# command:# Prefix for input files set to 
# command:# Prefix for output files set to 
# command:# Seed set to 1141454699
# command:# Read 28 alphabets and 0 BackgroundProbs from /projects/compbio/lib/alphabet/burial.alphabet
# command:Unrecognized 1th alphabet way-back-11 for BackgroundProbs  that has no name
Unrecognized 1th alphabet near-backbone-11 for BackgroundProbs  that has no name
Unrecognized 1th alphabet rel_sa10 for BackgroundProbs  that has no name
Unrecognized 1th alphabet abs_sa7 for BackgroundProbs  that has no name
Unrecognized 1th alphabet alpha11 for BackgroundProbs  that has no name
Unrecognized 1th alphabet Bystroff for BackgroundProbs  that has no name
Unrecognized 1th alphabet chi1_3 for BackgroundProbs  that has no name
Unrecognized 1th alphabet DSSP for BackgroundProbs  that has no name
Unrecognized 1th alphabet EBGHSTL for BackgroundProbs  that has no name
Unrecognized 1th alphabet str for BackgroundProbs  that has no name
Unrecognized 1th alphabet str2 for BackgroundProbs  that has no name
Unrecognized 1th alphabet dssp_ehl2 for BackgroundProbs  that has no name
Unrecognized 1th alphabet STRIDE for BackgroundProbs  that has no name
Unrecognized 1th alphabet EBGHTL for BackgroundProbs  that has no name
Unrecognized 1th alphabet stride_ehl2 for BackgroundProbs  that has no name
Unrecognized 1th alphabet tco for BackgroundProbs  that has no name
Unrecognized 1th alphabet pb for BackgroundProbs  that has no name
Unrecognized 1th alphabet gamma_2 for BackgroundProbs  that has no name
Unrecognized 1th alphabet n_sep for BackgroundProbs  that has no name
Unrecognized 1th alphabet o_sep for BackgroundProbs  that has no name
Unrecognized 1th alphabet n_notor for BackgroundProbs  that has no name
Unrecognized 1th alphabet o_notor for BackgroundProbs  that has no name
# Read 0 alphabets and 7 BackgroundProbs from /projects/compbio/lib/alphabet/dunbrack-in-scop.backgrounds
# command:# Neural network set to IDGaaH13-3-13-5-13-7-13-9-n_sep-empty.net
# command:# Neural network set to dunbrack-30pc-1763-t2k-thin90-IDGaaH13-3-13-7-13-9-13-11-t2c3-CB_burial_12_7-from-empty.net
# command:# Learning params read from /cse/faculty/karplus/dna/predict-2nd/testing/params/7-jul-05.params
# command:# Initializing Weights for CB_burial_12_7
# Initializing Bias for CB_burial_12_7
# Initializing Gain for CB_burial_12_7
# Initializing Weights for third_layer
# Initializing Bias for third_layer
# Initializing Gain for third_layer
# Initializing Weights for second_layer
# Initializing Bias for second_layer
# Initializing Gain for second_layer
# Initializing Weights for FirstLayer
# Initializing Bias for FirstLayer
# Initializing Gain for FirstLayer
# Network initialization done
# command:CPU_time= 0.019997 sec, elapsed time= 0.052436 sec)
# command:# command:# Prefix for input files set to /cse/faculty/karplus/dna/predict-2nd/testing/training-data/
# command:# reading script from file dunbrack-30pc-1763-2.t2k-thin90-CB_burial_12_7
# Prefix for input files set to 
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1umkA/nostruct-align/1umkA.t2k-thin90.a2m.gz
# 1umkA.t2k-thin90.a2m with 633 sequences, total weight= 633 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17855 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1umkA/info/1umkA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1umkA/nostruct-align/1umkA.t2k-thin90.a2m.gz, have 271 columns in 1 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gmuA/nostruct-align/1gmuA.t2k-thin90.a2m.gz
# 1gmuA.t2k-thin90.a2m with 57 sequences, total weight= 32.238 avg weight= 0.565579 44 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gmuA/info/1gmuA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gmuA/nostruct-align/1gmuA.t2k-thin90.a2m.gz, have 409 columns in 2 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1aohA/nostruct-align/1aohA.t2k-thin90.a2m.gz
# 1aohA.t2k-thin90.a2m with 29 sequences, total weight= 18.7337 avg weight= 0.64599 29 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1aohA/info/1aohA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1a/1aohA/nostruct-align/1aohA.t2k-thin90.a2m.gz, have 552 columns in 3 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s0aA/nostruct-align/1s0aA.t2k-thin90.a2m.gz
# 1s0aA.t2k-thin90.a2m with 1990 sequences, total weight= 614.273 avg weight= 0.30868 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.32076 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s0aA/info/1s0aA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1s/1s0aA/nostruct-align/1s0aA.t2k-thin90.a2m.gz, have 980 columns in 4 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g6gA/nostruct-align/1g6gA.t2k-thin90.a2m.gz
# 1g6gA.t2k-thin90.a2m with 201 sequences, total weight= 201 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24369 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g6gA/info/1g6gA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1g6gA/nostruct-align/1g6gA.t2k-thin90.a2m.gz, have 1107 columns in 5 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1din/nostruct-align/1din.t2k-thin90.a2m.gz
# 1din.t2k-thin90.a2m with 241 sequences, total weight= 241 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.979966 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1din/info/1din.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1d/1din/nostruct-align/1din.t2k-thin90.a2m.gz, have 1340 columns in 6 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jkeA/nostruct-align/1jkeA.t2k-thin90.a2m.gz
# 1jkeA.t2k-thin90.a2m with 89 sequences, total weight= 8.17766 avg weight= 0.0918838 29 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jkeA/info/1jkeA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jkeA/nostruct-align/1jkeA.t2k-thin90.a2m.gz, have 1485 columns in 7 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tuvA/nostruct-align/1tuvA.t2k-thin90.a2m.gz
# 1tuvA.t2k-thin90.a2m with 103 sequences, total weight= 57.6902 avg weight= 0.560099 41 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tuvA/info/1tuvA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tuvA/nostruct-align/1tuvA.t2k-thin90.a2m.gz, have 1588 columns in 8 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1ls9A/nostruct-align/1ls9A.t2k-thin90.a2m.gz
# 1ls9A.t2k-thin90.a2m with 361 sequences, total weight= 361 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1997 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1ls9A/info/1ls9A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1l/1ls9A/nostruct-align/1ls9A.t2k-thin90.a2m.gz, have 1679 columns in 9 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gyvA/nostruct-align/1gyvA.t2k-thin90.a2m.gz
# 1gyvA.t2k-thin90.a2m with 29 sequences, total weight= 18.4184 avg weight= 0.635118 29 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gyvA/info/1gyvA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gyvA/nostruct-align/1gyvA.t2k-thin90.a2m.gz, have 1799 columns in 10 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1ccwA/nostruct-align/1ccwA.t2k-thin90.a2m.gz
# 1ccwA.t2k-thin90.a2m with 189 sequences, total weight= 62.8717 avg weight= 0.332654 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1ccwA/info/1ccwA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1c/1ccwA/nostruct-align/1ccwA.t2k-thin90.a2m.gz, have 1936 columns in 11 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iujA/nostruct-align/1iujA.t2k-thin90.a2m.gz
# 1iujA.t2k-thin90.a2m with 113 sequences, total weight= 113 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13203 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iujA/info/1iujA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1iujA/nostruct-align/1iujA.t2k-thin90.a2m.gz, have 2038 columns in 12 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1y8aA/nostruct-align/1y8aA.t2k-thin90.a2m.gz
# 1y8aA.t2k-thin90.a2m with 113 sequences, total weight= 113 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26947 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1y8aA/info/1y8aA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1y/1y8aA/nostruct-align/1y8aA.t2k-thin90.a2m.gz, have 2351 columns in 13 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1ako/nostruct-align/1ako.t2k-thin90.a2m.gz
# 1ako.t2k-thin90.a2m with 227 sequences, total weight= 227 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25401 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1ako/info/1ako.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1a/1ako/nostruct-align/1ako.t2k-thin90.a2m.gz, have 2619 columns in 14 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nh0A/nostruct-align/1nh0A.t2k-thin90.a2m.gz
# 1nh0A.t2k-thin90.a2m with 966 sequences, total weight= 2.82694 avg weight= 0.00292644 21 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nh0A/info/1nh0A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nh0A/nostruct-align/1nh0A.t2k-thin90.a2m.gz, have 2718 columns in 15 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dlwA/nostruct-align/1dlwA.t2k-thin90.a2m.gz
# 1dlwA.t2k-thin90.a2m with 46 sequences, total weight= 22.0109 avg weight= 0.478498 39 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dlwA/info/1dlwA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dlwA/nostruct-align/1dlwA.t2k-thin90.a2m.gz, have 2834 columns in 16 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o7sA/nostruct-align/1o7sA.t2k-thin90.a2m.gz
# 1o7sA.t2k-thin90.a2m with 1187 sequences, total weight= 162.524 avg weight= 0.13692 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31368 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o7sA/info/1o7sA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o7sA/nostruct-align/1o7sA.t2k-thin90.a2m.gz, have 2946 columns in 17 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ixh/nostruct-align/1ixh.t2k-thin90.a2m.gz
# 1ixh.t2k-thin90.a2m with 177 sequences, total weight= 80.5958 avg weight= 0.455343 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ixh/info/1ixh.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1ixh/nostruct-align/1ixh.t2k-thin90.a2m.gz, have 3267 columns in 18 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uuzA/nostruct-align/1uuzA.t2k-thin90.a2m.gz
# 1uuzA.t2k-thin90.a2m with 8 sequences, total weight= 5.42594 avg weight= 0.678242 16 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uuzA/info/1uuzA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uuzA/nostruct-align/1uuzA.t2k-thin90.a2m.gz, have 3396 columns in 19 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kwfA/nostruct-align/1kwfA.t2k-thin90.a2m.gz
# 1kwfA.t2k-thin90.a2m with 45 sequences, total weight= 45 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kwfA/info/1kwfA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kwfA/nostruct-align/1kwfA.t2k-thin90.a2m.gz, have 3759 columns in 20 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pdo/nostruct-align/1pdo.t2k-thin90.a2m.gz
# 1pdo.t2k-thin90.a2m with 113 sequences, total weight= 62.9723 avg weight= 0.557277 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30063 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pdo/info/1pdo.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pdo/nostruct-align/1pdo.t2k-thin90.a2m.gz, have 3888 columns in 21 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j98A/nostruct-align/1j98A.t2k-thin90.a2m.gz
# 1j98A.t2k-thin90.a2m with 41 sequences, total weight= 6.69842 avg weight= 0.163376 27 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j98A/info/1j98A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j98A/nostruct-align/1j98A.t2k-thin90.a2m.gz, have 4042 columns in 22 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jidA/nostruct-align/1jidA.t2k-thin90.a2m.gz
# 1jidA.t2k-thin90.a2m with 33 sequences, total weight= 19.059 avg weight= 0.577546 33 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jidA/info/1jidA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jidA/nostruct-align/1jidA.t2k-thin90.a2m.gz, have 4156 columns in 23 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l2hA/nostruct-align/1l2hA.t2k-thin90.a2m.gz
# 1l2hA.t2k-thin90.a2m with 53 sequences, total weight= 23.9166 avg weight= 0.451257 36 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l2hA/info/1l2hA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1l/1l2hA/nostruct-align/1l2hA.t2k-thin90.a2m.gz, have 4300 columns in 24 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kv7A/nostruct-align/1kv7A.t2k-thin90.a2m.gz
# 1kv7A.t2k-thin90.a2m with 228 sequences, total weight= 228 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17978 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kv7A/info/1kv7A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kv7A/nostruct-align/1kv7A.t2k-thin90.a2m.gz, have 4763 columns in 25 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1ft5A/nostruct-align/1ft5A.t2k-thin90.a2m.gz
# 1ft5A.t2k-thin90.a2m with 57 sequences, total weight= 57 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.868444 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1ft5A/info/1ft5A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1f/1ft5A/nostruct-align/1ft5A.t2k-thin90.a2m.gz, have 4974 columns in 26 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1ytlA/nostruct-align/1ytlA.t2k-thin90.a2m.gz
# 1ytlA.t2k-thin90.a2m with 16 sequences, total weight= 9.39082 avg weight= 0.586926 22 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1ytlA/info/1ytlA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1y/1ytlA/nostruct-align/1ytlA.t2k-thin90.a2m.gz, have 5132 columns in 27 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1ro7A/nostruct-align/1ro7A.t2k-thin90.a2m.gz
# 1ro7A.t2k-thin90.a2m with 6 sequences, total weight= 3.52255 avg weight= 0.587091 12 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1ro7A/info/1ro7A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1ro7A/nostruct-align/1ro7A.t2k-thin90.a2m.gz, have 5390 columns in 28 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/4f/4fiv/nostruct-align/4fiv.t2k-thin90.a2m.gz
# 4fiv.t2k-thin90.a2m with 338 sequences, total weight= 29.1248 avg weight= 0.0861681 45 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/4f/4fiv/info/4fiv.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/4f/4fiv/nostruct-align/4fiv.t2k-thin90.a2m.gz, have 5503 columns in 29 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lj8A/nostruct-align/1lj8A.t2k-thin90.a2m.gz
# 1lj8A.t2k-thin90.a2m with 89 sequences, total weight= 40.8981 avg weight= 0.45953 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lj8A/info/1lj8A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lj8A/nostruct-align/1lj8A.t2k-thin90.a2m.gz, have 5995 columns in 30 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1z/1z2nX/nostruct-align/1z2nX.t2k-thin90.a2m.gz
# 1z2nX.t2k-thin90.a2m with 101 sequences, total weight= 101 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13183 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1z/1z2nX/info/1z2nX.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1z/1z2nX/nostruct-align/1z2nX.t2k-thin90.a2m.gz, have 6306 columns in 31 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qgvA/nostruct-align/1qgvA.t2k-thin90.a2m.gz
# 1qgvA.t2k-thin90.a2m with 218 sequences, total weight= 103.319 avg weight= 0.473942 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qgvA/info/1qgvA.stride-mixed.CB-burial-12-7
WARNING: skipping a, since it is lower case.
