' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net059' # Wed Dec 22 18:22:30 2010 # net060: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net060' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net060' # Wed Dec 22 18:22:31 2010 # net061: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net061' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net061' # Wed Dec 22 18:22:31 2010 # net062: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net062' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net062' # Wed Dec 22 18:22:31 2010 # net063: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net063' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net063' # Wed Dec 22 18:22:31 2010 # net064: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net064' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net064' # Wed Dec 22 18:22:31 2010 # net065: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net065' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net065' # Wed Dec 22 18:22:31 2010 # net066: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net066' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net066' # Wed Dec 22 18:22:31 2010 # net067: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net067' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net067' # Wed Dec 22 18:22:31 2010 # net068: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net068' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net068' # Wed Dec 22 18:22:31 2010 # net069: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net069' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net069' # Wed Dec 22 18:22:31 2010 # net070: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net070' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net070' # Wed Dec 22 18:22:32 2010 # net071: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net071' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net071' # Wed Dec 22 18:22:32 2010 # net072: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net072' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net072' # Wed Dec 22 18:22:32 2010 # net073: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net073' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net073' # Wed Dec 22 18:22:32 2010 # net074: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net074' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net074' # Wed Dec 22 18:22:32 2010 # net075: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net075' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net075' # Wed Dec 22 18:22:32 2010 # net076: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net076' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net076' # Wed Dec 22 18:22:32 2010 # net077: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net077' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net077' # Wed Dec 22 18:22:32 2010 # net078: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net078' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net078' # Wed Dec 22 18:22:32 2010 # net079: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net079' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net079' # Wed Dec 22 18:22:32 2010 # net080: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net080' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net080' # Wed Dec 22 18:22:32 2010 # net081: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net081' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net081' # Wed Dec 22 18:22:33 2010 # net082: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net082' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net082' # Wed Dec 22 18:22:33 2010 # net083: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net083' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net083' # Wed Dec 22 18:22:33 2010 # net084: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net084' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net084' # Wed Dec 22 18:22:33 2010 # net085: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net085' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net085' # Wed Dec 22 18:22:33 2010 # net086: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net086' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net086' # Wed Dec 22 18:22:33 2010 # net087: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net087' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net087' # Wed Dec 22 18:22:33 2010 # net088: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net088' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net088' # Wed Dec 22 18:22:33 2010 # net089: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net089' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net089' # Wed Dec 22 18:22:33 2010 # net090: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net090' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net090' # Wed Dec 22 18:22:33 2010 # net091: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net091' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net091' # Wed Dec 22 18:22:34 2010 # net092: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net092' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net092' # Wed Dec 22 18:22:34 2010 # net093: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net093' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net093' # Wed Dec 22 18:22:34 2010 # net094: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net094' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net094' # Wed Dec 22 18:22:34 2010 # net095: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net095' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net095' # Wed Dec 22 18:22:34 2010 # net096: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net096' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net096' # Wed Dec 22 18:22:34 2010 # net097: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net097' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net097' # Wed Dec 22 18:22:34 2010 # net098: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net098' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net098' # Wed Dec 22 18:22:34 2010 # net099: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net099' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net099' # Wed Dec 22 18:22:34 2010 # net100: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net100' mkdir -p networks mkdir -p run-scripts mkdir -p logs mkdir -p quality-reports make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net100' make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev' make TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 trAB-mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev' /projects/compbio/experiments/models.97/scripts/serial-make -makefile /projects/compbio/experiments/protein-predict/predict-2nd/testing/Make.para -nouse_subdir -modelsdir /projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev -targets 'TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts' < ../training-data/fullset.nets # Wed Dec 22 18:22:34 2010 # net001: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net001' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net001/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net001' # Wed Dec 22 18:22:35 2010 # net002: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net002' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net002/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net002' # Wed Dec 22 18:22:35 2010 # net003: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net003' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net003/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net003' # Wed Dec 22 18:22:35 2010 # net004: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net004' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net004/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net004' # Wed Dec 22 18:22:35 2010 # net005: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net005' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net005/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net005' # Wed Dec 22 18:22:35 2010 # net006: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net006' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net006/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net006' # Wed Dec 22 18:22:35 2010 # net007: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net007' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net007/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net007' # Wed Dec 22 18:22:35 2010 # net008: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net008' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net008/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net008' # Wed Dec 22 18:22:35 2010 # net009: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net009' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net009/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net009' # Wed Dec 22 18:22:35 2010 # net010: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net010' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net010/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net010' # Wed Dec 22 18:22:36 2010 # net011: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net011' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net011/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net011' # Wed Dec 22 18:22:36 2010 # net012: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net012' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net012/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net012' # Wed Dec 22 18:22:36 2010 # net013: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net013' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net013/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net013' # Wed Dec 22 18:22:36 2010 # net014: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net014' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net014/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net014' # Wed Dec 22 18:22:36 2010 # net015: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net015' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net015/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net015' # Wed Dec 22 18:22:36 2010 # net016: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net016' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net016/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net016' # Wed