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qgvA/nostruct-align/1qgvA.t2k-thin90.a2m.gz, have 6436 columns in 32 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o6vA/nostruct-align/1o6vA.t2k-thin90.a2m.gz
# 1o6vA.t2k-thin90.a2m with 2295 sequences, total weight= 2295 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.863747 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o6vA/info/1o6vA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o6vA/nostruct-align/1o6vA.t2k-thin90.a2m.gz, have 6898 columns in 33 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h6hA/nostruct-align/1h6hA.t2k-thin90.a2m.gz
# 1h6hA.t2k-thin90.a2m with 70 sequences, total weight= 70 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07816 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h6hA/info/1h6hA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h6hA/nostruct-align/1h6hA.t2k-thin90.a2m.gz, have 7041 columns in 34 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ugxA/nostruct-align/1ugxA.t2k-thin90.a2m.gz
# 1ugxA.t2k-thin90.a2m with 178 sequences, total weight= 51.102 avg weight= 0.28709 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30034 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ugxA/info/1ugxA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1ugxA/nostruct-align/1ugxA.t2k-thin90.a2m.gz, have 7174 columns in 35 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fx2A/nostruct-align/1fx2A.t2k-thin90.a2m.gz
# 1fx2A.t2k-thin90.a2m with 181 sequences, total weight= 177.597 avg weight= 0.9812 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fx2A/info/1fx2A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fx2A/nostruct-align/1fx2A.t2k-thin90.a2m.gz, have 7409 columns in 36 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gx3A/nostruct-align/1gx3A.t2k-thin90.a2m.gz
# 1gx3A.t2k-thin90.a2m with 52 sequences, total weight= 52 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27299 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gx3A/info/1gx3A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gx3A/nostruct-align/1gx3A.t2k-thin90.a2m.gz, have 7685 columns in 37 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jhjA/nostruct-align/1jhjA.t2k-thin90.a2m.gz
# 1jhjA.t2k-thin90.a2m with 22 sequences, total weight= 18.2625 avg weight= 0.830112 27 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jhjA/info/1jhjA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jhjA/nostruct-align/1jhjA.t2k-thin90.a2m.gz, have 7846 columns in 38 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kwgA/nostruct-align/1kwgA.t2k-thin90.a2m.gz
# 1kwgA.t2k-thin90.a2m with 86 sequences, total weight= 86 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22448 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kwgA/info/1kwgA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kwgA/nostruct-align/1kwgA.t2k-thin90.a2m.gz, have 8490 columns in 39 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uf5A/nostruct-align/1uf5A.t2k-thin90.a2m.gz
# 1uf5A.t2k-thin90.a2m with 437 sequences, total weight= 437 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19416 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uf5A/info/1uf5A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uf5A/nostruct-align/1uf5A.t2k-thin90.a2m.gz, have 8793 columns in 40 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1z/1z0pA/nostruct-align/1z0pA.t2k-thin90.a2m.gz
# 1z0pA.t2k-thin90.a2m with 7 sequences, total weight= 2.84927 avg weight= 0.407038 11 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1z/1z0pA/info/1z0pA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1z/1z0pA/nostruct-align/1z0pA.t2k-thin90.a2m.gz, have 8866 columns in 41 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p6oA/nostruct-align/1p6oA.t2k-thin90.a2m.gz
# 1p6oA.t2k-thin90.a2m with 352 sequences, total weight= 153.333 avg weight= 0.435605 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30134 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p6oA/info/1p6oA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1p6oA/nostruct-align/1p6oA.t2k-thin90.a2m.gz, have 9022 columns in 42 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dowA/nostruct-align/1dowA.t2k-thin90.a2m.gz
# 1dowA.t2k-thin90.a2m with 20 sequences, total weight= 12.4493 avg weight= 0.622464 25 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dowA/info/1dowA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dowA/nostruct-align/1dowA.t2k-thin90.a2m.gz, have 9227 columns in 43 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vprA/nostruct-align/1vprA.t2k-thin90.a2m.gz
# 1vprA.t2k-thin90.a2m with 13 sequences, total weight= 2.32406 avg weight= 0.178773 11 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vprA/info/1vprA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vprA/nostruct-align/1vprA.t2k-thin90.a2m.gz, have 9578 columns in 44 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vpdA/nostruct-align/1vpdA.t2k-thin90.a2m.gz
# 1vpdA.t2k-thin90.a2m with 1043 sequences, total weight= 1043 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12666 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vpdA/info/1vpdA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vpdA/nostruct-align/1vpdA.t2k-thin90.a2m.gz, have 9872 columns in 45 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qf8A/nostruct-align/1qf8A.t2k-thin90.a2m.gz
# 1qf8A.t2k-thin90.a2m with 28 sequences, total weight= 7.31921 avg weight= 0.2614 26 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qf8A/info/1qf8A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qf8A/nostruct-align/1qf8A.t2k-thin90.a2m.gz, have 10039 columns in 46 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i4uA/nostruct-align/1i4uA.t2k-thin90.a2m.gz
# 1i4uA.t2k-thin90.a2m with 84 sequences, total weight= 84 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.06382 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i4uA/info/1i4uA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i4uA/nostruct-align/1i4uA.t2k-thin90.a2m.gz, have 10220 columns in 47 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xjvA/nostruct-align/1xjvA.t2k-thin90.a2m.gz
# 1xjvA.t2k-thin90.a2m with 29 sequences, total weight= 25.5796 avg weight= 0.882056 23 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xjvA/info/1xjvA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1xjvA/nostruct-align/1xjvA.t2k-thin90.a2m.gz, have 10511 columns in 48 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1ytvA/nostruct-align/1ytvA.t2k-thin90.a2m.gz
# 1ytvA.t2k-thin90.a2m with 652 sequences, total weight= 652 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.905442 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1ytvA/info/1ytvA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1y/1ytvA/nostruct-align/1ytvA.t2k-thin90.a2m.gz, have 10877 columns in 49 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m0wA/nostruct-align/1m0wA.t2k-thin90.a2m.gz
# 1m0wA.t2k-thin90.a2m with 30 sequences, total weight= 14.144 avg weight= 0.471467 29 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m0wA/info/1m0wA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m0wA/nostruct-align/1m0wA.t2k-thin90.a2m.gz, have 11358 columns in 50 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/4u/4uagA/nostruct-align/4uagA.t2k-thin90.a2m.gz
# 4uagA.t2k-thin90.a2m with 234 sequences, total weight= 234 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15262 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/4u/4uagA/info/4uagA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/4u/4uagA/nostruct-align/4uagA.t2k-thin90.a2m.gz, have 11787 columns in 51 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vpbA/nostruct-align/1vpbA.t2k-thin90.a2m.gz
# 1vpbA.t2k-thin90.a2m with 301 sequences, total weight= 301 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19493 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vpbA/info/1vpbA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vpbA/nostruct-align/1vpbA.t2k-thin90.a2m.gz, have 12224 columns in 52 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l9xA/nostruct-align/1l9xA.t2k-thin90.a2m.gz
# 1l9xA.t2k-thin90.a2m with 193 sequences, total weight= 162.188 avg weight= 0.840352 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l9xA/info/1l9xA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1l/1l9xA/nostruct-align/1l9xA.t2k-thin90.a2m.gz, have 12512 columns in 53 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rb9/nostruct-align/1rb9.t2k-thin90.a2m.gz
# 1rb9.t2k-thin90.a2m with 120 sequences, total weight= 8.91139 avg weight= 0.0742616 36 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rb9/info/1rb9.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rb9/nostruct-align/1rb9.t2k-thin90.a2m.gz, have 12564 columns in 54 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n71A/nostruct-align/1n71A.t2k-thin90.a2m.gz
# 1n71A.t2k-thin90.a2m with 147 sequences, total weight= 147 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25876 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n71A/info/1n71A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n71A/nostruct-align/1n71A.t2k-thin90.a2m.gz, have 12744 columns in 55 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t7rA/nostruct-align/1t7rA.t2k-thin90.a2m.gz
# 1t7rA.t2k-thin90.a2m with 421 sequences, total weight= 421 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25853 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t7rA/info/1t7rA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t7rA/nostruct-align/1t7rA.t2k-thin90.a2m.gz, have 12994 columns in 56 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pj5A/nostruct-align/1pj5A.t2k-thin90.a2m.gz
# 1pj5A.t2k-thin90.a2m with 822 sequences, total weight= 822 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12704 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pj5A/info/1pj5A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pj5A/nostruct-align/1pj5A.t2k-thin90.a2m.gz, have 13821 columns in 57 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vdkA/nostruct-align/1vdkA.t2k-thin90.a2m.gz
# 1vdkA.t2k-thin90.a2m with 1235 sequences, total weight= 238.293 avg weight= 0.19295 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31362 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vdkA/info/1vdkA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vdkA/nostruct-align/1vdkA.t2k-thin90.a2m.gz, have 14279 columns in 58 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2s/2sli/nostruct-align/2sli.t2k-thin90.a2m.gz
# 2sli.t2k-thin90.a2m with 94 sequences, total weight= 94 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09036 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2s/2sli/info/2sli.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/2s/2sli/nostruct-align/2sli.t2k-thin90.a2m.gz, have 14958 columns in 59 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qs1A/nostruct-align/1qs1A.t2k-thin90.a2m.gz
# 1qs1A.t2k-thin90.a2m with 25 sequences, total weight= 17.3671 avg weight= 0.694683 18 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qs1A/info/1qs1A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qs1A/nostruct-align/1qs1A.t2k-thin90.a2m.gz, have 15360 columns in 60 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h4gA/nostruct-align/1h4gA.t2k-thin90.a2m.gz
# 1h4gA.t2k-thin90.a2m with 93 sequences, total weight= 11.449 avg weight= 0.123108 31 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h4gA/info/1h4gA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h4gA/nostruct-align/1h4gA.t2k-thin90.a2m.gz, have 15566 columns in 61 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v8cA/nostruct-align/1v8cA.t2k-thin90.a2m.gz
# 1v8cA.t2k-thin90.a2m with 107 sequences, total weight= 13.4683 avg weight= 0.125872 17 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v8cA/info/1v8cA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v8cA/nostruct-align/1v8cA.t2k-thin90.a2m.gz, have 15731 columns in 62 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mk4A/nostruct-align/1mk4A.t2k-thin90.a2m.gz
# 1mk4A.t2k-thin90.a2m with 346 sequences, total weight= 346 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.936917 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mk4A/info/1mk4A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mk4A/nostruct-align/1mk4A.t2k-thin90.a2m.gz, have 15888 columns in 63 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nh8A/nostruct-align/1nh8A.t2k-thin90.a2m.gz
# 1nh8A.t2k-thin90.a2m with 90 sequences, total weight= 22.8084 avg weight= 0.253427 39 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nh8A/info/1nh8A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nh8A/nostruct-align/1nh8A.t2k-thin90.a2m.gz, have 16164 columns in 64 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vkpA/nostruct-align/1vkpA.t2k-thin90.a2m.gz
# 1vkpA.t2k-thin90.a2m with 68 sequences, total weight= 20.9639 avg weight= 0.308293 38 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vkpA/info/1vkpA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vkpA/nostruct-align/1vkpA.t2k-thin90.a2m.gz, have 16529 columns in 65 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2s/2spcA/nostruct-align/2spcA.t2k-thin90.a2m.gz
# 2spcA.t2k-thin90.a2m with 317 sequences, total weight= 317 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.06589 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2s/2spcA/info/2spcA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/2s/2spcA/nostruct-align/2spcA.t2k-thin90.a2m.gz, have 16636 columns in 66 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1yb3A/nostruct-align/1yb3A.t2k-thin90.a2m.gz
# 1yb3A.t2k-thin90.a2m with 4 sequences, total weight= 2.68475 avg weight= 0.671187 11 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1yb3A/info/1yb3A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1y/1yb3A/nostruct-align/1yb3A.t2k-thin90.a2m.gz, have 16802 columns in 67 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mgtA/nostruct-align/1mgtA.t2k-thin90.a2m.gz
# 1mgtA.t2k-thin90.a2m with 230 sequences, total weight= 135.58 avg weight= 0.589479 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30131 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mgtA/info/1mgtA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mgtA/nostruct-align/1mgtA.t2k-thin90.a2m.gz, have 16971 columns in 68 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rutX/nostruct-align/1rutX.t2k-thin90.a2m.gz
# 1rutX.t2k-thin90.a2m with 532 sequences, total weight= 525.869 avg weight= 0.988476 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rutX/info/1rutX.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rutX/nostruct-align/1rutX.t2k-thin90.a2m.gz, have 17128 columns in 69 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1ht6A/nostruct-align/1ht6A.t2k-thin90.a2m.gz
# 1ht6A.t2k-thin90.a2m with 640 sequences, total weight= 640 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11898 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1ht6A/info/1ht6A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1h/1ht6A/nostruct-align/1ht6A.t2k-thin90.a2m.gz, have 17532 columns in 70 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ok7A/nostruct-align/1ok7A.t2k-thin90.a2m.gz
# 1ok7A.t2k-thin90.a2m with 202 sequences, total weight= 79.5904 avg weight= 0.394012 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30179 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ok7A/info/1ok7A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1ok7A/nostruct-align/1ok7A.t2k-thin90.a2m.gz, have 17898 columns in 71 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1czpA/nostruct-align/1czpA.t2k-thin90.a2m.gz
# 1czpA.t2k-thin90.a2m with 255 sequences, total weight= 82.6418 avg weight= 0.324086 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30073 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1czpA/info/1czpA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1c/1czpA/nostruct-align/1czpA.t2k-thin90.a2m.gz, have 17996 columns in 72 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ojhA/nostruct-align/1ojhA.t2k-thin90.a2m.gz
# 1ojhA.t2k-thin90.a2m with 5 sequences, total weight= 3.83473 avg weight= 0.766947 11 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ojhA/info/1ojhA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1ojhA/nostruct-align/1ojhA.t2k-thin90.a2m.gz, have 18048 columns in 73 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1me4A/nostruct-align/1me4A.t2k-thin90.a2m.gz
# 1me4A.t2k-thin90.a2m with 572 sequences, total weight= 139.941 avg weight= 0.244653 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30459 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1me4A/info/1me4A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1me4A/nostruct-align/1me4A.t2k-thin90.a2m.gz, have 18263 columns in 74 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g6xA/nostruct-align/1g6xA.t2k-thin90.a2m.gz
# 1g6xA.t2k-thin90.a2m with 217 sequences, total weight= 34.3004 avg weight= 0.158066 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g6xA/info/1g6xA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1g6xA/nostruct-align/1g6xA.t2k-thin90.a2m.gz, have 18321 columns in 75 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1x99A/nostruct-align/1x99A.t2k-thin90.a2m.gz
# 1x99A.t2k-thin90.a2m with 9 sequences, total weight= 4.25346 avg weight= 0.472606 15 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1x99A/info/1x99A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1x99A/nostruct-align/1x99A.t2k-thin90.a2m.gz, have 18466 columns in 76 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ogiA/nostruct-align/1ogiA.t2k-thin90.a2m.gz
# 1ogiA.t2k-thin90.a2m with 595 sequences, total weight= 595 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09316 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ogiA/info/1ogiA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1ogiA/nostruct-align/1ogiA.t2k-thin90.a2m.gz, have 18761 columns in 77 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jiwI/nostruct-align/1jiwI.t2k-thin90.a2m.gz
# 1jiwI.t2k-thin90.a2m with 16 sequences, total weight= 8.67997 avg weight= 0.542498 23 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jiwI/info/1jiwI.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jiwI/nostruct-align/1jiwI.t2k-thin90.a2m.gz, have 18866 columns in 78 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pe1A/nostruct-align/1pe1A.t2k-thin90.a2m.gz
# 1pe1A.t2k-thin90.a2m with 170 sequences, total weight= 20.8427 avg weight= 0.122604 40 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pe1A/info/1pe1A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pe1A/nostruct-align/1pe1A.t2k-thin90.a2m.gz, have 19124 columns in 79 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mf7A/nostruct-align/1mf7A.t2k-thin90.a2m.gz
# 1mf7A.t2k-thin90.a2m with 392 sequences, total weight= 392 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15148 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mf7A/info/1mf7A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mf7A/nostruct-align/1mf7A.t2k-thin90.a2m.gz, have 19318 columns in 80 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pyoB/nostruct-align/1pyoB.t2k-thin90.a2m.gz
# 1pyoB.t2k-thin90.a2m with 72 sequences, total weight= 23.9613 avg weight= 0.332796 38 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pyoB/info/1pyoB.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pyoB/nostruct-align/1pyoB.t2k-thin90.a2m.gz, have 19416 columns in 81 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tl9A/nostruct-align/1tl9A.t2k-thin90.a2m.gz
# 1tl9A.t2k-thin90.a2m with 174 sequences, total weight= 87.4997 avg weight= 0.502872 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30048 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tl9A/info/1tl9A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tl9A/nostruct-align/1tl9A.t2k-thin90.a2m.gz, have 19737 columns in 82 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ob8A/nostruct-align/1ob8A.t2k-thin90.a2m.gz
# 1ob8A.t2k-thin90.a2m with 18 sequences, total weight= 13.7205 avg weight= 0.762249 24 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ob8A/info/1ob8A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1ob8A/nostruct-align/1ob8A.t2k-thin90.a2m.gz, have 19856 columns in 83 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hxrA/nostruct-align/1hxrA.t2k-thin90.a2m.gz
# 1hxrA.t2k-thin90.a2m with 7 sequences, total weight= 6.9318 avg weight= 0.990257 12 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hxrA/info/1hxrA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hxrA/nostruct-align/1hxrA.t2k-thin90.a2m.gz, have 19963 columns in 84 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g61A/nostruct-align/1g61A.t2k-thin90.a2m.gz
# 1g61A.t2k-thin90.a2m with 41 sequences, total weight= 10.4709 avg weight= 0.255388 28 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g61A/info/1g61A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1g61A/nostruct-align/1g61A.t2k-thin90.a2m.gz, have 20188 columns in 85 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1snrA/nostruct-align/1snrA.t2k-thin90.a2m.gz
# 1snrA.t2k-thin90.a2m with 287 sequences, total weight= 287 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29794 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1snrA/info/1snrA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1s/1snrA/nostruct-align/1snrA.t2k-thin90.a2m.gz, have 20524 columns in 86 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vc4A/nostruct-align/1vc4A.t2k-thin90.a2m.gz
# 1vc4A.t2k-thin90.a2m with 455 sequences, total weight= 30.9228 avg weight= 0.0679621 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vc4A/info/1vc4A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vc4A/nostruct-align/1vc4A.t2k-thin90.a2m.gz, have 20778 columns in 87 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oxdA/nostruct-align/1oxdA.t2k-thin90.a2m.gz
# 1oxdA.t2k-thin90.a2m with 46 sequences, total weight= 9.46174 avg weight= 0.20569 26 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oxdA/info/1oxdA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oxdA/nostruct-align/1oxdA.t2k-thin90.a2m.gz, have 21004 columns in 88 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1co6A/nostruct-align/1co6A.t2k-thin90.a2m.gz
# 1co6A.t2k-thin90.a2m with 228 sequences, total weight= 49.1557 avg weight= 0.215595 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1co6A/info/1co6A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1c/1co6A/nostruct-align/1co6A.t2k-thin90.a2m.gz, have 21111 columns in 89 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1ftrA/nostruct-align/1ftrA.t2k-thin90.a2m.gz
# 1ftrA.t2k-thin90.a2m with 14 sequences, total weight= 4.36422 avg weight= 0.31173 19 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1ftrA/info/1ftrA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1f/1ftrA/nostruct-align/1ftrA.t2k-thin90.a2m.gz, have 21407 columns in 90 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sjwA/nostruct-align/1sjwA.t2k-thin90.a2m.gz
# 1sjwA.t2k-thin90.a2m with 36 sequences, total weight= 36 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22418 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sjwA/info/1sjwA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sjwA/nostruct-align/1sjwA.t2k-thin90.a2m.gz, have 21549 columns in 91 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pbjA/nostruct-align/1pbjA.t2k-thin90.a2m.gz
# 1pbjA.t2k-thin90.a2m with 942 sequences, total weight= 942 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23103 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pbjA/info/1pbjA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pbjA/nostruct-align/1pbjA.t2k-thin90.a2m.gz, have 21669 columns in 92 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g8mA/nostruct-align/1g8mA.t2k-thin90.a2m.gz
# 1g8mA.t2k-thin90.a2m with 130 sequences, total weight= 13.3371 avg weight= 0.102593 33 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g8mA/info/1g8mA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1g8mA/nostruct-align/1g8mA.t2k-thin90.a2m.gz, have 22259 columns in 93 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vr5A/nostruct-align/1vr5A.t2k-thin90.a2m.gz
# 1vr5A.t2k-thin90.a2m with 1085 sequences, total weight= 1085 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05444 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vr5A/info/1vr5A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vr5A/nostruct-align/1vr5A.t2k-thin90.a2m.gz, have 22795 columns in 94 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vm9A/nostruct-align/1vm9A.t2k-thin90.a2m.gz
# 1vm9A.t2k-thin90.a2m with 454 sequences, total weight= 370.816 avg weight= 0.816775 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30221 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vm9A/info/1vm9A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vm9A/nostruct-align/1vm9A.t2k-thin90.a2m.gz, have 22904 columns in 95 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uscA/nostruct-align/1uscA.t2k-thin90.a2m.gz
# 1uscA.t2k-thin90.a2m with 159 sequences, total weight= 159 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29483 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uscA/info/1uscA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uscA/nostruct-align/1uscA.t2k-thin90.a2m.gz, have 23082 columns in 96 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jy1A/nostruct-align/1jy1A.t2k-thin90.a2m.gz
# 1jy1A.t2k-thin90.a2m with 17 sequences, total weight= 16.7591 avg weight= 0.985831 17 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jy1A/info/1jy1A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jy1A/nostruct-align/1jy1A.t2k-thin90.a2m.gz, have 23521 columns in 97 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tgsI/nostruct-align/1tgsI.t2k-thin90.a2m.gz
# 1tgsI.t2k-thin90.a2m with 134 sequences, total weight= 45.755 avg weight= 0.341455 44 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tgsI/info/1tgsI.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tgsI/nostruct-align/1tgsI.t2k-thin90.a2m.gz, have 23577 columns in 98 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i27A/nostruct-align/1i27A.t2k-thin90.a2m.gz
# 1i27A.t2k-thin90.a2m with 6 sequences, total weight= 3.57596 avg weight= 0.595994 11 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i27A/info/1i27A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i27A/nostruct-align/1i27A.t2k-thin90.a2m.gz, have 23650 columns in 99 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kjwA/nostruct-align/1kjwA.t2k-thin90.a2m.gz
# 1kjwA.t2k-thin90.a2m with 186 sequences, total weight= 186 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25183 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kjwA/info/1kjwA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kjwA/nostruct-align/1kjwA.t2k-thin90.a2m.gz, have 23942 columns in 100 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fpoA/nostruct-align/1fpoA.t2k-thin90.a2m.gz
# 1fpoA.t2k-thin90.a2m with 271 sequences, total weight= 234.691 avg weight= 0.866017 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3006 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fpoA/info/1fpoA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fpoA/nostruct-align/1fpoA.t2k-thin90.a2m.gz, have 24113 columns in 101 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qsaA/nostruct-align/1qsaA.t2k-thin90.a2m.gz
# 1qsaA.t2k-thin90.a2m with 271 sequences, total weight= 271 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10587 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qsaA/info/1qsaA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qsaA/nostruct-align/1qsaA.t2k-thin90.a2m.gz, have 24731 columns in 102 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gwmA/nostruct-align/1gwmA.t2k-thin90.a2m.gz
# 1gwmA.t2k-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.953949 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gwmA/info/1gwmA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gwmA/nostruct-align/1gwmA.t2k-thin90.a2m.gz, have 24884 columns in 103 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vjvA/nostruct-align/1vjvA.t2k-thin90.a2m.gz
# 1vjvA.t2k-thin90.a2m with 604 sequences, total weight= 604 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.06465 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vjvA/info/1vjvA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vjvA/nostruct-align/1vjvA.t2k-thin90.a2m.gz, have 25251 columns in 104 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nlqA/nostruct-align/1nlqA.t2k-thin90.a2m.gz
# 1nlqA.t2k-thin90.a2m with 16 sequences, total weight= 6.92879 avg weight= 0.433049 19 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nlqA/info/1nlqA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nlqA/nostruct-align/1nlqA.t2k-thin90.a2m.gz, have 25356 columns in 105 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1b2pA/nostruct-align/1b2pA.t2k-thin90.a2m.gz
# 1b2pA.t2k-thin90.a2m with 129 sequences, total weight= 41.2302 avg weight= 0.319614 41 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1b2pA/info/1b2pA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1b/1b2pA/nostruct-align/1b2pA.t2k-thin90.a2m.gz, have 25475 columns in 106 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fvkA/nostruct-align/1fvkA.t2k-thin90.a2m.gz
# 1fvkA.t2k-thin90.a2m with 95 sequences, total weight= 95 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17875 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fvkA/info/1fvkA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fvkA/nostruct-align/1fvkA.t2k-thin90.a2m.gz, have 25663 columns in 107 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1ymtA/nostruct-align/1ymtA.t2k-thin90.a2m.gz
# 1ymtA.t2k-thin90.a2m with 584 sequences, total weight= 584 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08722 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1ymtA/info/1ymtA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1y/1ymtA/nostruct-align/1ymtA.t2k-thin90.a2m.gz, have 25898 columns in 108 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pmi/nostruct-align/1pmi.t2k-thin90.a2m.gz
# 1pmi.t2k-thin90.a2m with 72 sequences, total weight= 49.5917 avg weight= 0.688774 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pmi/info/1pmi.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pmi/nostruct-align/1pmi.t2k-thin90.a2m.gz, have 26338 columns in 109 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uaiA/nostruct-align/1uaiA.t2k-thin90.a2m.gz
# 1uaiA.t2k-thin90.a2m with 27 sequences, total weight= 19.8971 avg weight= 0.736929 29 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uaiA/info/1uaiA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uaiA/nostruct-align/1uaiA.t2k-thin90.a2m.gz, have 26561 columns in 110 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o8xA/nostruct-align/1o8xA.t2k-thin90.a2m.gz
# 1o8xA.t2k-thin90.a2m with 370 sequences, total weight= 370 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19091 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o8xA/info/1o8xA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o8xA/nostruct-align/1o8xA.t2k-thin90.a2m.gz, have 26704 columns in 111 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nulA/nostruct-align/1nulA.t2k-thin90.a2m.gz
# 1nulA.t2k-thin90.a2m with 331 sequences, total weight= 309.96 avg weight= 0.936435 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30036 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nulA/info/1nulA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nulA/nostruct-align/1nulA.t2k-thin90.a2m.gz, have 26846 columns in 112 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wjxA/nostruct-align/1wjxA.t2k-thin90.a2m.gz
# 1wjxA.t2k-thin90.a2m with 165 sequences, total weight= 7.10262 avg weight= 0.0430462 30 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wjxA/info/1wjxA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1wjxA/nostruct-align/1wjxA.t2k-thin90.a2m.gz, have 26958 columns in 113 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tca/nostruct-align/1tca.t2k-thin90.a2m.gz
# 1tca.t2k-thin90.a2m with 32 sequences, total weight= 32 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22918 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tca/info/1tca.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tca/nostruct-align/1tca.t2k-thin90.a2m.gz, have 27275 columns in 114 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lugA/nostruct-align/1lugA.t2k-thin90.a2m.gz
# 1lugA.t2k-thin90.a2m with 162 sequences, total weight= 93.7 avg weight= 0.578395 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30082 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lugA/info/1lugA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lugA/nostruct-align/1lugA.t2k-thin90.a2m.gz, have 27534 columns in 115 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wmhB/nostruct-align/1wmhB.t2k-thin90.a2m.gz
# 1wmhB.t2k-thin90.a2m with 16 sequences, total weight= 4.0099 avg weight= 0.250619 17 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wmhB/info/1wmhB.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1wmhB/nostruct-align/1wmhB.t2k-thin90.a2m.gz, have 27616 columns in 116 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oaiA/nostruct-align/1oaiA.t2k-thin90.a2m.gz
# 1oaiA.t2k-thin90.a2m with 11 sequences, total weight= 7.01955 avg weight= 0.638141 19 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oaiA/info/1oaiA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oaiA/nostruct-align/1oaiA.t2k-thin90.a2m.gz, have 27675 columns in 117 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jr8A/nostruct-align/1jr8A.t2k-thin90.a2m.gz
# 1jr8A.t2k-thin90.a2m with 39 sequences, total weight= 30.4637 avg weight= 0.78112 34 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jr8A/info/1jr8A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jr8A/nostruct-align/1jr8A.t2k-thin90.a2m.gz, have 27780 columns in 118 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j1nA/nostruct-align/1j1nA.t2k-thin90.a2m.gz
# 1j1nA.t2k-thin90.a2m with 84 sequences, total weight= 84 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.927292 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j1nA/info/1j1nA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j1nA/nostruct-align/1j1nA.t2k-thin90.a2m.gz, have 28272 columns in 119 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v58A/nostruct-align/1v58A.t2k-thin90.a2m.gz
# 1v58A.t2k-thin90.a2m with 127 sequences, total weight= 127 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15683 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v58A/info/1v58A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v58A/nostruct-align/1v58A.t2k-thin90.a2m.gz, have 28501 columns in 120 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w3oA/nostruct-align/1w3oA.t2k-thin90.a2m.gz
# 1w3oA.t2k-thin90.a2m with 52 sequences, total weight= 38.3536 avg weight= 0.73757 31 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w3oA/info/1w3oA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1w3oA/nostruct-align/1w3oA.t2k-thin90.a2m.gz, have 28705 columns in 121 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1u4gA/nostruct-align/1u4gA.t2k-thin90.a2m.gz
# 1u4gA.t2k-thin90.a2m with 109 sequences, total weight= 53.3252 avg weight= 0.489222 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1u4gA/info/1u4gA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1u4gA/nostruct-align/1u4gA.t2k-thin90.a2m.gz, have 29003 columns in 122 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kllA/nostruct-align/1kllA.t2k-thin90.a2m.gz
# 1kllA.t2k-thin90.a2m with 225 sequences, total weight= 225 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01409 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kllA/info/1kllA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kllA/nostruct-align/1kllA.t2k-thin90.a2m.gz, have 29131 columns in 123 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eexA/nostruct-align/1eexA.t2k-thin90.a2m.gz
# 1eexA.t2k-thin90.a2m with 7 sequences, total weight= 2.76372 avg weight= 0.394817 12 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eexA/info/1eexA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1eexA/nostruct-align/1eexA.t2k-thin90.a2m.gz, have 29682 columns in 124 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1roaA/nostruct-align/1roaA.t2k-thin90.a2m.gz
# 1roaA.t2k-thin90.a2m with 145 sequences, total weight= 103.733 avg weight= 0.715399 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30053 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1roaA/info/1roaA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1roaA/nostruct-align/1roaA.t2k-thin90.a2m.gz, have 29793 columns in 125 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1atg/nostruct-align/1atg.t2k-thin90.a2m.gz
# 1atg.t2k-thin90.a2m with 114 sequences, total weight= 95.3834 avg weight= 0.836697 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1atg/info/1atg.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1a/1atg/nostruct-align/1atg.t2k-thin90.a2m.gz, have 30024 columns in 126 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f74A/nostruct-align/1f74A.t2k-thin90.a2m.gz
# 1f74A.t2k-thin90.a2m with 309 sequences, total weight= 178.142 avg weight= 0.57651 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30276 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f74A/info/1f74A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f74A/nostruct-align/1f74A.t2k-thin90.a2m.gz, have 30317 columns in 127 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v8hA/nostruct-align/1v8hA.t2k-thin90.a2m.gz
# 1v8hA.t2k-thin90.a2m with 37 sequences, total weight= 16.7347 avg weight= 0.452289 32 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v8hA/info/1v8hA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v8hA/nostruct-align/1v8hA.t2k-thin90.a2m.gz, have 30423 columns in 128 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n62B/nostruct-align/1n62B.t2k-thin90.a2m.gz
# 1n62B.t2k-thin90.a2m with 263 sequences, total weight= 263 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29807 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n62B/info/1n62B.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n62B/nostruct-align/1n62B.t2k-thin90.a2m.gz, have 31227 columns in 129 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gpiA/nostruct-align/1gpiA.t2k-thin90.a2m.gz
# 1gpiA.t2k-thin90.a2m with 54 sequences, total weight= 6.46478 avg weight= 0.119718 24 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gpiA/info/1gpiA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gpiA/nostruct-align/1gpiA.t2k-thin90.a2m.gz, have 31658 columns in 130 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uylA/nostruct-align/1uylA.t2k-thin90.a2m.gz
# 1uylA.t2k-thin90.a2m with 273 sequences, total weight= 27.0302 avg weight= 0.0990117 45 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uylA/info/1uylA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uylA/nostruct-align/1uylA.t2k-thin90.a2m.gz, have 31865 columns in 131 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f2tA/nostruct-align/1f2tA.t2k-thin90.a2m.gz
# 1f2tA.t2k-thin90.a2m with 1040 sequences, total weight= 1040 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0006 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f2tA/info/1f2tA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f2tA/nostruct-align/1f2tA.t2k-thin90.a2m.gz, have 32010 columns in 132 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hxn/nostruct-align/1hxn.t2k-thin90.a2m.gz
# 1hxn.t2k-thin90.a2m with 127 sequences, total weight= 62.1953 avg weight= 0.489727 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hxn/info/1hxn.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hxn/nostruct-align/1hxn.t2k-thin90.a2m.gz, have 32220 columns in 133 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tn6A/nostruct-align/1tn6A.t2k-thin90.a2m.gz
# 1tn6A.t2k-thin90.a2m with 280 sequences, total weight= 280 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0118 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tn6A/info/1tn6A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tn6A/nostruct-align/1tn6A.t2k-thin90.a2m.gz, have 32535 columns in 134 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qo7A/nostruct-align/1qo7A.t2k-thin90.a2m.gz
# 1qo7A.t2k-thin90.a2m with 169 sequences, total weight= 169 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13996 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qo7A/info/1qo7A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qo7A/nostruct-align/1qo7A.t2k-thin90.a2m.gz, have 32920 columns in 135 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1y7rA/nostruct-align/1y7rA.t2k-thin90.a2m.gz
# 1y7rA.t2k-thin90.a2m with 634 sequences, total weight= 634 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08645 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1y7rA/info/1y7rA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1y/1y7rA/nostruct-align/1y7rA.t2k-thin90.a2m.gz, have 33053 columns in 136 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lv7A/nostruct-align/1lv7A.t2k-thin90.a2m.gz
# 1lv7A.t2k-thin90.a2m with 1779 sequences, total weight= 1779 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09645 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lv7A/info/1lv7A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lv7A/nostruct-align/1lv7A.t2k-thin90.a2m.gz, have 33304 columns in 137 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2p/2por/nostruct-align/2por.t2k-thin90.a2m.gz
# 2por.t2k-thin90.a2m with 65 sequences, total weight= 65 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14684 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2p/2por/info/2por.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/2p/2por/nostruct-align/2por.t2k-thin90.a2m.gz, have 33605 columns in 138 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s9uA/nostruct-align/1s9uA.t2k-thin90.a2m.gz
# 1s9uA.t2k-thin90.a2m with 67 sequences, total weight= 67 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2491 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s9uA/info/1s9uA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1s/1s9uA/nostruct-align/1s9uA.t2k-thin90.a2m.gz, have 33806 columns in 139 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oa8A/nostruct-align/1oa8A.t2k-thin90.a2m.gz
# 1oa8A.t2k-thin90.a2m with 9 sequences, total weight= 6.39758 avg weight= 0.710842 16 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oa8A/info/1oa8A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oa8A/nostruct-align/1oa8A.t2k-thin90.a2m.gz, have 33934 columns in 140 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j8bA/nostruct-align/1j8bA.t2k-thin90.a2m.gz
# 1j8bA.t2k-thin90.a2m with 78 sequences, total weight= 18.6241 avg weight= 0.23877 36 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j8bA/info/1j8bA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j8bA/nostruct-align/1j8bA.t2k-thin90.a2m.gz, have 34026 columns in 141 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w23A/nostruct-align/1w23A.t2k-thin90.a2m.gz
# 1w23A.t2k-thin90.a2m with 266 sequences, total weight= 226.039 avg weight= 0.84977 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30121 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w23A/info/1w23A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1w23A/nostruct-align/1w23A.t2k-thin90.a2m.gz, have 34386 columns in 142 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n2eA/nostruct-align/1n2eA.t2k-thin90.a2m.gz
# 1n2eA.t2k-thin90.a2m with 78 sequences, total weight= 12.6621 avg weight= 0.162335 36 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n2eA/info/1n2eA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n2eA/nostruct-align/1n2eA.t2k-thin90.a2m.gz, have 34674 columns in 143 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eyeA/nostruct-align/1eyeA.t2k-thin90.a2m.gz
# 1eyeA.t2k-thin90.a2m with 160 sequences, total weight= 28.5413 avg weight= 0.178383 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eyeA/info/1eyeA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1eyeA/nostruct-align/1eyeA.t2k-thin90.a2m.gz, have 34930 columns in 144 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nscA/nostruct-align/1nscA.t2k-thin90.a2m.gz
# 1nscA.t2k-thin90.a2m with 20 sequences, total weight= 4.36919 avg weight= 0.218459 19 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nscA/info/1nscA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nscA/nostruct-align/1nscA.t2k-thin90.a2m.gz, have 35320 columns in 145 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hx0A/nostruct-align/1hx0A.t2k-thin90.a2m.gz
# 1hx0A.t2k-thin90.a2m with 261 sequences, total weight= 261 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0911 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hx0A/info/1hx0A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hx0A/nostruct-align/1hx0A.t2k-thin90.a2m.gz, have 35816 columns in 146 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qftA/nostruct-align/1qftA.t2k-thin90.a2m.gz
# 1qftA.t2k-thin90.a2m with 10 sequences, total weight= 10 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11289 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qftA/info/1qftA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qftA/nostruct-align/1qftA.t2k-thin90.a2m.gz, have 35991 columns in 147 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g8aA/nostruct-align/1g8aA.t2k-thin90.a2m.gz
# 1g8aA.t2k-thin90.a2m with 204 sequences, total weight= 204 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1991 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g8aA/info/1g8aA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1g8aA/nostruct-align/1g8aA.t2k-thin90.a2m.gz, have 36218 columns in 148 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1b9mA/nostruct-align/1b9mA.t2k-thin90.a2m.gz
# 1b9mA.t2k-thin90.a2m with 131 sequences, total weight= 76.9227 avg weight= 0.587196 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1b9mA/info/1b9mA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1b/1b9mA/nostruct-align/1b9mA.t2k-thin90.a2m.gz, have 36476 columns in 149 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k2xB/nostruct-align/1k2xB.t2k-thin90.a2m.gz
# 1k2xB.t2k-thin90.a2m with 70 sequences, total weight= 18.6331 avg weight= 0.266187 42 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k2xB/info/1k2xB.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k2xB/nostruct-align/1k2xB.t2k-thin90.a2m.gz, have 36611 columns in 150 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1yfqA/nostruct-align/1yfqA.t2k-thin90.a2m.gz
# 1yfqA.t2k-thin90.a2m with 770 sequences, total weight= 770 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.951211 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1yfqA/info/1yfqA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1y/1yfqA/nostruct-align/1yfqA.t2k-thin90.a2m.gz, have 36953 columns in 151 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xkpC/nostruct-align/1xkpC.t2k-thin90.a2m.gz
# 1xkpC.t2k-thin90.a2m with 7 sequences, total weight= 4.97108 avg weight= 0.710155 16 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xkpC/info/1xkpC.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1xkpC/nostruct-align/1xkpC.t2k-thin90.a2m.gz, have 37079 columns in 152 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dtdB/nostruct-align/1dtdB.t2k-thin90.a2m.gz
# 1dtdB.t2k-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.675221 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dtdB/info/1dtdB.