Dec 22 18:22:36 2010 # net017: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net017' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net017/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net017' # Wed Dec 22 18:22:36 2010 # net018: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net018' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net018/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net018' # Wed Dec 22 18:22:36 2010 # net019: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net019' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net019/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net019' # Wed Dec 22 18:22:37 2010 # net020: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net020' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net020/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net020' # Wed Dec 22 18:22:37 2010 # net021: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net021' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net021/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net021' # Wed Dec 22 18:22:37 2010 # net022: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net022' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net022/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net022' # Wed Dec 22 18:22:37 2010 # net023: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net023' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net023/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net023' # Wed Dec 22 18:22:37 2010 # net024: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net024' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net024/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net024' # Wed Dec 22 18:22:37 2010 # net025: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net025' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net025/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net025' # Wed Dec 22 18:22:37 2010 # net026: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net026' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net026/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net026' # Wed Dec 22 18:22:37 2010 # net027: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net027' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net027/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net027' # Wed Dec 22 18:22:37 2010 # net028: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net028' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net028/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net028' # Wed Dec 22 18:22:38 2010 # net029: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net029' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net029/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net029' # Wed Dec 22 18:22:38 2010 # net030: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net030' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net030/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net030' # Wed Dec 22 18:22:38 2010 # net031: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net031' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net031/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net031' # Wed Dec 22 18:22:38 2010 # net032: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net032' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net032/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net032' # Wed Dec 22 18:22:38 2010 # net033: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net033' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net033/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net033' # Wed Dec 22 18:22:38 2010 # net034: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net034' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net034/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net034' # Wed Dec 22 18:22:38 2010 # net035: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net035' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net035/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net035' # Wed Dec 22 18:22:38 2010 # net036: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net036' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net036/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net036' # Wed Dec 22 18:22:38 2010 # net037: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net037' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net037/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net037' # Wed Dec 22 18:22:39 2010 # net038: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net038' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net038/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net038' # Wed Dec 22 18:22:39 2010 # net039: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net039' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net039/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net039' # Wed Dec 22 18:22:39 2010 # net040: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net040' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net040/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net040' # Wed Dec 22 18:22:39 2010 # net041: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net041' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net041/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net041' # Wed Dec 22 18:22:39 2010 # net042: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net042' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net042/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net042' # Wed Dec 22 18:22:39 2010 # net043: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net043' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net043/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net043' # Wed Dec 22 18:22:39 2010 # net044: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net044' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net044/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net044' # Wed Dec 22 18:22:39 2010 # net045: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net045' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net045/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net045' # Wed Dec 22 18:22:39 2010 # net046: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net046' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net046/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net046' # Wed Dec 22 18:22:40 2010 # net047: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net047' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net047/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net047' # Wed Dec 22 18:22:40 2010 # net048: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net048' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net048/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net048' # Wed Dec 22 18:22:40 2010 # net049: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net049' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net049/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net049' # Wed Dec 22 18:22:40 2010 # net050: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net050' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net050/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net050' # Wed Dec 22 18:22:40 2010 # net051: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net051' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net051/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net051' # Wed Dec 22 18:22:40 2010 # net052: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net052' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net052/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net052' # Wed Dec 22 18:22:40 2010 # net053: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net053' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net053/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net053' # Wed Dec 22 18:22:40 2010 # net054: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net054' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net054/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net054' # Wed Dec 22 18:22:40 2010 # net055: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net055' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net055/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net055' # Wed Dec 22 18:22:41 2010 # net056: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net056' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net056/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net056' # Wed Dec 22 18:22:41 2010 # net057: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net057' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net057/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net057' # Wed Dec 22 18:22:41 2010 # net058: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net058' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net058/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net058' # Wed Dec 22 18:22:41 2010 # net059: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net059' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net059/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net059' # Wed Dec 22 18:22:41 2010 # net060: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net060' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net060/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net060' # Wed Dec 22 18:22:41 2010 # net061: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net061' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net061/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net061' # Wed Dec 22 18:22:41 2010 # net062: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net062' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net062/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net062' # Wed Dec 22 18:22:41 2010 # net063: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net063' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net063/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net063' # Wed Dec 22 18:22:41 2010 # net064: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net064' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net064/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net064' # Wed Dec 22 18:22:42 