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dtdB/nostruct-align/1dtdB.t2k-thin90.a2m.gz, have 37140 columns in 153 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g8eA/nostruct-align/1g8eA.t2k-thin90.a2m.gz
# 1g8eA.t2k-thin90.a2m with 14 sequences, total weight= 5.58222 avg weight= 0.39873 17 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g8eA/info/1g8eA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1g8eA/nostruct-align/1g8eA.t2k-thin90.a2m.gz, have 37238 columns in 154 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q5zA/nostruct-align/1q5zA.t2k-thin90.a2m.gz
# 1q5zA.t2k-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.588933 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q5zA/info/1q5zA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q5zA/nostruct-align/1q5zA.t2k-thin90.a2m.gz, have 37383 columns in 155 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s99A/nostruct-align/1s99A.t2k-thin90.a2m.gz
# 1s99A.t2k-thin90.a2m with 4 sequences, total weight= 4 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21098 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s99A/info/1s99A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1s/1s99A/nostruct-align/1s99A.t2k-thin90.a2m.gz, have 37569 columns in 156 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w6uA/nostruct-align/1w6uA.t2k-thin90.a2m.gz
# 1w6uA.t2k-thin90.a2m with 5537 sequences, total weight= 924.282 avg weight= 0.166928 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.33449 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w6uA/info/1w6uA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1w6uA/nostruct-align/1w6uA.t2k-thin90.a2m.gz, have 37857 columns in 157 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sluA/nostruct-align/1sluA.t2k-thin90.a2m.gz
# 1sluA.t2k-thin90.a2m with 9 sequences, total weight= 4.41233 avg weight= 0.490259 16 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sluA/info/1sluA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sluA/nostruct-align/1sluA.t2k-thin90.a2m.gz, have 37988 columns in 158 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1itxA/nostruct-align/1itxA.t2k-thin90.a2m.gz
# 1itxA.t2k-thin90.a2m with 295 sequences, total weight= 295 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13608 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1itxA/info/1itxA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1itxA/nostruct-align/1itxA.t2k-thin90.a2m.gz, have 38407 columns in 159 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o97D/nostruct-align/1o97D.t2k-thin90.a2m.gz
# 1o97D.t2k-thin90.a2m with 143 sequences, total weight= 28.5861 avg weight= 0.199903 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o97D/info/1o97D.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o97D/nostruct-align/1o97D.t2k-thin90.a2m.gz, have 38722 columns in 160 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/4e/4eugA/nostruct-align/4eugA.t2k-thin90.a2m.gz
# 4eugA.t2k-thin90.a2m with 154 sequences, total weight= 22.6815 avg weight= 0.147283 43 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/4e/4eugA/info/4eugA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/4e/4eugA/nostruct-align/4eugA.t2k-thin90.a2m.gz, have 38947 columns in 161 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wrrA/nostruct-align/1wrrA.t2k-thin90.a2m.gz
# 1wrrA.t2k-thin90.a2m with 50 sequences, total weight= 13.1431 avg weight= 0.262863 32 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wrrA/info/1wrrA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1wrrA/nostruct-align/1wrrA.t2k-thin90.a2m.gz, have 39242 columns in 162 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vh5A/nostruct-align/1vh5A.t2k-thin90.a2m.gz
# 1vh5A.t2k-thin90.a2m with 148 sequences, total weight= 148 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23487 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vh5A/info/1vh5A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vh5A/nostruct-align/1vh5A.t2k-thin90.a2m.gz, have 39380 columns in 163 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vljA/nostruct-align/1vljA.t2k-thin90.a2m.gz
# 1vljA.t2k-thin90.a2m with 486 sequences, total weight= 486 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24461 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vljA/info/1vljA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vljA/nostruct-align/1vljA.t2k-thin90.a2m.gz, have 39778 columns in 164 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rjdA/nostruct-align/1rjdA.t2k-thin90.a2m.gz
# 1rjdA.t2k-thin90.a2m with 41 sequences, total weight= 41 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26921 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rjdA/info/1rjdA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rjdA/nostruct-align/1rjdA.t2k-thin90.a2m.gz, have 40106 columns in 165 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pwbA/nostruct-align/1pwbA.t2k-thin90.a2m.gz
# 1pwbA.t2k-thin90.a2m with 547 sequences, total weight= 547 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09407 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pwbA/info/1pwbA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pwbA/nostruct-align/1pwbA.t2k-thin90.a2m.gz, have 40257 columns in 166 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cv8/nostruct-align/1cv8.t2k-thin90.a2m.gz
# 1cv8.t2k-thin90.a2m with 5 sequences, total weight= 2.73799 avg weight= 0.547599 10 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cv8/info/1cv8.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cv8/nostruct-align/1cv8.t2k-thin90.a2m.gz, have 40430 columns in 167 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rylA/nostruct-align/1rylA.t2k-thin90.a2m.gz
# 1rylA.t2k-thin90.a2m with 11 sequences, total weight= 11 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22321 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rylA/info/1rylA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rylA/nostruct-align/1rylA.t2k-thin90.a2m.gz, have 40587 columns in 168 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1irdB/nostruct-align/1irdB.t2k-thin90.a2m.gz
# 1irdB.t2k-thin90.a2m with 467 sequences, total weight= 77.9517 avg weight= 0.16692 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30262 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1irdB/info/1irdB.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1irdB/nostruct-align/1irdB.t2k-thin90.a2m.gz, have 40733 columns in 169 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hbnB/nostruct-align/1hbnB.t2k-thin90.a2m.gz
# 1hbnB.t2k-thin90.a2m with 12 sequences, total weight= 3.13705 avg weight= 0.261421 15 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hbnB/info/1hbnB.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hbnB/nostruct-align/1hbnB.t2k-thin90.a2m.gz, have 41175 columns in 170 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j3wA/nostruct-align/1j3wA.t2k-thin90.a2m.gz
# 1j3wA.t2k-thin90.a2m with 28 sequences, total weight= 21.9809 avg weight= 0.785032 26 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j3wA/info/1j3wA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j3wA/nostruct-align/1j3wA.t2k-thin90.a2m.gz, have 41309 columns in 171 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1twdA/nostruct-align/1twdA.t2k-thin90.a2m.gz
# 1twdA.t2k-thin90.a2m with 64 sequences, total weight= 17.9559 avg weight= 0.280561 36 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1twdA/info/1twdA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1twdA/nostruct-align/1twdA.t2k-thin90.a2m.gz, have 41543 columns in 172 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dmhA/nostruct-align/1dmhA.t2k-thin90.a2m.gz
# 1dmhA.t2k-thin90.a2m with 150 sequences, total weight= 55.8904 avg weight= 0.372603 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dmhA/info/1dmhA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dmhA/nostruct-align/1dmhA.t2k-thin90.a2m.gz, have 41852 columns in 173 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xffA/nostruct-align/1xffA.t2k-thin90.a2m.gz
# 1xffA.t2k-thin90.a2m with 681 sequences, total weight= 352.905 avg weight= 0.518216 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30993 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xffA/info/1xffA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1xffA/nostruct-align/1xffA.t2k-thin90.a2m.gz, have 42090 columns in 174 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1ka1A/nostruct-align/1ka1A.t2k-thin90.a2m.gz
# 1ka1A.t2k-thin90.a2m with 330 sequences, total weight= 330 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17148 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1ka1A/info/1ka1A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1ka1A/nostruct-align/1ka1A.t2k-thin90.a2m.gz, have 42444 columns in 175 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pq1A/nostruct-align/1pq1A.t2k-thin90.a2m.gz
# 1pq1A.t2k-thin90.a2m with 53 sequences, total weight= 53 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22746 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pq1A/info/1pq1A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pq1A/nostruct-align/1pq1A.t2k-thin90.a2m.gz, have 42591 columns in 176 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ejdA/nostruct-align/1ejdA.t2k-thin90.a2m.gz
# 1ejdA.t2k-thin90.a2m with 292 sequences, total weight= 59.2996 avg weight= 0.203081 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30077 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ejdA/info/1ejdA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1ejdA/nostruct-align/1ejdA.t2k-thin90.a2m.gz, have 43010 columns in 177 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1el5A/nostruct-align/1el5A.t2k-thin90.a2m.gz
# 1el5A.t2k-thin90.a2m with 715 sequences, total weight= 715 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.780232 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1el5A/info/1el5A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1el5A/nostruct-align/1el5A.t2k-thin90.a2m.gz, have 43395 columns in 178 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ursA/nostruct-align/1ursA.t2k-thin90.a2m.gz
# 1ursA.t2k-thin90.a2m with 380 sequences, total weight= 380 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.922988 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ursA/info/1ursA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1ursA/nostruct-align/1ursA.t2k-thin90.a2m.gz, have 43761 columns in 179 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1svsA/nostruct-align/1svsA.t2k-thin90.a2m.gz
# 1svsA.t2k-thin90.a2m with 439 sequences, total weight= 120.424 avg weight= 0.274315 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30236 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1svsA/info/1svsA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1s/1svsA/nostruct-align/1svsA.t2k-thin90.a2m.gz, have 44077 columns in 180 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q35A/nostruct-align/1q35A.t2k-thin90.a2m.gz
# 1q35A.t2k-thin90.a2m with 251 sequences, total weight= 251 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08248 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q35A/info/1q35A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q35A/nostruct-align/1q35A.t2k-thin90.a2m.gz, have 44394 columns in 181 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gnuA/nostruct-align/1gnuA.t2k-thin90.a2m.gz
# 1gnuA.t2k-thin90.a2m with 50 sequences, total weight= 16.3263 avg weight= 0.326526 26 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gnuA/info/1gnuA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gnuA/nostruct-align/1gnuA.t2k-thin90.a2m.gz, have 44511 columns in 182 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vhh/nostruct-align/1vhh.t2k-thin90.a2m.gz
# 1vhh.t2k-thin90.a2m with 22 sequences, total weight= 3.63095 avg weight= 0.165043 15 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vhh/info/1vhh.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vhh/nostruct-align/1vhh.t2k-thin90.a2m.gz, have 44668 columns in 183 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gcqC/nostruct-align/1gcqC.t2k-thin90.a2m.gz
# 1gcqC.t2k-thin90.a2m with 234 sequences, total weight= 68.4858 avg weight= 0.292674 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gcqC/info/1gcqC.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gcqC/nostruct-align/1gcqC.t2k-thin90.a2m.gz, have 44737 columns in 184 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g2bA/nostruct-align/1g2bA.t2k-thin90.a2m.gz
# 1g2bA.t2k-thin90.a2m with 518 sequences, total weight= 82.2889 avg weight= 0.158859 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g2bA/info/1g2bA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1g2bA/nostruct-align/1g2bA.t2k-thin90.a2m.gz, have 44799 columns in 185 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oi7A/nostruct-align/1oi7A.t2k-thin90.a2m.gz
# 1oi7A.t2k-thin90.a2m with 210 sequences, total weight= 53.0189 avg weight= 0.252471 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oi7A/info/1oi7A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oi7A/nostruct-align/1oi7A.t2k-thin90.a2m.gz, have 45069 columns in 186 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v77A/nostruct-align/1v77A.t2k-thin90.a2m.gz
# 1v77A.t2k-thin90.a2m with 21 sequences, total weight= 21 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29844 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v77A/info/1v77A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v77A/nostruct-align/1v77A.t2k-thin90.a2m.gz, have 45271 columns in 187 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l7lA/nostruct-align/1l7lA.t2k-thin90.a2m.gz
# 1l7lA.t2k-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.98355 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l7lA/info/1l7lA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1l/1l7lA/nostruct-align/1l7lA.t2k-thin90.a2m.gz, have 45392 columns in 188 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rvkA/nostruct-align/1rvkA.t2k-thin90.a2m.gz
# 1rvkA.t2k-thin90.a2m with 347 sequences, total weight= 347 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24603 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rvkA/info/1rvkA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rvkA/nostruct-align/1rvkA.t2k-thin90.a2m.gz, have 45773 columns in 189 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sdsA/nostruct-align/1sdsA.t2k-thin90.a2m.gz
# 1sdsA.t2k-thin90.a2m with 250 sequences, total weight= 95.0103 avg weight= 0.380041 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sdsA/info/1sdsA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sdsA/nostruct-align/1sdsA.t2k-thin90.a2m.gz, have 45888 columns in 190 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xpmA/nostruct-align/1xpmA.t2k-thin90.a2m.gz
# 1xpmA.t2k-thin90.a2m with 395 sequences, total weight= 369.204 avg weight= 0.934693 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30058 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xpmA/info/1xpmA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1xpmA/nostruct-align/1xpmA.t2k-thin90.a2m.gz, have 46277 columns in 191 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ifc/nostruct-align/1ifc.t2k-thin90.a2m.gz
# 1ifc.t2k-thin90.a2m with 126 sequences, total weight= 26.8527 avg weight= 0.213117 38 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ifc/info/1ifc.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1ifc/nostruct-align/1ifc.t2k-thin90.a2m.gz, have 46408 columns in 192 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kolA/nostruct-align/1kolA.t2k-thin90.a2m.gz
# 1kolA.t2k-thin90.a2m with 1015 sequences, total weight= 1015 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18282 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kolA/info/1kolA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kolA/nostruct-align/1kolA.t2k-thin90.a2m.gz, have 46804 columns in 193 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lxjA/nostruct-align/1lxjA.t2k-thin90.a2m.gz
# 1lxjA.t2k-thin90.a2m with 43 sequences, total weight= 20.3459 avg weight= 0.473162 35 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lxjA/info/1lxjA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lxjA/nostruct-align/1lxjA.t2k-thin90.a2m.gz, have 46908 columns in 194 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v54C/nostruct-align/1v54C.t2k-thin90.a2m.gz
# 1v54C.t2k-thin90.a2m with 472 sequences, total weight= 62.1433 avg weight= 0.131659 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v54C/info/1v54C.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v54C/nostruct-align/1v54C.t2k-thin90.a2m.gz, have 47167 columns in 195 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dusA/nostruct-align/1dusA.t2k-thin90.a2m.gz
# 1dusA.t2k-thin90.a2m with 659 sequences, total weight= 659 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.850707 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dusA/info/1dusA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dusA/nostruct-align/1dusA.t2k-thin90.a2m.gz, have 47361 columns in 196 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vl2A/nostruct-align/1vl2A.t2k-thin90.a2m.gz
# 1vl2A.t2k-thin90.a2m with 219 sequences, total weight= 43.739 avg weight= 0.199721 44 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vl2A/info/1vl2A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vl2A/nostruct-align/1vl2A.t2k-thin90.a2m.gz, have 47759 columns in 197 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1viaA/nostruct-align/1viaA.t2k-thin90.a2m.gz
# 1viaA.t2k-thin90.a2m with 506 sequences, total weight= 506 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.946897 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1viaA/info/1viaA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1viaA/nostruct-align/1viaA.t2k-thin90.a2m.gz, have 47920 columns in 198 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pb7A/nostruct-align/1pb7A.t2k-thin90.a2m.gz
# 1pb7A.t2k-thin90.a2m with 444 sequences, total weight= 444 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14405 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pb7A/info/1pb7A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pb7A/nostruct-align/1pb7A.t2k-thin90.a2m.gz, have 48201 columns in 199 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lyvA/nostruct-align/1lyvA.t2k-thin90.a2m.gz
# 1lyvA.t2k-thin90.a2m with 189 sequences, total weight= 94.1943 avg weight= 0.498383 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30078 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lyvA/info/1lyvA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lyvA/nostruct-align/1lyvA.t2k-thin90.a2m.gz, have 48484 columns in 200 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lb3A/nostruct-align/1lb3A.t2k-thin90.a2m.gz
# 1lb3A.t2k-thin90.a2m with 157 sequences, total weight= 71.386 avg weight= 0.454688 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lb3A/info/1lb3A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lb3A/nostruct-align/1lb3A.t2k-thin90.a2m.gz, have 48651 columns in 201 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1c3pA/nostruct-align/1c3pA.t2k-thin90.a2m.gz
# 1c3pA.t2k-thin90.a2m with 239 sequences, total weight= 135.632 avg weight= 0.567497 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30054 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1c3pA/info/1c3pA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1c/1c3pA/nostruct-align/1c3pA.t2k-thin90.a2m.gz, have 49023 columns in 202 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1b8zA/nostruct-align/1b8zA.t2k-thin90.a2m.gz
# 1b8zA.t2k-thin90.a2m with 263 sequences, total weight= 25.5385 avg weight= 0.0971046 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1b8zA/info/1b8zA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1b/1b8zA/nostruct-align/1b8zA.t2k-thin90.a2m.gz, have 49090 columns in 203 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wb4A/nostruct-align/1wb4A.t2k-thin90.a2m.gz
# 1wb4A.t2k-thin90.a2m with 78 sequences, total weight= 78 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.942646 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wb4A/info/1wb4A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1wb4A/nostruct-align/1wb4A.t2k-thin90.a2m.gz, have 49373 columns in 204 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uteA/nostruct-align/1uteA.t2k-thin90.a2m.gz
# 1uteA.t2k-thin90.a2m with 134 sequences, total weight= 134 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.892057 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uteA/info/1uteA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uteA/nostruct-align/1uteA.t2k-thin90.a2m.gz, have 49675 columns in 205 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1ks8A/nostruct-align/1ks8A.t2k-thin90.a2m.gz
# 1ks8A.t2k-thin90.a2m with 160 sequences, total weight= 48.2845 avg weight= 0.301778 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1ks8A/info/1ks8A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1ks8A/nostruct-align/1ks8A.t2k-thin90.a2m.gz, have 50108 columns in 206 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1ssxA/nostruct-align/1ssxA.t2k-thin90.a2m.gz
# 1ssxA.t2k-thin90.a2m with 245 sequences, total weight= 160.622 avg weight= 0.655601 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30114 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1ssxA/info/1ssxA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1s/1ssxA/nostruct-align/1ssxA.t2k-thin90.a2m.gz, have 50306 columns in 207 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ou8A/nostruct-align/1ou8A.t2k-thin90.a2m.gz
# 1ou8A.t2k-thin90.a2m with 27 sequences, total weight= 7.19166 avg weight= 0.266358 23 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ou8A/info/1ou8A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1ou8A/nostruct-align/1ou8A.t2k-thin90.a2m.gz, have 50412 columns in 208 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2b/2bbkL/nostruct-align/2bbkL.t2k-thin90.a2m.gz
# 2bbkL.t2k-thin90.a2m with 6 sequences, total weight= 2.42427 avg weight= 0.404045 12 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2b/2bbkL/info/2bbkL.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/2b/2bbkL/nostruct-align/2bbkL.t2k-thin90.a2m.gz, have 50537 columns in 209 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3c/3chbD/nostruct-align/3chbD.t2k-thin90.a2m.gz
# 3chbD.t2k-thin90.a2m with 4 sequences, total weight= 2.2449 avg weight= 0.561224 10 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3c/3chbD/info/3chbD.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/3c/3chbD/nostruct-align/3chbD.t2k-thin90.a2m.gz, have 50640 columns in 210 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mpgA/nostruct-align/1mpgA.t2k-thin90.a2m.gz
# 1mpgA.t2k-thin90.a2m with 163 sequences, total weight= 163 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22802 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mpgA/info/1mpgA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mpgA/nostruct-align/1mpgA.t2k-thin90.a2m.gz, have 50922 columns in 211 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1so7A/nostruct-align/1so7A.t2k-thin90.a2m.gz
# 1so7A.t2k-thin90.a2m with 66 sequences, total weight= 51.8643 avg weight= 0.785823 43 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1so7A/info/1so7A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1s/1so7A/nostruct-align/1so7A.t2k-thin90.a2m.gz, have 51283 columns in 212 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1os6A/nostruct-align/1os6A.t2k-thin90.a2m.gz
# 1os6A.t2k-thin90.a2m with 29 sequences, total weight= 20.5228 avg weight= 0.707683 31 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1os6A/info/1os6A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1os6A/nostruct-align/1os6A.t2k-thin90.a2m.gz, have 51354 columns in 213 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fjhA/nostruct-align/1fjhA.t2k-thin90.a2m.gz
# 1fjhA.t2k-thin90.a2m with 1233 sequences, total weight= 202.485 avg weight= 0.164221 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31219 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fjhA/info/1fjhA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fjhA/nostruct-align/1fjhA.t2k-thin90.a2m.gz, have 51590 columns in 214 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1obfO/nostruct-align/1obfO.t2k-thin90.a2m.gz
# 1obfO.t2k-thin90.a2m with 1072 sequences, total weight= 46.0578 avg weight= 0.0429643 40 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1obfO/info/1obfO.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1obfO/nostruct-align/1obfO.t2k-thin90.a2m.gz, have 51925 columns in 215 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gvfA/nostruct-align/1gvfA.t2k-thin90.a2m.gz
# 1gvfA.t2k-thin90.a2m with 165 sequences, total weight= 18.1771 avg weight= 0.110164 41 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gvfA/info/1gvfA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gvfA/nostruct-align/1gvfA.t2k-thin90.a2m.gz, have 52198 columns in 216 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pvmA/nostruct-align/1pvmA.t2k-thin90.a2m.gz
# 1pvmA.t2k-thin90.a2m with 909 sequences, total weight= 909 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21109 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pvmA/info/1pvmA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pvmA/nostruct-align/1pvmA.t2k-thin90.a2m.gz, have 52376 columns in 217 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pu6A/nostruct-align/1pu6A.t2k-thin90.a2m.gz
# 1pu6A.t2k-thin90.a2m with 190 sequences, total weight= 184.112 avg weight= 0.969009 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pu6A/info/1pu6A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pu6A/nostruct-align/1pu6A.t2k-thin90.a2m.gz, have 52593 columns in 218 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vfjA/nostruct-align/1vfjA.t2k-thin90.a2m.gz
# 1vfjA.t2k-thin90.a2m with 247 sequences, total weight= 23.0741 avg weight= 0.0934176 44 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vfjA/info/1vfjA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vfjA/nostruct-align/1vfjA.t2k-thin90.a2m.gz, have 52709 columns in 219 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mixA/nostruct-align/1mixA.t2k-thin90.a2m.gz
# 1mixA.t2k-thin90.a2m with 111 sequences, total weight= 111 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2039 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mixA/info/1mixA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mixA/nostruct-align/1mixA.t2k-thin90.a2m.gz, have 52915 columns in 220 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eexB/nostruct-align/1eexB.t2k-thin90.a2m.gz
# 1eexB.t2k-thin90.a2m with 14 sequences, total weight= 7.55162 avg weight= 0.539401 17 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eexB/info/1eexB.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1eexB/nostruct-align/1eexB.t2k-thin90.a2m.gz, have 53093 columns in 221 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i9zA/nostruct-align/1i9zA.t2k-thin90.a2m.gz
# 1i9zA.t2k-thin90.a2m with 77 sequences, total weight= 67.2966 avg weight= 0.873982 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i9zA/info/1i9zA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i9zA/nostruct-align/1i9zA.t2k-thin90.a2m.gz, have 53429 columns in 222 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h16A/nostruct-align/1h16A.t2k-thin90.a2m.gz
# 1h16A.t2k-thin90.a2m with 67 sequences, total weight= 33.1921 avg weight= 0.495404 37 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h16A/info/1h16A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h16A/nostruct-align/1h16A.t2k-thin90.a2m.gz, have 54188 columns in 223 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fnlA/nostruct-align/1fnlA.t2k-thin90.a2m.gz
# 1fnlA.t2k-thin90.a2m with 472 sequences, total weight= 472 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.974758 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fnlA/info/1fnlA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fnlA/nostruct-align/1fnlA.t2k-thin90.a2m.gz, have 54361 columns in 224 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1epxA/nostruct-align/1epxA.t2k-thin90.a2m.gz
# 1epxA.t2k-thin90.a2m with 115 sequences, total weight= 15.662 avg weight= 0.136192 28 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1epxA/info/1epxA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1epxA/nostruct-align/1epxA.t2k-thin90.a2m.gz, have 54718 columns in 225 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i2tA/nostruct-align/1i2tA.t2k-thin90.a2m.gz
# 1i2tA.t2k-thin90.a2m with 47 sequences, total weight= 7.45597 avg weight= 0.158638 24 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i2tA/info/1i2tA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i2tA/nostruct-align/1i2tA.t2k-thin90.a2m.gz, have 54779 columns in 226 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nnlA/nostruct-align/1nnlA.t2k-thin90.a2m.gz
# 1nnlA.t2k-thin90.a2m with 252 sequences, total weight= 252 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.06264 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nnlA/info/1nnlA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nnlA/nostruct-align/1nnlA.t2k-thin90.a2m.gz, have 54984 columns in 227 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v54G/nostruct-align/1v54G.t2k-thin90.a2m.gz
# 1v54G.t2k-thin90.a2m with 21 sequences, total weight= 7.66931 avg weight= 0.365205 21 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v54G/info/1v54G.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v54G/nostruct-align/1v54G.t2k-thin90.a2m.gz, have 55068 columns in 228 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fk5A/nostruct-align/1fk5A.t2k-thin90.a2m.gz
# 1fk5A.t2k-thin90.a2m with 176 sequences, total weight= 40.8315 avg weight= 0.231997 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fk5A/info/1fk5A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fk5A/nostruct-align/1fk5A.t2k-thin90.a2m.gz, have 55161 columns in 229 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1al3/nostruct-align/1al3.t2k-thin90.a2m.gz
# 1al3.t2k-thin90.a2m with 898 sequences, total weight= 898 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02416 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1al3/info/1al3.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1a/1al3/nostruct-align/1al3.t2k-thin90.a2m.gz, have 55398 columns in 230 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tx4A/nostruct-align/1tx4A.t2k-thin90.a2m.gz
# 1tx4A.t2k-thin90.a2m with 149 sequences, total weight= 149 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22637 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tx4A/info/1tx4A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tx4A/nostruct-align/1tx4A.t2k-thin90.a2m.gz, have 55594 columns in 231 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w2wA/nostruct-align/1w2wA.t2k-thin90.a2m.gz
# 1w2wA.t2k-thin90.a2m with 99 sequences, total weight= 22.7894 avg weight= 0.230196 45 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w2wA/info/1w2wA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1w2wA/nostruct-align/1w2wA.t2k-thin90.a2m.gz, have 55805 columns in 232 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r0mA/nostruct-align/1r0mA.t2k-thin90.a2m.gz
# 1r0mA.t2k-thin90.a2m with 466 sequences, total weight= 466 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17318 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r0mA/info/1r0mA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r0mA/nostruct-align/1r0mA.t2k-thin90.a2m.gz, have 56165 columns in 233 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nthA/nostruct-align/1nthA.t2k-thin90.a2m.gz
# 1nthA.t2k-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.609947 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nthA/info/1nthA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nthA/nostruct-align/1nthA.t2k-thin90.a2m.gz, have 56622 columns in 234 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1c4qA/nostruct-align/1c4qA.t2k-thin90.a2m.gz
# 1c4qA.t2k-thin90.a2m with 6 sequences, total weight= 2.53165 avg weight= 0.421942 10 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1c4qA/info/1c4qA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1c/1c4qA/nostruct-align/1c4qA.t2k-thin90.a2m.gz, have 56691 columns in 235 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jzgA/nostruct-align/1jzgA.t2k-thin90.a2m.gz
# 1jzgA.t2k-thin90.a2m with 28 sequences, total weight= 5.82209 avg weight= 0.207932 22 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jzgA/info/1jzgA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jzgA/nostruct-align/1jzgA.t2k-thin90.a2m.gz, have 56819 columns in 236 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n62A/nostruct-align/1n62A.t2k-thin90.a2m.gz
# 1n62A.t2k-thin90.a2m with 211 sequences, total weight= 19.2776 avg weight= 0.0913632 42 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n62A/info/1n62A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n62A/nostruct-align/1n62A.t2k-thin90.a2m.gz, have 56980 columns in 237 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h0hB/nostruct-align/1h0hB.t2k-thin90.a2m.gz
# 1h0hB.t2k-thin90.a2m with 293 sequences, total weight= 293 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22819 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h0hB/info/1h0hB.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h0hB/nostruct-align/1h0hB.t2k-thin90.a2m.gz, have 57194 columns in 238 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mg4A/nostruct-align/1mg4A.t2k-thin90.a2m.gz
# 1mg4A.t2k-thin90.a2m with 45 sequences, total weight= 37.4109 avg weight= 0.831353 34 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mg4A/info/1mg4A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mg4A/nostruct-align/1mg4A.t2k-thin90.a2m.gz, have 57295 columns in 239 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1omrA/nostruct-align/1omrA.t2k-thin90.a2m.gz
# 1omrA.t2k-thin90.a2m with 842 sequences, total weight= 842 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.082 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1omrA/info/1omrA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1omrA/nostruct-align/1omrA.t2k-thin90.a2m.gz, have 57496 columns in 240 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f60A/nostruct-align/1f60A.t2k-thin90.a2m.gz
# 1f60A.t2k-thin90.a2m with 865 sequences, total weight= 485.886 avg weight= 0.561717 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30923 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f60A/info/1f60A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f60A/nostruct-align/1f60A.t2k-thin90.a2m.gz, have 57936 columns in 241 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gvp/nostruct-align/1gvp.t2k-thin90.a2m.gz
# 1gvp.t2k-thin90.a2m with 8 sequences, total weight= 4.61579 avg weight= 0.576974 16 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gvp/info/1gvp.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gvp/nostruct-align/1gvp.t2k-thin90.a2m.gz, have 58023 columns in 242 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1knmA/nostruct-align/1knmA.t2k-thin90.a2m.gz
# 1knmA.t2k-thin90.a2m with 175 sequences, total weight= 175 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07375 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1knmA/info/1knmA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1knmA/nostruct-align/1knmA.t2k-thin90.a2m.gz, have 58152 columns in 243 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1y6xA/nostruct-align/1y6xA.t2k-thin90.a2m.gz
# 1y6xA.t2k-thin90.a2m with 164 sequences, total weight= 15.0768 avg weight= 0.0919316 40 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1y6xA/info/1y6xA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1y/1y6xA/nostruct-align/1y6xA.t2k-thin90.a2m.gz, have 58239 columns in 244 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1b9wA/nostruct-align/1b9wA.t2k-thin90.a2m.gz
# 1b9wA.t2k-thin90.a2m with 223 sequences, total weight= 107.909 avg weight= 0.483899 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30087 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1b9wA/info/1b9wA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1b/1b9wA/nostruct-align/1b9wA.t2k-thin90.a2m.gz, have 58328 columns in 245 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o9gA/nostruct-align/1o9gA.t2k-thin90.a2m.gz
# 1o9gA.t2k-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.624727 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o9gA/info/1o9gA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o9gA/nostruct-align/1o9gA.t2k-thin90.a2m.gz, have 58577 columns in 246 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fjjA/nostruct-align/1fjjA.t2k-thin90.a2m.gz
# 1fjjA.t2k-thin90.a2m with 126 sequences, total weight= 91.0759 avg weight= 0.722825 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fjjA/info/1fjjA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fjjA/nostruct-align/1fjjA.t2k-thin90.a2m.gz, have 58736 columns in 247 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1ccwB/nostruct-align/1ccwB.t2k-thin90.a2m.gz
# 1ccwB.t2k-thin90.a2m with 7 sequences, total weight= 4.98297 avg weight= 0.711852 15 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1ccwB/info/1ccwB.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1c/1ccwB/nostruct-align/1ccwB.t2k-thin90.a2m.gz, have 59219 columns in 248 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1josA/nostruct-align/1josA.t2k-thin90.a2m.gz
# 1josA.t2k-thin90.a2m with 109 sequences, total weight= 33.5382 avg weight= 0.30769 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1josA/info/1josA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1josA/nostruct-align/1josA.t2k-thin90.a2m.gz, have 59319 columns in 249 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1obdA/nostruct-align/1obdA.t2k-thin90.a2m.gz
# 1obdA.t2k-thin90.a2m with 118 sequences, total weight= 38.0781 avg weight= 0.322696 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1obdA/info/1obdA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1obdA/nostruct-align/1obdA.t2k-thin90.a2m.gz, have 59617 columns in 250 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xmtA/nostruct-align/1xmtA.t2k-thin90.a2m.gz
# 1xmtA.t2k-thin90.a2m with 77 sequences, total weight= 34.7036 avg weight= 0.450696 39 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xmtA/info/1xmtA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1xmtA/nostruct-align/1xmtA.t2k-thin90.a2m.gz, have 59712 columns in 251 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rx0A/nostruct-align/1rx0A.t2k-thin90.a2m.gz
# 1rx0A.t2k-thin90.a2m with 2601 sequences, total weight= 2601 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22367 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rx0A/info/1rx0A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rx0A/nostruct-align/1rx0A.t2k-thin90.a2m.gz, have 60096 columns in 252 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p99A/nostruct-align/1p99A.t2k-thin90.a2m.gz
# 1p99A.t2k-thin90.a2m with 142 sequences, total weight= 24.3631 avg weight= 0.171571 39 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p99A/info/1p99A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1p99A/nostruct-align/1p99A.t2k-thin90.a2m.gz, have 60351 columns in 253 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2l/2lisA/nostruct-align/2lisA.t2k-thin90.a2m.gz
# 2lisA.t2k-thin90.a2m with 26 sequences, total weight= 8.54631 avg weight= 0.328704 22 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2l/2lisA/info/2lisA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/2l/2lisA/nostruct-align/2lisA.t2k-thin90.a2m.gz, have 60482 columns in 254 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vfyA/nostruct-align/1vfyA.t2k-thin90.a2m.gz
# 1vfyA.t2k-thin90.a2m with 140 sequences, total weight= 34.3538 avg weight= 0.245385 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vfyA/info/1vfyA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vfyA/nostruct-align/1vfyA.t2k-thin90.a2m.gz, have 60549 columns in 255 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h72C/nostruct-align/1h72C.t2k-thin90.a2m.gz
# 1h72C.t2k-thin90.a2m with 310 sequences, total weight= 310 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03237 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h72C/info/1h72C.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h72C/nostruct-align/1h72C.t2k-thin90.a2m.gz, have 60845 columns in 256 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1olrA/nostruct-align/1olrA.t2k-thin90.a2m.gz
# 1olrA.t2k-thin90.a2m with 44 sequences, total weight= 19.9691 avg weight= 0.453844 33 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1olrA/info/1olrA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1olrA/nostruct-align/1olrA.t2k-thin90.a2m.gz, have 61069 columns in 257 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nycA/nostruct-align/1nycA.t2k-thin90.a2m.gz
# 1nycA.t2k-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0408 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nycA/info/1nycA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nycA/nostruct-align/1nycA.t2k-thin90.a2m.gz, have 61180 columns in 258 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gs5A/nostruct-align/1gs5A.t2k-thin90.a2m.gz
# 1gs5A.t2k-thin90.a2m with 354 sequences, total weight= 354 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2345 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gs5A/info/1gs5A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gs5A/nostruct-align/1gs5A.t2k-thin90.a2m.gz, have 61438 columns in 259 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h5uA/nostruct-align/1h5uA.t2k-thin90.a2m.gz
# 1h5uA.t2k-thin90.a2m with 149 sequences, total weight= 27.1267 avg weight= 0.182058 44 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h5uA/info/1h5uA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h5uA/nostruct-align/1h5uA.t2k-thin90.a2m.gz, have 62249 columns in 260 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lfwA/nostruct-align/1lfwA.t2k-thin90.a2m.gz
# 1lfwA.t2k-thin90.a2m with 289 sequences, total weight= 289 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04524 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lfwA/info/1lfwA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lfwA/nostruct-align/1lfwA.t2k-thin90.a2m.gz, have 62717 columns in 261 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/7o/7odcA/nostruct-align/7odcA.t2k-thin90.a2m.gz
# 7odcA.t2k-thin90.a2m with 307 sequences, total weight= 307 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28787 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/7o/7odcA/info/7odcA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/7o/7odcA/nostruct-align/7odcA.t2k-thin90.a2m.gz, have 63104 columns in 262 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rm6A/nostruct-align/1rm6A.t2k-thin90.a2m.gz
# 1rm6A.t2k-thin90.a2m with 427 sequences, total weight= 317.515 avg weight= 0.743594 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30287 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rm6A/info/1rm6A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rm6A/nostruct-align/1rm6A.t2k-thin90.a2m.gz, have 63865 columns in 263 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pa7A/nostruct-align/1pa7A.t2k-thin90.a2m.gz
# 1pa7A.t2k-thin90.a2m with 33 sequences, total weight= 10.4566 avg weight= 0.316868 23 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pa7A/info/1pa7A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pa7A/nostruct-align/1pa7A.t2k-thin90.a2m.gz, have 63995 columns in 264 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d8wA/nostruct-align/1d8wA.t2k-thin90.a2m.gz
# 1d8wA.t2k-thin90.a2m with 17 sequences, total weight= 6.22134 avg weight= 0.365961 18 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d8wA/info/1d8wA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1d/1d8wA/nostruct-align/1d8wA.t2k-thin90.a2m.gz, have 64397 columns in 265 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bteA/nostruct-align/1bteA.t2k-thin90.a2m.gz
# 1bteA.t2k-thin90.a2m with 16 sequences, total weight= 8.63899 avg weight= 0.539937 22 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bteA/info/1bteA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1b/1bteA/nostruct-align/1bteA.t2k-thin90.a2m.gz, have 64489 columns in 266 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kt6A/nostruct-align/1kt6A.t2k-thin90.a2m.gz
# 1kt6A.t2k-thin90.a2m with 94 sequences, total weight= 94 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0781 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kt6A/info/1kt6A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kt6A/nostruct-align/1kt6A.t2k-thin90.a2m.gz, have 64664 columns in 267 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mof/nostruct-align/1mof.t2k-thin90.a2m.gz
# 1mof.t2k-thin90.a2m with 21 sequences, total weight= 4.75675 avg weight= 0.226512 20 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mof/info/1mof.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mof/nostruct-align/1mof.t2k-thin90.a2m.gz, have 64717 columns in 268 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vjoA/nostruct-align/1vjoA.t2k-thin90.a2m.gz
# 1vjoA.t2k-thin90.a2m with 1224 sequences, total weight= 1224 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.968046 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vjoA/info/1vjoA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vjoA/nostruct-align/1vjoA.t2k-thin90.a2m.gz, have 65094 columns in 269 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mqvA/nostruct-align/1mqvA.t2k-thin90.a2m.gz
# 1mqvA.t2k-thin90.a2m with 36 sequences, total weight= 26.3079 avg weight= 0.730776 35 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mqvA/info/1mqvA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mqvA/nostruct-align/1mqvA.t2k-thin90.a2m.gz, have 65217 columns in 270 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t0bA/nostruct-align/1t0bA.t2k-thin90.a2m.gz
# 1t0bA.t2k-thin90.a2m with 13 sequences, total weight= 3.16533 avg weight= 0.243487 15 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t0bA/info/1t0bA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t0bA/nostruct-align/1t0bA.t2k-thin90.a2m.gz, have 65457 columns in 271 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r45A/nostruct-align/1r45A.t2k-thin90.a2m.gz
# 1r45A.t2k-thin90.a2m with 30 sequences, total weight= 30 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2329 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r45A/info/1r45A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r45A/nostruct-align/1r45A.t2k-thin90.a2m.gz, have 65658 columns in 272 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3h/3htsB/nostruct-align/3htsB.t2k-thin90.a2m.gz
# 3htsB.t2k-thin90.a2m with 89 sequences, total weight= 17.0419 avg weight= 0.191482 34 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3h/3htsB/info/3htsB.