2010 # net065: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net065' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net065/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net065' # Wed Dec 22 18:22:42 2010 # net066: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net066' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net066/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net066' # Wed Dec 22 18:22:42 2010 # net067: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net067' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net067/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net067' # Wed Dec 22 18:22:42 2010 # net068: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net068' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net068/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net068' # Wed Dec 22 18:22:42 2010 # net069: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net069' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net069/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net069' # Wed Dec 22 18:22:42 2010 # net070: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net070' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net070/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net070' # Wed Dec 22 18:22:42 2010 # net071: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net071' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net071/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net071' # Wed Dec 22 18:22:42 2010 # net072: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net072' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net072/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net072' # Wed Dec 22 18:22:42 2010 # net073: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net073' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net073/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net073' # Wed Dec 22 18:22:43 2010 # net074: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net074' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net074/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net074' # Wed Dec 22 18:22:43 2010 # net075: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net075' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net075/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net075' # Wed Dec 22 18:22:43 2010 # net076: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net076' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net076/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net076' # Wed Dec 22 18:22:43 2010 # net077: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net077' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net077/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net077' # Wed Dec 22 18:22:43 2010 # net078: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net078' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net078/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net078' # Wed Dec 22 18:22:43 2010 # net079: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net079' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net079/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net079' # Wed Dec 22 18:22:43 2010 # net080: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net080' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net080/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net080' # Wed Dec 22 18:22:43 2010 # net081: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net081' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net081/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net081' # Wed Dec 22 18:22:43 2010 # net082: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net082' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net082/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net082' # Wed Dec 22 18:22:44 2010 # net083: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net083' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net083/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net083' # Wed Dec 22 18:22:44 2010 # net084: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net084' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net084/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net084' # Wed Dec 22 18:22:44 2010 # net085: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net085' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net085/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net085' # Wed Dec 22 18:22:44 2010 # net086: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net086' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net086/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net086' # Wed Dec 22 18:22:44 2010 # net087: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net087' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net087/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net087' # Wed Dec 22 18:22:44 2010 # net088: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net088' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net088/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net088' # Wed Dec 22 18:22:44 2010 # net089: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net089' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net089/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net089' # Wed Dec 22 18:22:44 2010 # net090: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net090' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net090/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net090' # Wed Dec 22 18:22:44 2010 # net091: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net091' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net091/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net091' # Wed Dec 22 18:22:45 2010 # net092: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net092' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net092/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net092' # Wed Dec 22 18:22:45 2010 # net093: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net093' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net093/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net093' # Wed Dec 22 18:22:45 2010 # net094: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net094' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net094/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net094' # Wed Dec 22 18:22:45 2010 # net095: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net095' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net095/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net095' # Wed Dec 22 18:22:45 2010 # net096: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net096' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net096/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net096' # Wed Dec 22 18:22:45 2010 # net097: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net097' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net097/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net097' # Wed Dec 22 18:22:45 2010 # net098: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net098' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net098/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net098' # Wed Dec 22 18:22:45 2010 # net099: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net099' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net099/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net099' # Wed Dec 22 18:22:45 2010 # net100: TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net100' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/bystroff.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/bys/" \ | sed -e "s/ARCHITECTURE/Gbys-5-20-5-20-5/" \ | sed -e "s/NETNUM/net100/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-bys-Gbys-5-20-5-20-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev/net100' make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev' make TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 trAB-mult50.run make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev' /projects/compbio/experiments/models.97/scripts/para-trickle-make -se2log -cluster bmecluster -manyids -max_jobs 10 -rmvdir -makefile /projects/compbio/experiments/protein-predict/predict-2nd/testing/Make.para -nouse_subdir -modelsdir /projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev -targets 'TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50-tr12.run' < ../training-data/fullset.nets para-trickle-make: -terse option suppresses most messages. para-trickle-make: -verbose option generates more messages. para-trickle-make: -help option gives the full usage menu. para-trickle-make: Created joblist. See /projects/compbio/tmp/para-trickle-make-bmecluster-karplus-21514-37754790/README for more info. /projects/compbio/experiments/models.97/scripts/para-trickle-make -se2log -cluster bmecluster -manyids -max_jobs 10 -rmvdir -makefile /projects/compbio/experiments/protein-predict/predict-2nd/testing/Make.para -nouse_subdir -modelsdir /projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev -targets 'TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50-tr23.run' < ../training-data/fullset.nets para-trickle-make: -terse option suppresses most messages. para-trickle-make: -verbose option generates more messages. para-trickle-make: -help option gives the full usage menu. para-trickle-make: Created joblist. See /projects/compbio/tmp/para-trickle-make-bmecluster-karplus-21531-30205496/README for more info. /projects/compbio/experiments/models.97/scripts/para-trickle-make -se2log -cluster bmecluster -manyids -max_jobs 10 -rmvdir -makefile /projects/compbio/experiments/protein-predict/predict-2nd/testing/Make.para -nouse_subdir -modelsdir /projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev -targets 'TXXALIGN=bys ALPHANAME=aa ALPHALIBFILE=bystroff.alphabet ALPHADIR=bys_rev ARCHITECTURE=Gbys-5-20-5-20-5 DATASET=dunbrack-30pc-1763 mult50-tr31.run' < ../training-data/fullset.nets para-trickle-make: -terse option suppresses most messages. para-trickle-make: -verbose option generates more messages. para-trickle-make: -help option gives the full usage menu. para-trickle-make: Created joblist. See /projects/compbio/tmp/para-trickle-make-bmecluster-karplus-21547-60647263/README for more info. make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/bys_rev'