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/3h/3htsB/nostruct-align/3htsB.t2k-thin90.a2m.gz, have 65740 columns in 273 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1c75A/nostruct-align/1c75A.t2k-thin90.a2m.gz
# 1c75A.t2k-thin90.a2m with 237 sequences, total weight= 120.119 avg weight= 0.506833 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30147 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1c75A/info/1c75A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1c/1c75A/nostruct-align/1c75A.t2k-thin90.a2m.gz, have 65811 columns in 274 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1yleA/nostruct-align/1yleA.t2k-thin90.a2m.gz
# 1yleA.t2k-thin90.a2m with 37 sequences, total weight= 8.11805 avg weight= 0.219407 29 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1yleA/info/1yleA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1y/1yleA/nostruct-align/1yleA.t2k-thin90.a2m.gz, have 66141 columns in 275 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vknA/nostruct-align/1vknA.t2k-thin90.a2m.gz
# 1vknA.t2k-thin90.a2m with 300 sequences, total weight= 52.4451 avg weight= 0.174817 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3005 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vknA/info/1vknA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vknA/nostruct-align/1vknA.t2k-thin90.a2m.gz, have 66481 columns in 276 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dg6A/nostruct-align/1dg6A.t2k-thin90.a2m.gz
# 1dg6A.t2k-thin90.a2m with 74 sequences, total weight= 42.307 avg weight= 0.571716 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dg6A/info/1dg6A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dg6A/nostruct-align/1dg6A.t2k-thin90.a2m.gz, have 66630 columns in 277 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a62/nostruct-align/1a62.t2k-thin90.a2m.gz
# 1a62.t2k-thin90.a2m with 74 sequences, total weight= 12.3024 avg weight= 0.166248 32 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1a62/info/1a62.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1a/1a62/nostruct-align/1a62.t2k-thin90.a2m.gz, have 66755 columns in 278 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m55A/nostruct-align/1m55A.t2k-thin90.a2m.gz
# 1m55A.t2k-thin90.a2m with 13 sequences, total weight= 13 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26497 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m55A/info/1m55A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m55A/nostruct-align/1m55A.t2k-thin90.a2m.gz, have 66948 columns in 279 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bgc/nostruct-align/1bgc.t2k-thin90.a2m.gz
# 1bgc.t2k-thin90.a2m with 24 sequences, total weight= 10.4482 avg weight= 0.43534 22 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bgc/info/1bgc.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1b/1bgc/nostruct-align/1bgc.t2k-thin90.a2m.gz, have 67106 columns in 280 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tu7A/nostruct-align/1tu7A.t2k-thin90.a2m.gz
# 1tu7A.t2k-thin90.a2m with 650 sequences, total weight= 650 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21996 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tu7A/info/1tu7A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tu7A/nostruct-align/1tu7A.t2k-thin90.a2m.gz, have 67314 columns in 281 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qxyA/nostruct-align/1qxyA.t2k-thin90.a2m.gz
# 1qxyA.t2k-thin90.a2m with 1254 sequences, total weight= 1254 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2532 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qxyA/info/1qxyA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qxyA/nostruct-align/1qxyA.t2k-thin90.a2m.gz, have 67563 columns in 282 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1shuX/nostruct-align/1shuX.t2k-thin90.a2m.gz
# 1shuX.t2k-thin90.a2m with 433 sequences, total weight= 433 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10198 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1shuX/info/1shuX.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1s/1shuX/nostruct-align/1shuX.t2k-thin90.a2m.gz, have 67744 columns in 283 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f9zA/nostruct-align/1f9zA.t2k-thin90.a2m.gz
# 1f9zA.t2k-thin90.a2m with 293 sequences, total weight= 293 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.971132 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f9zA/info/1f9zA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f9zA/nostruct-align/1f9zA.t2k-thin90.a2m.gz, have 67872 columns in 284 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h8uA/nostruct-align/1h8uA.t2k-thin90.a2m.gz
# 1h8uA.t2k-thin90.a2m with 334 sequences, total weight= 334 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19022 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h8uA/info/1h8uA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h8uA/nostruct-align/1h8uA.t2k-thin90.a2m.gz, have 67987 columns in 285 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uoyA/nostruct-align/1uoyA.t2k-thin90.a2m.gz
# 1uoyA.t2k-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.691603 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uoyA/info/1uoyA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uoyA/nostruct-align/1uoyA.t2k-thin90.a2m.gz, have 68051 columns in 286 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j54A/nostruct-align/1j54A.t2k-thin90.a2m.gz
# 1j54A.t2k-thin90.a2m with 294 sequences, total weight= 294 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26435 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j54A/info/1j54A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j54A/nostruct-align/1j54A.t2k-thin90.a2m.gz, have 68225 columns in 287 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rkiA/nostruct-align/1rkiA.t2k-thin90.a2m.gz
# 1rkiA.t2k-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.625635 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rkiA/info/1rkiA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rkiA/nostruct-align/1rkiA.t2k-thin90.a2m.gz, have 68326 columns in 288 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1ji7A/nostruct-align/1ji7A.t2k-thin90.a2m.gz
# 1ji7A.t2k-thin90.a2m with 36 sequences, total weight= 20.0438 avg weight= 0.556772 33 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1ji7A/info/1ji7A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1ji7A/nostruct-align/1ji7A.t2k-thin90.a2m.gz, have 68403 columns in 289 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wd3A/nostruct-align/1wd3A.t2k-thin90.a2m.gz
# 1wd3A.t2k-thin90.a2m with 19 sequences, total weight= 6.23245 avg weight= 0.328024 16 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wd3A/info/1wd3A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1wd3A/nostruct-align/1wd3A.t2k-thin90.a2m.gz, have 68885 columns in 290 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q74A/nostruct-align/1q74A.t2k-thin90.a2m.gz
# 1q74A.t2k-thin90.a2m with 122 sequences, total weight= 122 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.06914 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q74A/info/1q74A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q74A/nostruct-align/1q74A.t2k-thin90.a2m.gz, have 69172 columns in 291 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r7aA/nostruct-align/1r7aA.t2k-thin90.a2m.gz
# 1r7aA.t2k-thin90.a2m with 299 sequences, total weight= 299 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24673 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r7aA/info/1r7aA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r7aA/nostruct-align/1r7aA.t2k-thin90.a2m.gz, have 69676 columns in 292 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wd7A/nostruct-align/1wd7A.t2k-thin90.a2m.gz
# 1wd7A.t2k-thin90.a2m with 78 sequences, total weight= 78 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22344 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wd7A/info/1wd7A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1wd7A/nostruct-align/1wd7A.t2k-thin90.a2m.gz, have 69930 columns in 293 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sc3A/nostruct-align/1sc3A.t2k-thin90.a2m.gz
# 1sc3A.t2k-thin90.a2m with 154 sequences, total weight= 90.3442 avg weight= 0.586651 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sc3A/info/1sc3A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sc3A/nostruct-align/1sc3A.t2k-thin90.a2m.gz, have 70103 columns in 294 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jyhA/nostruct-align/1jyhA.t2k-thin90.a2m.gz
# 1jyhA.t2k-thin90.a2m with 44 sequences, total weight= 44 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23651 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jyhA/info/1jyhA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jyhA/nostruct-align/1jyhA.t2k-thin90.a2m.gz, have 70258 columns in 295 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m9zA/nostruct-align/1m9zA.t2k-thin90.a2m.gz
# 1m9zA.t2k-thin90.a2m with 8 sequences, total weight= 3.24478 avg weight= 0.405598 14 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m9zA/info/1m9zA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m9zA/nostruct-align/1m9zA.t2k-thin90.a2m.gz, have 70363 columns in 296 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v54A/nostruct-align/1v54A.t2k-thin90.a2m.gz
# 1v54A.t2k-thin90.a2m with 1988 sequences, total weight= 62.2894 avg weight= 0.0313327 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v54A/info/1v54A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v54A/nostruct-align/1v54A.t2k-thin90.a2m.gz, have 70877 columns in 297 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wddS/nostruct-align/1wddS.t2k-thin90.a2m.gz
# 1wddS.t2k-thin90.a2m with 182 sequences, total weight= 12.9073 avg weight= 0.0709194 31 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wddS/info/1wddS.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1wddS/nostruct-align/1wddS.t2k-thin90.a2m.gz, have 70999 columns in 298 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1udzA/nostruct-align/1udzA.t2k-thin90.a2m.gz
# 1udzA.t2k-thin90.a2m with 1042 sequences, total weight= 113.417 avg weight= 0.108846 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30724 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1udzA/info/1udzA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1udzA/nostruct-align/1udzA.t2k-thin90.a2m.gz, have 71178 columns in 299 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1luzA/nostruct-align/1luzA.t2k-thin90.a2m.gz
# 1luzA.t2k-thin90.a2m with 148 sequences, total weight= 43.7609 avg weight= 0.295682 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1luzA/info/1luzA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1l/1luzA/nostruct-align/1luzA.t2k-thin90.a2m.gz, have 71263 columns in 300 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dc1A/nostruct-align/1dc1A.t2k-thin90.a2m.gz
# 1dc1A.t2k-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14377 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dc1A/info/1dc1A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dc1A/nostruct-align/1dc1A.t2k-thin90.a2m.gz, have 71573 columns in 301 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rdqE/nostruct-align/1rdqE.t2k-thin90.a2m.gz
# 1rdqE.t2k-thin90.a2m with 6417 sequences, total weight= 6417 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15093 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rdqE/info/1rdqE.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rdqE/nostruct-align/1rdqE.t2k-thin90.a2m.gz, have 71915 columns in 302 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1ye8A/nostruct-align/1ye8A.t2k-thin90.a2m.gz
# 1ye8A.t2k-thin90.a2m with 129 sequences, total weight= 125.004 avg weight= 0.969025 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1ye8A/info/1ye8A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1y/1ye8A/nostruct-align/1ye8A.t2k-thin90.a2m.gz, have 72087 columns in 303 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rliA/nostruct-align/1rliA.t2k-thin90.a2m.gz
# 1rliA.t2k-thin90.a2m with 251 sequences, total weight= 251 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08779 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rliA/info/1rliA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rliA/nostruct-align/1rliA.t2k-thin90.a2m.gz, have 72243 columns in 304 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dosA/nostruct-align/1dosA.t2k-thin90.a2m.gz
# 1dosA.t2k-thin90.a2m with 167 sequences, total weight= 22.7326 avg weight= 0.136124 40 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dosA/info/1dosA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dosA/nostruct-align/1dosA.t2k-thin90.a2m.gz, have 72601 columns in 305 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fm0E/nostruct-align/1fm0E.t2k-thin90.a2m.gz
# 1fm0E.t2k-thin90.a2m with 104 sequences, total weight= 26.5633 avg weight= 0.255416 45 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fm0E/info/1fm0E.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fm0E/nostruct-align/1fm0E.t2k-thin90.a2m.gz, have 72743 columns in 306 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iqzA/nostruct-align/1iqzA.t2k-thin90.a2m.gz
# 1iqzA.t2k-thin90.a2m with 302 sequences, total weight= 302 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23228 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iqzA/info/1iqzA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1iqzA/nostruct-align/1iqzA.t2k-thin90.a2m.gz, have 72824 columns in 307 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d7pM/nostruct-align/1d7pM.t2k-thin90.a2m.gz
# 1d7pM.t2k-thin90.a2m with 111 sequences, total weight= 46.9024 avg weight= 0.422544 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d7pM/info/1d7pM.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1d/1d7pM/nostruct-align/1d7pM.t2k-thin90.a2m.gz, have 72983 columns in 308 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qwoA/nostruct-align/1qwoA.t2k-thin90.a2m.gz
# 1qwoA.t2k-thin90.a2m with 71 sequences, total weight= 71 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25265 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qwoA/info/1qwoA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qwoA/nostruct-align/1qwoA.t2k-thin90.a2m.gz, have 73418 columns in 309 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lst/nostruct-align/1lst.t2k-thin90.a2m.gz
# 1lst.t2k-thin90.a2m with 259 sequences, total weight= 259 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19975 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lst/info/1lst.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lst/nostruct-align/1lst.t2k-thin90.a2m.gz, have 73656 columns in 310 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hdkA/nostruct-align/1hdkA.t2k-thin90.a2m.gz
# 1hdkA.t2k-thin90.a2m with 159 sequences, total weight= 99.2369 avg weight= 0.624132 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3004 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hdkA/info/1hdkA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hdkA/nostruct-align/1hdkA.t2k-thin90.a2m.gz, have 73795 columns in 311 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k1eA/nostruct-align/1k1eA.t2k-thin90.a2m.gz
# 1k1eA.t2k-thin90.a2m with 292 sequences, total weight= 151.212 avg weight= 0.51785 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30091 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k1eA/info/1k1eA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k1eA/nostruct-align/1k1eA.t2k-thin90.a2m.gz, have 73972 columns in 312 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2h/2hft/nostruct-align/2hft.t2k-thin90.a2m.gz
# 2hft.t2k-thin90.a2m with 49 sequences, total weight= 49 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1794 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2h/2hft/info/2hft.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/2h/2hft/nostruct-align/2hft.t2k-thin90.a2m.gz, have 74177 columns in 313 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bkf/nostruct-align/1bkf.t2k-thin90.a2m.gz
# 1bkf.t2k-thin90.a2m with 244 sequences, total weight= 59.2323 avg weight= 0.242755 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30045 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bkf/info/1bkf.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1b/1bkf/nostruct-align/1bkf.t2k-thin90.a2m.gz, have 74284 columns in 314 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m22A/nostruct-align/1m22A.t2k-thin90.a2m.gz
# 1m22A.t2k-thin90.a2m with 342 sequences, total weight= 342 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28892 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m22A/info/1m22A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m22A/nostruct-align/1m22A.t2k-thin90.a2m.gz, have 74771 columns in 315 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ew6A/nostruct-align/1ew6A.t2k-thin90.a2m.gz
# 1ew6A.t2k-thin90.a2m with 123 sequences, total weight= 91.7864 avg weight= 0.746231 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30041 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ew6A/info/1ew6A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1ew6A/nostruct-align/1ew6A.t2k-thin90.a2m.gz, have 74908 columns in 316 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2n/2nacA/nostruct-align/2nacA.t2k-thin90.a2m.gz
# 2nacA.t2k-thin90.a2m with 269 sequences, total weight= 155.477 avg weight= 0.577982 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30059 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2n/2nacA/info/2nacA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/2n/2nacA/nostruct-align/2nacA.t2k-thin90.a2m.gz, have 75282 columns in 317 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h97A/nostruct-align/1h97A.t2k-thin90.a2m.gz
# 1h97A.t2k-thin90.a2m with 164 sequences, total weight= 164 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2825 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h97A/info/1h97A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h97A/nostruct-align/1h97A.t2k-thin90.a2m.gz, have 75429 columns in 318 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vd5A/nostruct-align/1vd5A.t2k-thin90.a2m.gz
# 1vd5A.t2k-thin90.a2m with 30 sequences, total weight= 17.5825 avg weight= 0.586084 31 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vd5A/info/1vd5A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vd5A/nostruct-align/1vd5A.t2k-thin90.a2m.gz, have 75806 columns in 319 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dp7P/nostruct-align/1dp7P.t2k-thin90.a2m.gz
# 1dp7P.t2k-thin90.a2m with 19 sequences, total weight= 6.66966 avg weight= 0.351035 23 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dp7P/info/1dp7P.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dp7P/nostruct-align/1dp7P.t2k-thin90.a2m.gz, have 75882 columns in 320 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sj1A/nostruct-align/1sj1A.t2k-thin90.a2m.gz
# 1sj1A.t2k-thin90.a2m with 669 sequences, total weight= 272.97 avg weight= 0.408026 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30899 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sj1A/info/1sj1A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sj1A/nostruct-align/1sj1A.t2k-thin90.a2m.gz, have 75948 columns in 321 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rz2A/nostruct-align/1rz2A.t2k-thin90.a2m.gz
# 1rz2A.t2k-thin90.a2m with 23 sequences, total weight= 23 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26257 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rz2A/info/1rz2A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rz2A/nostruct-align/1rz2A.t2k-thin90.a2m.gz, have 76162 columns in 322 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tkeA/nostruct-align/1tkeA.t2k-thin90.a2m.gz
# 1tkeA.t2k-thin90.a2m with 352 sequences, total weight= 79.8846 avg weight= 0.226945 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30113 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tkeA/info/1tkeA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tkeA/nostruct-align/1tkeA.t2k-thin90.a2m.gz, have 76386 columns in 323 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rhs/nostruct-align/1rhs.t2k-thin90.a2m.gz
# 1rhs.t2k-thin90.a2m with 173 sequences, total weight= 173 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25426 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rhs/info/1rhs.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rhs/nostruct-align/1rhs.t2k-thin90.a2m.gz, have 76679 columns in 324 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iooA/nostruct-align/1iooA.t2k-thin90.a2m.gz
# 1iooA.t2k-thin90.a2m with 226 sequences, total weight= 60.2779 avg weight= 0.266717 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30044 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iooA/info/1iooA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1iooA/nostruct-align/1iooA.t2k-thin90.a2m.gz, have 76875 columns in 325 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k3xA/nostruct-align/1k3xA.t2k-thin90.a2m.gz
# 1k3xA.t2k-thin90.a2m with 137 sequences, total weight= 54.5522 avg weight= 0.398192 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k3xA/info/1k3xA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k3xA/nostruct-align/1k3xA.t2k-thin90.a2m.gz, have 77128 columns in 326 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rjoA/nostruct-align/1rjoA.t2k-thin90.a2m.gz
# 1rjoA.t2k-thin90.a2m with 106 sequences, total weight= 46.2675 avg weight= 0.436486 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rjoA/info/1rjoA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rjoA/nostruct-align/1rjoA.t2k-thin90.a2m.gz, have 77748 columns in 327 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h75A/nostruct-align/1h75A.t2k-thin90.a2m.gz
# 1h75A.t2k-thin90.a2m with 190 sequences, total weight= 102.105 avg weight= 0.537396 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30032 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h75A/info/1h75A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h75A/nostruct-align/1h75A.t2k-thin90.a2m.gz, have 77824 columns in 328 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oqvA/nostruct-align/1oqvA.t2k-thin90.a2m.gz
# 1oqvA.t2k-thin90.a2m with 13 sequences, total weight= 3.82273 avg weight= 0.294056 15 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oqvA/info/1oqvA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oqvA/nostruct-align/1oqvA.t2k-thin90.a2m.gz, have 77995 columns in 329 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w53A/nostruct-align/1w53A.t2k-thin90.a2m.gz
# 1w53A.t2k-thin90.a2m with 8 sequences, total weight= 5.78613 avg weight= 0.723266 17 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w53A/info/1w53A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1w53A/nostruct-align/1w53A.t2k-thin90.a2m.gz, have 78079 columns in 330 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n08A/nostruct-align/1n08A.t2k-thin90.a2m.gz
# 1n08A.t2k-thin90.a2m with 105 sequences, total weight= 24.6077 avg weight= 0.234359 43 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n08A/info/1n08A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n08A/nostruct-align/1n08A.t2k-thin90.a2m.gz, have 78233 columns in 331 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uzbA/nostruct-align/1uzbA.t2k-thin90.a2m.gz
# 1uzbA.t2k-thin90.a2m with 3087 sequences, total weight= 746.337 avg weight= 0.241768 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.32387 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uzbA/info/1uzbA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uzbA/nostruct-align/1uzbA.t2k-thin90.a2m.gz, have 78749 columns in 332 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1isuA/nostruct-align/1isuA.t2k-thin90.a2m.gz
# 1isuA.t2k-thin90.a2m with 21 sequences, total weight= 10.7372 avg weight= 0.511297 22 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1isuA/info/1isuA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1isuA/nostruct-align/1isuA.t2k-thin90.a2m.gz, have 78811 columns in 333 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1yc9A/nostruct-align/1yc9A.t2k-thin90.a2m.gz
# 1yc9A.t2k-thin90.a2m with 790 sequences, total weight= 790 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07851 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1yc9A/info/1yc9A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1y/1yc9A/nostruct-align/1yc9A.t2k-thin90.a2m.gz, have 79222 columns in 334 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cl8A/nostruct-align/1cl8A.t2k-thin90.a2m.gz
# 1cl8A.t2k-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05782 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cl8A/info/1cl8A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cl8A/nostruct-align/1cl8A.t2k-thin90.a2m.gz, have 79483 columns in 335 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qtwA/nostruct-align/1qtwA.t2k-thin90.a2m.gz
# 1qtwA.t2k-thin90.a2m with 89 sequences, total weight= 63.2785 avg weight= 0.710994 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qtwA/info/1qtwA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qtwA/nostruct-align/1qtwA.t2k-thin90.a2m.gz, have 79768 columns in 336 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uwcA/nostruct-align/1uwcA.t2k-thin90.a2m.gz
# 1uwcA.t2k-thin90.a2m with 198 sequences, total weight= 198 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03367 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uwcA/info/1uwcA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uwcA/nostruct-align/1uwcA.t2k-thin90.a2m.gz, have 80029 columns in 337 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o7jA/nostruct-align/1o7jA.t2k-thin90.a2m.gz
# 1o7jA.t2k-thin90.a2m with 125 sequences, total weight= 55.477 avg weight= 0.443816 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30034 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o7jA/info/1o7jA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o7jA/nostruct-align/1o7jA.t2k-thin90.a2m.gz, have 80354 columns in 338 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uvqA/nostruct-align/1uvqA.t2k-thin90.a2m.gz
# 1uvqA.t2k-thin90.a2m with 1912 sequences, total weight= 1912 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22925 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uvqA/info/1uvqA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uvqA/nostruct-align/1uvqA.t2k-thin90.a2m.gz, have 80536 columns in 339 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lo7A/nostruct-align/1lo7A.t2k-thin90.a2m.gz
# 1lo7A.t2k-thin90.a2m with 121 sequences, total weight= 121 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25115 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lo7A/info/1lo7A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lo7A/nostruct-align/1lo7A.t2k-thin90.a2m.gz, have 80676 columns in 340 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xtyA/nostruct-align/1xtyA.t2k-thin90.a2m.gz
# 1xtyA.t2k-thin90.a2m with 90 sequences, total weight= 16.4044 avg weight= 0.182271 34 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xtyA/info/1xtyA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1xtyA/nostruct-align/1xtyA.t2k-thin90.a2m.gz, have 80796 columns in 341 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sg4A/nostruct-align/1sg4A.t2k-thin90.a2m.gz
# 1sg4A.t2k-thin90.a2m with 1429 sequences, total weight= 1122.31 avg weight= 0.785381 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30616 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sg4A/info/1sg4A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sg4A/nostruct-align/1sg4A.t2k-thin90.a2m.gz, have 81045 columns in 342 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1juvA/nostruct-align/1juvA.t2k-thin90.a2m.gz
# 1juvA.t2k-thin90.a2m with 169 sequences, total weight= 83.9709 avg weight= 0.496869 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1juvA/info/1juvA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1juvA/nostruct-align/1juvA.t2k-thin90.a2m.gz, have 81238 columns in 343 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d1qA/nostruct-align/1d1qA.t2k-thin90.a2m.gz
# 1d1qA.t2k-thin90.a2m with 170 sequences, total weight= 65.9094 avg weight= 0.387702 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30036 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d1qA/info/1d1qA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1d/1d1qA/nostruct-align/1d1qA.t2k-thin90.a2m.gz, have 81397 columns in 344 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e0cA/nostruct-align/1e0cA.t2k-thin90.a2m.gz
# 1e0cA.t2k-thin90.a2m with 295 sequences, total weight= 295 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25252 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e0cA/info/1e0cA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e0cA/nostruct-align/1e0cA.t2k-thin90.a2m.gz, have 81668 columns in 345 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qtnB/nostruct-align/1qtnB.t2k-thin90.a2m.gz
# 1qtnB.t2k-thin90.a2m with 71 sequences, total weight= 22.6796 avg weight= 0.319432 39 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qtnB/info/1qtnB.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qtnB/nostruct-align/1qtnB.t2k-thin90.a2m.gz, have 81758 columns in 346 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n3lA/nostruct-align/1n3lA.t2k-thin90.a2m.gz
# 1n3lA.t2k-thin90.a2m with 197 sequences, total weight= 171.081 avg weight= 0.868429 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30038 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n3lA/info/1n3lA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n3lA/nostruct-align/1n3lA.t2k-thin90.a2m.gz, have 82090 columns in 347 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1us0A/nostruct-align/1us0A.t2k-thin90.a2m.gz
# 1us0A.t2k-thin90.a2m with 988 sequences, total weight= 383.779 avg weight= 0.38844 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31352 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1us0A/info/1us0A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1us0A/nostruct-align/1us0A.t2k-thin90.a2m.gz, have 82403 columns in 348 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i0dA/nostruct-align/1i0dA.t2k-thin90.a2m.gz
# 1i0dA.t2k-thin90.a2m with 30 sequences, total weight= 19.4033 avg weight= 0.646775 30 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i0dA/info/1i0dA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i0dA/nostruct-align/1i0dA.t2k-thin90.a2m.gz, have 82734 columns in 349 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q7eA/nostruct-align/1q7eA.t2k-thin90.a2m.gz
# 1q7eA.t2k-thin90.a2m with 342 sequences, total weight= 99.7995 avg weight= 0.291811 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30078 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q7eA/info/1q7eA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q7eA/nostruct-align/1q7eA.t2k-thin90.a2m.gz, have 83144 columns in 350 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1txgA/nostruct-align/1txgA.t2k-thin90.a2m.gz
# 1txgA.t2k-thin90.a2m with 299 sequences, total weight= 85.3912 avg weight= 0.285589 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30097 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1txgA/info/1txgA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1txgA/nostruct-align/1txgA.t2k-thin90.a2m.gz, have 83479 columns in 351 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xkiA/nostruct-align/1xkiA.t2k-thin90.a2m.gz
# 1xkiA.t2k-thin90.a2m with 125 sequences, total weight= 125 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22882 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xkiA/info/1xkiA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1xkiA/nostruct-align/1xkiA.t2k-thin90.a2m.gz, have 83607 columns in 352 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nwaA/nostruct-align/1nwaA.t2k-thin90.a2m.gz
# 1nwaA.t2k-thin90.a2m with 191 sequences, total weight= 16.6651 avg weight= 0.087252 40 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nwaA/info/1nwaA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nwaA/nostruct-align/1nwaA.t2k-thin90.a2m.gz, have 83775 columns in 353 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wp5A/nostruct-align/1wp5A.t2k-thin90.a2m.gz
# 1wp5A.t2k-thin90.a2m with 274 sequences, total weight= 101.849 avg weight= 0.37171 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30103 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wp5A/info/1wp5A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1wp5A/nostruct-align/1wp5A.t2k-thin90.a2m.gz, have 84098 columns in 354 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r5lA/nostruct-align/1r5lA.t2k-thin90.a2m.gz
# 1r5lA.t2k-thin90.a2m with 179 sequences, total weight= 179 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08834 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r5lA/info/1r5lA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r5lA/nostruct-align/1r5lA.t2k-thin90.a2m.gz, have 84349 columns in 355 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rc9A/nostruct-align/1rc9A.t2k-thin90.a2m.gz
# 1rc9A.t2k-thin90.a2m with 430 sequences, total weight= 430 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27237 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rc9A/info/1rc9A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rc9A/nostruct-align/1rc9A.t2k-thin90.a2m.gz, have 84570 columns in 356 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v54E/nostruct-align/1v54E.t2k-thin90.a2m.gz
# 1v54E.t2k-thin90.a2m with 12 sequences, total weight= 4.33095 avg weight= 0.360913 16 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v54E/info/1v54E.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v54E/nostruct-align/1v54E.t2k-thin90.a2m.gz, have 84675 columns in 357 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1odzA/nostruct-align/1odzA.t2k-thin90.a2m.gz
# 1odzA.t2k-thin90.a2m with 31 sequences, total weight= 31 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20806 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1odzA/info/1odzA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1odzA/nostruct-align/1odzA.t2k-thin90.a2m.gz, have 85054 columns in 358 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kw3B/nostruct-align/1kw3B.t2k-thin90.a2m.gz
# 1kw3B.t2k-thin90.a2m with 125 sequences, total weight= 125 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25067 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kw3B/info/1kw3B.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kw3B/nostruct-align/1kw3B.t2k-thin90.a2m.gz, have 85342 columns in 359 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ug6A/nostruct-align/1ug6A.t2k-thin90.a2m.gz
# 1ug6A.t2k-thin90.a2m with 343 sequences, total weight= 48.052 avg weight= 0.140093 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30041 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ug6A/info/1ug6A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1ug6A/nostruct-align/1ug6A.t2k-thin90.a2m.gz, have 85768 columns in 360 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oi2A/nostruct-align/1oi2A.t2k-thin90.a2m.gz
# 1oi2A.t2k-thin90.a2m with 75 sequences, total weight= 11.1764 avg weight= 0.149019 33 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oi2A/info/1oi2A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oi2A/nostruct-align/1oi2A.t2k-thin90.a2m.gz, have 86104 columns in 361 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p5vA/nostruct-align/1p5vA.t2k-thin90.a2m.gz
# 1p5vA.t2k-thin90.a2m with 123 sequences, total weight= 30.9041 avg weight= 0.251253 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p5vA/info/1p5vA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1p5vA/nostruct-align/1p5vA.t2k-thin90.a2m.gz, have 86295 columns in 362 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gudA/nostruct-align/1gudA.t2k-thin90.a2m.gz
# 1gudA.t2k-thin90.a2m with 587 sequences, total weight= 587 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.996157 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gudA/info/1gudA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gudA/nostruct-align/1gudA.t2k-thin90.a2m.gz, have 86583 columns in 363 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cmcA/nostruct-align/1cmcA.t2k-thin90.a2m.gz
# 1cmcA.t2k-thin90.a2m with 8 sequences, total weight= 2.19252 avg weight= 0.274065 10 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cmcA/info/1cmcA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cmcA/nostruct-align/1cmcA.t2k-thin90.a2m.gz, have 86687 columns in 364 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k7iA/nostruct-align/1k7iA.t2k-thin90.a2m.gz
# 1k7iA.t2k-thin90.a2m with 509 sequences, total weight= 509 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15709 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k7iA/info/1k7iA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k7iA/nostruct-align/1k7iA.t2k-thin90.a2m.gz, have 87149 columns in 365 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a8o/nostruct-align/1a8o.t2k-thin90.a2m.gz
# 1a8o.t2k-thin90.a2m with 103 sequences, total weight= 14.6711 avg weight= 0.142438 36 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1a8o/info/1a8o.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1a/1a8o/nostruct-align/1a8o.t2k-thin90.a2m.gz, have 87219 columns in 366 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o54A/nostruct-align/1o54A.t2k-thin90.a2m.gz
# 1o54A.t2k-thin90.a2m with 874 sequences, total weight= 874 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.896727 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o54A/info/1o54A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o54A/nostruct-align/1o54A.t2k-thin90.a2m.gz, have 87484 columns in 367 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gxmA/nostruct-align/1gxmA.t2k-thin90.a2m.gz
# 1gxmA.t2k-thin90.a2m with 21 sequences, total weight= 14.7586 avg weight= 0.70279 22 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gxmA/info/1gxmA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gxmA/nostruct-align/1gxmA.t2k-thin90.a2m.gz, have 87808 columns in 368 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2f/2fdn/nostruct-align/2fdn.t2k-thin90.a2m.gz
# 2fdn.t2k-thin90.a2m with 972 sequences, total weight= 86.5781 avg weight= 0.0890721 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30217 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2f/2fdn/info/2fdn.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/2f/2fdn/nostruct-align/2fdn.t2k-thin90.a2m.gz, have 87863 columns in 369 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g55A/nostruct-align/1g55A.t2k-thin90.a2m.gz
# 1g55A.t2k-thin90.a2m with 261 sequences, total weight= 261 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11913 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g55A/info/1g55A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1g55A/nostruct-align/1g55A.t2k-thin90.a2m.gz, have 88176 columns in 370 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l6xA/nostruct-align/1l6xA.t2k-thin90.a2m.gz
# 1l6xA.t2k-thin90.a2m with 2056 sequences, total weight= 2056 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02312 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l6xA/info/1l6xA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1l/1l6xA/nostruct-align/1l6xA.t2k-thin90.a2m.gz, have 88383 columns in 371 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1smbA/nostruct-align/1smbA.t2k-thin90.a2m.gz
# 1smbA.t2k-thin90.a2m with 362 sequences, total weight= 143.667 avg weight= 0.396869 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30364 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1smbA/info/1smbA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1s/1smbA/nostruct-align/1smbA.t2k-thin90.a2m.gz, have 88532 columns in 372 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qjpA/nostruct-align/1qjpA.t2k-thin90.a2m.gz
# 1qjpA.t2k-thin90.a2m with 141 sequences, total weight= 141 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27572 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qjpA/info/1qjpA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qjpA/nostruct-align/1qjpA.t2k-thin90.a2m.gz, have 88669 columns in 373 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wddA/nostruct-align/1wddA.t2k-thin90.a2m.gz
# 1wddA.t2k-thin90.a2m with 773 sequences, total weight= 16.4896 avg weight= 0.021332 31 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wddA/info/1wddA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1wddA/nostruct-align/1wddA.t2k-thin90.a2m.gz, have 89134 columns in 374 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ufyA/nostruct-align/1ufyA.t2k-thin90.a2m.gz
# 1ufyA.t2k-thin90.a2m with 23 sequences, total weight= 6.43886 avg weight= 0.279951 24 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ufyA/info/1ufyA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1ufyA/nostruct-align/1ufyA.t2k-thin90.a2m.gz, have 89255 columns in 375 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ouwA/nostruct-align/1ouwA.t2k-thin90.a2m.gz
# 1ouwA.t2k-thin90.a2m with 174 sequences, total weight= 64.9495 avg weight= 0.373273 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ouwA/info/1ouwA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1ouwA/nostruct-align/1ouwA.t2k-thin90.a2m.gz, have 89404 columns in 376 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oksA/nostruct-align/1oksA.t2k-thin90.a2m.gz
# 1oksA.t2k-thin90.a2m with 5 sequences, total weight= 3.56796 avg weight= 0.713591 11 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oksA/info/1oksA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oksA/nostruct-align/1oksA.t2k-thin90.a2m.gz, have 89457 columns in 377 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mk0A/nostruct-align/1mk0A.t2k-thin90.a2m.gz
# 1mk0A.t2k-thin90.a2m with 99 sequences, total weight= 85.1132 avg weight= 0.85973 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mk0A/info/1mk0A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mk0A/nostruct-align/1mk0A.t2k-thin90.a2m.gz, have 89554 columns in 378 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nnfA/nostruct-align/1nnfA.t2k-thin90.a2m.gz
# 1nnfA.t2k-thin90.a2m with 270 sequences, total weight= 270 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.948348 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nnfA/info/1nnfA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nnfA/nostruct-align/1nnfA.t2k-thin90.a2m.gz, have 89862 columns in 379 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ummA/nostruct-align/1ummA.t2k-thin90.a2m.gz
# 1ummA.t2k-thin90.a2m with 260 sequences, total weight= 260 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25455 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ummA/info/1ummA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1ummA/nostruct-align/1ummA.t2k-thin90.a2m.gz, have 90011 columns in 380 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2a/2arcA/nostruct-align/2arcA.t2k-thin90.a2m.gz
# 2arcA.t2k-thin90.a2m with 21 sequences, total weight= 21 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27763 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2a/2arcA/info/2arcA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/2a/2arcA/nostruct-align/2arcA.t2k-thin90.a2m.gz, have 90172 columns in 381 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v05A/nostruct-align/1v05A.t2k-thin90.a2m.gz
# 1v05A.t2k-thin90.a2m with 272 sequences, total weight= 75.1322 avg weight= 0.276221 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30044 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v05A/info/1v05A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v05A/nostruct-align/1v05A.t2k-thin90.a2m.gz, have 90268 columns in 382 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1u0fA/nostruct-align/1u0fA.t2k-thin90.a2m.gz
# 1u0fA.t2k-thin90.a2m with 291 sequences, total weight= 41.282 avg weight= 0.141863 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1u0fA/info/1u0fA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1u0fA/nostruct-align/1u0fA.t2k-thin90.a2m.gz, have 90824 columns in 383 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nfp/nostruct-align/1nfp.t2k-thin90.a2m.gz
# 1nfp.t2k-thin90.a2m with 26 sequences, total weight= 23.2949 avg weight= 0.895956 24 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nfp/info/1nfp.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nfp/nostruct-align/1nfp.t2k-thin90.a2m.gz, have 91052 columns in 384 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gppA/nostruct-align/1gppA.t2k-thin90.a2m.gz
# 1gppA.t2k-thin90.a2m with 23 sequences, total weight= 15.0935 avg weight= 0.656238 24 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gppA/info/1gppA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gppA/nostruct-align/1gppA.t2k-thin90.a2m.gz, have 91269 columns in 385 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i88A/nostruct-align/1i88A.t2k-thin90.a2m.gz
# 1i88A.t2k-thin90.a2m with 204 sequences, total weight= 107.491 avg weight= 0.526916 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30088 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i88A/info/1i88A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i88A/nostruct-align/1i88A.t2k-thin90.a2m.gz, have 91658 columns in 386 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3c/3cla/nostruct-align/3cla.t2k-thin90.a2m.gz
# 3cla.t2k-thin90.a2m with 30 sequences, total weight= 16.6191 avg weight= 0.553971 30 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3c/3cla/info/3cla.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/3c/3cla/nostruct-align/3cla.t2k-thin90.a2m.gz, have 91871 columns in 387 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iyhA/nostruct-align/1iyhA.t2k-thin90.a2m.gz
# 1iyhA.t2k-thin90.a2m with 428 sequences, total weight= 428 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14088 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iyhA/info/1iyhA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1iyhA/nostruct-align/1iyhA.t2k-thin90.a2m.gz, have 92069 columns in 388 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qgeE/nostruct-align/1qgeE.t2k-thin90.a2m.gz
# 1qgeE.t2k-thin90.a2m with 26 sequences, total weight= 8.53559 avg weight= 0.328292 22 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qgeE/info/1qgeE.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qgeE/nostruct-align/1qgeE.t2k-thin90.a2m.gz, have 92166 columns in 389 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eca/nostruct-align/1eca.t2k-thin90.a2m.gz
# 1eca.t2k-thin90.a2m with 187 sequences, total weight= 80.9916 avg weight= 0.43311 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30155 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eca/info/1eca.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1eca/nostruct-align/1eca.t2k-thin90.a2m.gz, have 92302 columns in 390 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p1mA/nostruct-align/1p1mA.t2k-thin90.a2m.gz
# 1p1mA.t2k-thin90.a2m with 360 sequences, total weight= 360 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.94604 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p1mA/info/1p1mA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1p1mA/nostruct-align/1p1mA.t2k-thin90.a2m.gz, have 92706 columns in 391 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v54F/nostruct-align/1v54F.t2k-thin90.a2m.gz
# 1v54F.t2k-thin90.a2m with 19 sequences, total weight= 9.67921 avg weight= 0.509432 21 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v54F/info/1v54F.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v54F/nostruct-align/1v54F.t2k-thin90.a2m.gz, have 92804 columns in 392 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kqwA/nostruct-align/1kqwA.t2k-thin90.a2m.gz
# 1kqwA.t2k-thin90.a2m with 128 sequences, total weight= 31.0218 avg weight= 0.242358 40 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kqwA/info/1kqwA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kqwA/nostruct-align/1kqwA.t2k-thin90.a2m.gz, have 92938 columns in 393 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v5iB/nostruct-align/1v5iB.t2k-thin90.a2m.gz
# 1v5iB.t2k-thin90.a2m with 33 sequences, total weight= 21.0296 avg weight= 0.637261 30 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v5iB/info/1v5iB.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v5iB/nostruct-align/1v5iB.t2k-thin90.a2m.gz, have 93014 columns in 394 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1erw/nostruct-align/1erw.t2k-thin90.a2m.gz
# 1erw.t2k-thin90.a2m with 398 sequences, total weight= 321.879 avg weight= 0.808742 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30262 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1erw/info/1erw.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1erw/nostruct-align/1erw.t2k-thin90.a2m.gz, have 93119 columns in 395 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1in6A/nostruct-align/1in6A.t2k-thin90.a2m.gz
# 1in6A.t2k-thin90.a2m with 1586 sequences, total weight= 1586 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04313 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1in6A/info/1in6A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1in6A/nostruct-align/1in6A.t2k-thin90.a2m.gz, have 93419 columns in 396 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p57A/nostruct-align/1p57A.t2k-thin90.a2m.gz
# 1p57A.t2k-thin90.a2m with 2 sequences, total weight= 1.80962 avg weight= 0.904812 7 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p57A/info/1p57A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1p57A/nostruct-align/1p57A.t2k-thin90.a2m.gz, have 93529 columns in 397 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jetA/nostruct-align/1jetA.t2k-thin90.a2m.gz
# 1jetA.t2k-thin90.a2m with 354 sequences, total weight= 354 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01924 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jetA/info/1jetA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jetA/nostruct-align/1jetA.t2k-thin90.a2m.gz, have 94046 columns in 398 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gbs/nostruct-align/1gbs.t2k-thin90.a2m.gz
# 1gbs.t2k-thin90.a2m with 53 sequences, total weight= 39.9109 avg weight= 0.753035 33 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gbs/info/1gbs.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gbs/nostruct-align/1gbs.t2k-thin90.a2m.gz, have 94231 columns in 399 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vlyA/nostruct-align/1vlyA.t2k-thin90.a2m.gz
# 1vlyA.t2k-thin90.a2m with 146 sequences, total weight= 146 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1757 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vlyA/info/1vlyA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vlyA/nostruct-align/1vlyA.t2k-thin90.a2m.gz, have 94554 columns in 400 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vp8A/nostruct-align/1vp8A.t2k-thin90.a2m.gz
# 1vp8A.t2k-thin90.a2m with 10 sequences, total weight= 4.05355 avg weight= 0.405355 17 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vp8A/info/1vp8A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vp8A/nostruct-align/1vp8A.t2k-thin90.a2m.gz, have 94744 columns in 401 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mqkH/nostruct-align/1mqkH.t2k-thin90.a2m.gz
# 1mqkH.t2k-thin90.a2m with 8267 sequences, total weight= 32.035 avg weight= 0.00387505 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mqkH/info/1mqkH.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mqkH/nostruct-align/1mqkH.t2k-thin90.a2m.gz, have 94867 columns in 402 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m7gA/nostruct-align/1m7gA.t2k-thin90.a2m.gz
# 1m7gA.t2k-thin90.a2m with 130 sequences, total weight= 24.2816 avg weight= 0.186782 40 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m7gA/info/1m7gA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m7gA/nostruct-align/1m7gA.t2k-thin90.a2m.gz, have 95075 columns in 403 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gkmA/nostruct-align/1gkmA.t2k-thin90.a2m.gz
# 1gkmA.t2k-thin90.a2m with 126 sequences, total weight= 20.1006 avg weight= 0.159528 38 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gkmA/info/1gkmA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gkmA/nostruct-align/1gkmA.t2k-thin90.a2m.gz, have 95584 columns in 404 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oi0A/nostruct-align/1oi0A.t2k-thin90.a2m.gz
# 1oi0A.t2k-thin90.a2m with 38 sequences, total weight= 31.7583 avg weight= 0.835745 34 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oi0A/info/1oi0A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oi0A/nostruct-align/1oi0A.t2k-thin90.a2m.gz, have 95692 columns in 405 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tu9A/nostruct-align/1tu9A.t2k-thin90.a2m.gz
# 1tu9A.t2k-thin90.a2m with 37 sequences, total weight= 25.5354 avg weight= 0.690147 28 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tu9A/info/1tu9A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tu9A/nostruct-align/1tu9A.t2k-thin90.a2m.gz, have 95823 columns in 406 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xzoA/nostruct-align/1xzoA.t2k-thin90.a2m.gz
# 1xzoA.t2k-thin90.a2m with 519 sequences, total weight= 519 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21698 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xzoA/info/1xzoA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1xzoA/nostruct-align/1xzoA.t2k-thin90.a2m.gz, have 95995 columns in 407 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1yllA/nostruct-align/1yllA.t2k-thin90.a2m.gz
# 1yllA.t2k-thin90.a2m with 37 sequences, total weight= 28.5473 avg weight= 0.771548 35 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1yllA/info/1yllA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1y/1yllA/nostruct-align/1yllA.t2k-thin90.a2m.gz, have 96185 columns in 408 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xmzA/nostruct-align/1xmzA.t2k-thin90.a2m.gz
# 1xmzA.t2k-thin90.a2m with 77 sequences, total weight= 15.4593 avg weight= 0.20077 32 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xmzA/info/1xmzA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1xmzA/nostruct-align/1xmzA.t2k-thin90.a2m.gz, have 96409 columns in 409 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1aba/nostruct-align/1aba.t2k-thin90.a2m.gz
# 1aba.t2k-thin90.a2m with 129 sequences, total weight= 63.3897 avg weight= 0.491393 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1aba/info/1aba.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1a/1aba/nostruct-align/1aba.t2k-thin90.a2m.gz, have 96496 columns in 410 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i24A/nostruct-align/1i24A.t2k-thin90.a2m.gz
# 1i24A.t2k-thin90.a2m with 726 sequences, total weight= 726 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28473 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i24A/info/1i24A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i24A/nostruct-align/1i24A.t2k-thin90.a2m.gz, have 96888 columns in 411 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dk8A/nostruct-align/1dk8A.t2k-thin90.a2m.gz
# 1dk8A.t2k-thin90.a2m with 99 sequences, total weight= 99 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28687 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dk8A/info/1dk8A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dk8A/nostruct-align/1dk8A.t2k-thin90.a2m.gz, have 97035 columns in 412 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gttA/nostruct-align/1gttA.t2k-thin90.a2m.gz
# 1gttA.t2k-thin90.a2m with 253 sequences, total weight= 45.206 avg weight= 0.17868 28 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gttA/info/1gttA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gttA/nostruct-align/1gttA.t2k-thin90.a2m.gz, have 97456 columns in 413 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eokA/nostruct-align/1eokA.t2k-thin90.a2m.gz
# 1eokA.t2k-thin90.a2m with 32 sequences, total weight= 32 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09506 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eokA/info/1eokA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1eokA/nostruct-align/1eokA.t2k-thin90.a2m.gz, have 97738 columns in 414 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m6kA/nostruct-align/1m6kA.t2k-thin90.a2m.gz
# 1m6kA.t2k-thin90.a2m with 45 sequences, total weight= 45 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27895 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m6kA/info/1m6kA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m6kA/nostruct-align/1m6kA.t2k-thin90.a2m.gz, have 97988 columns in 415 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3l/3lzt/nostruct-align/3lzt.t2k-thin90.a2m.gz
# 3lzt.t2k-thin90.a2m with 87 sequences, total weight= 9.94429 avg weight= 0.114302 33 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3l/3lzt/info/3lzt.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/3l/3lzt/nostruct-align/3lzt.t2k-thin90.a2m.gz, have 98117 columns in 416 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nrjA/nostruct-align/1nrjA.t2k-thin90.a2m.gz
# 1nrjA.t2k-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.564418 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nrjA/info/1nrjA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nrjA/nostruct-align/1nrjA.t2k-thin90.a2m.gz, have 98264 columns in 417 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2b/2bbkH/nostruct-align/2bbkH.t2k-thin90.a2m.gz
# 2bbkH.t2k-thin90.a2m with 9 sequences, total weight= 6.55294 avg weight= 0.728104 16 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2b/2bbkH/info/2bbkH.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/2b/2bbkH/nostruct-align/2bbkH.t2k-thin90.a2m.gz, have 98619 columns in 418 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1ls1A/nostruct-align/1ls1A.t2k-thin90.a2m.gz
# 1ls1A.t2k-thin90.a2m with 622 sequences, total weight= 622 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18197 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1ls1A/info/1ls1A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1l/1ls1A/nostruct-align/1ls1A.t2k-thin90.a2m.gz, have 98908 columns in 419 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hp1A/nostruct-align/1hp1A.t2k-thin90.a2m.gz
# 1hp1A.t2k-thin90.a2m with 219 sequences, total weight= 219 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20167 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hp1A/info/1hp1A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hp1A/nostruct-align/1hp1A.t2k-thin90.a2m.gz, have 99424 columns in 420 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1x6iA/nostruct-align/1x6iA.t2k-thin90.a2m.gz
# 1x6iA.t2k-thin90.a2m with 88 sequences, total weight= 34.9878 avg weight= 0.397589 41 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1x6iA/info/1x6iA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1x6iA/nostruct-align/1x6iA.t2k-thin90.a2m.gz, have 99513 columns in 421 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2t/2tgi/nostruct-align/2tgi.t2k-thin90.a2m.gz
# 2tgi.t2k-thin90.a2m with 136 sequences, total weight= 36.8852 avg weight= 0.271215 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2t/2tgi/info/2tgi.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/2t/2tgi/nostruct-align/2tgi.t2k-thin90.a2m.gz, have 99625 columns in 422 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gqiA/nostruct-align/1gqiA.t2k-thin90.a2m.gz
# 1gqiA.t2k-thin90.a2m with 17 sequences, total weight= 5.42997 avg weight= 0.31941 22 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gqiA/info/1gqiA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gqiA/nostruct-align/1gqiA.t2k-thin90.a2m.gz, have 100333 columns in 423 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gmiA/nostruct-align/1gmiA.t2k-thin90.a2m.gz
# 1gmiA.t2k-thin90.a2m with 176 sequences, total weight= 176 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15695 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gmiA/info/1gmiA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gmiA/nostruct-align/1gmiA.t2k-thin90.a2m.gz, have 100468 columns in 424 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h12A/nostruct-align/1h12A.t2k-thin90.a2m.gz
# 1h12A.t2k-thin90.a2m with 34 sequences, total weight= 34 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20954 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h12A/info/1h12A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h12A/nostruct-align/1h12A.t2k-thin90.a2m.gz, have 100872 columns in 425 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w8kA/nostruct-align/1w8kA.t2k-thin90.a2m.gz
# 1w8kA.t2k-thin90.a2m with 36 sequences, total weight= 12.5619 avg weight= 0.348943 22 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w8kA/info/1w8kA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1w8kA/nostruct-align/1w8kA.t2k-thin90.a2m.gz, have 101234 columns in 426 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jl0A/nostruct-align/1jl0A.t2k-thin90.a2m.gz
# 1jl0A.t2k-thin90.a2m with 54 sequences, total weight= 16.0167 avg weight= 0.296606 29 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jl0A/info/1jl0A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jl0A/nostruct-align/1jl0A.t2k-thin90.a2m.gz, have 101544 columns in 427 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a92A/nostruct-align/1a92A.t2k-thin90.a2m.gz
# 1a92A.t2k-thin90.a2m with 19 sequences, total weight= 2.75484 avg weight= 0.144991 15 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1a92A/info/1a92A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1a/1a92A/nostruct-align/1a92A.t2k-thin90.a2m.gz, have 101594 columns in 428 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kqfC/nostruct-align/1kqfC.t2k-thin90.a2m.gz
# 1kqfC.t2k-thin90.a2m with 78 sequences, total weight= 78 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18823 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kqfC/info/1kqfC.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kqfC/nostruct-align/1kqfC.t2k-thin90.a2m.gz, have 101810 columns in 429 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t6eX/nostruct-align/1t6eX.t2k-thin90.a2m.gz
# 1t6eX.t2k-thin90.a2m with 179 sequences, total weight= 175.562 avg weight= 0.980791 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t6eX/info/1t6eX.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t6eX/nostruct-align/1t6eX.t2k-thin90.a2m.gz, have 102172 columns in 430 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uuqA/nostruct-align/1uuqA.t2k-thin90.a2m.gz
# 1uuqA.t2k-thin90.a2m with 64 sequences, total weight= 64 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21027 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uuqA/info/1uuqA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uuqA/nostruct-align/1uuqA.t2k-thin90.a2m.gz, have 102582 columns in 431 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xkzA/nostruct-align/1xkzA.t2k-thin90.a2m.gz
# 1xkzA.t2k-thin90.a2m with 99 sequences, total weight= 99 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27922 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xkzA/info/1xkzA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1xkzA/nostruct-align/1xkzA.t2k-thin90.a2m.gz, have 102826 columns in 432 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dbxA/nostruct-align/1dbxA.t2k-thin90.a2m.gz
# 1dbxA.t2k-thin90.a2m with 147 sequences, total weight= 82.6304 avg weight= 0.562111 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30048 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dbxA/info/1dbxA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dbxA/nostruct-align/1dbxA.t2k-thin90.a2m.gz, have 102978 columns in 433 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hq1A/nostruct-align/1hq1A.t2k-thin90.a2m.gz
# 1hq1A.t2k-thin90.a2m with 147 sequences, total weight= 12.9707 avg weight= 0.0882362 37 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hq1A/info/1hq1A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hq1A/nostruct-align/1hq1A.t2k-thin90.a2m.gz, have 103054 columns in 434 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j31A/nostruct-align/1j31A.t2k-thin90.a2m.gz
# 1j31A.t2k-thin90.a2m with 597 sequences, total weight= 597 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21999 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j31A/info/1j31A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j31A/nostruct-align/1j31A.t2k-thin90.a2m.gz, have 103316 columns in 435 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r6dA/nostruct-align/1r6dA.t2k-thin90.a2m.gz
# 1r6dA.t2k-thin90.a2m with 2021 sequences, total weight= 2021 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03783 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r6dA/info/1r6dA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r6dA/nostruct-align/1r6dA.t2k-thin90.a2m.gz, have 103638 columns in 436 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r29A/nostruct-align/1r29A.t2k-thin90.a2m.gz
# 1r29A.t2k-thin90.a2m with 558 sequences, total weight= 558 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27248 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r29A/info/1r29A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r29A/nostruct-align/1r29A.t2k-thin90.a2m.gz, have 103760 columns in 437 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xg4A/nostruct-align/1xg4A.t2k-thin90.a2m.gz
# 1xg4A.t2k-thin90.a2m with 263 sequences, total weight= 92.5813 avg weight= 0.35202 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30102 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xg4A/info/1xg4A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1xg4A/nostruct-align/1xg4A.t2k-thin90.a2m.gz, have 104047 columns in 438 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1x9iA/nostruct-align/1x9iA.t2k-thin90.a2m.gz
# 1x9iA.t2k-thin90.a2m with 198 sequences, total weight= 198 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22658 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1x9iA/info/1x9iA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1x9iA/nostruct-align/1x9iA.t2k-thin90.a2m.gz, have 104347 columns in 439 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xy7A/nostruct-align/1xy7A.t2k-thin90.a2m.gz
# 1xy7A.t2k-thin90.a2m with 80 sequences, total weight= 75.0922 avg weight= 0.938652 40 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xy7A/info/1xy7A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1xy7A/nostruct-align/1xy7A.t2k-thin90.a2m.gz, have 104467 columns in 440 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gs9A/nostruct-align/1gs9A.t2k-thin90.a2m.gz
# 1gs9A.t2k-thin90.a2m with 70 sequences, total weight= 39.4571 avg weight= 0.563674 43 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gs9A/info/1gs9A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gs9A/nostruct-align/1gs9A.t2k-thin90.a2m.gz, have 104611 columns in 441 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s5uA/nostruct-align/1s5uA.t2k-thin90.a2m.gz
# 1s5uA.t2k-thin90.a2m with 237 sequences, total weight= 237 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20398 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s5uA/info/1s5uA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1s/1s5uA/nostruct-align/1s5uA.t2k-thin90.a2m.gz, have 104740 columns in 442 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s3cA/nostruct-align/1s3cA.t2k-thin90.a2m.gz
# 1s3cA.t2k-thin90.a2m with 196 sequences, total weight= 38.0518 avg weight= 0.194142 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s3cA/info/1s3cA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1s/1s3cA/nostruct-align/1s3cA.t2k-thin90.a2m.gz, have 104878 columns in 443 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pjxA/nostruct-align/1pjxA.t2k-thin90.a2m.gz
# 1pjxA.t2k-thin90.a2m with 206 sequences, total weight= 206 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15455 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pjxA/info/1pjxA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pjxA/nostruct-align/1pjxA.t2k-thin90.a2m.gz, have 105192 columns in 444 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hyp/nostruct-align/1hyp.t2k-thin90.a2m.gz
# 1hyp.t2k-thin90.a2m with 70 sequences, total weight= 7.1961 avg weight= 0.102801 32 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hyp/info/1hyp.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hyp/nostruct-align/1hyp.t2k-thin90.a2m.gz, have 105267 columns in 445 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jndA/nostruct-align/1jndA.t2k-thin90.a2m.gz
# 1jndA.t2k-thin90.a2m with 261 sequences, total weight= 261 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24002 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jndA/info/1jndA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jndA/nostruct-align/1jndA.t2k-thin90.a2m.gz, have 105667 columns in 446 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mj4A/nostruct-align/1mj4A.t2k-thin90.a2m.gz
# 1mj4A.t2k-thin90.a2m with 171 sequences, total weight= 41.6491 avg weight= 0.243562 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mj4A/info/1mj4A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mj4A/nostruct-align/1mj4A.t2k-thin90.a2m.gz, have 105746 columns in 447 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vmeA/nostruct-align/1vmeA.t2k-thin90.a2m.gz
# 1vmeA.t2k-thin90.a2m with 349 sequences, total weight= 349 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17079 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vmeA/info/1vmeA.stride-mixed.CB-burial-12-7
WARNING: skipping b, since it is lower case.
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vmeA/nostruct-align/1vmeA.t2k-thin90.a2m.gz, have 106147 columns in 448 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vpjA/nostruct-align/1vpjA.t2k-thin90.a2m.gz
# 1vpjA.t2k-thin90.a2m with 84 sequences, total weight= 9.68293 avg weight= 0.115273 31 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vpjA/info/1vpjA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vpjA/nostruct-align/1vpjA.t2k-thin90.a2m.gz, have 106325 columns in 449 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2b/2bikB/nostruct-align/2bikB.t2k-thin90.a2m.gz
# 2bikB.t2k-thin90.a2m with 9264 sequences, total weight= 9264 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15208 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2b/2bikB/info/2bikB.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/2b/2bikB/nostruct-align/2bikB.t2k-thin90.a2m.gz, have 106598 columns in 450 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mnnA/nostruct-align/1mnnA.t2k-thin90.a2m.gz
# 1mnnA.t2k-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.768833 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mnnA/info/1mnnA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mnnA/nostruct-align/1mnnA.t2k-thin90.a2m.gz, have 106888 columns in 451 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j5xA/nostruct-align/1j5xA.t2k-thin90.a2m.gz
# 1j5xA.t2k-thin90.a2m with 346 sequences, total weight= 346 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24957 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j5xA/info/1j5xA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j5xA/nostruct-align/1j5xA.t2k-thin90.a2m.gz, have 107207 columns in 452 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bx7/nostruct-align/1bx7.t2k-thin90.a2m.gz
# 1bx7.t2k-thin90.a2m with 6 sequences, total weight= 3.25243 avg weight= 0.542072 19 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bx7/info/1bx7.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1b/1bx7/nostruct-align/1bx7.t2k-thin90.a2m.gz, have 107258 columns in 453 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mdoA/nostruct-align/1mdoA.t2k-thin90.a2m.gz
# 1mdoA.t2k-thin90.a2m with 783 sequences, total weight= 783 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.991609 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mdoA/info/1mdoA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mdoA/nostruct-align/1mdoA.t2k-thin90.a2m.gz, have 107623 columns in 454 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r9lA/nostruct-align/1r9lA.t2k-thin90.a2m.gz
# 1r9lA.t2k-thin90.a2m with 119 sequences, total weight= 62.97 avg weight= 0.52916 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r9lA/info/1r9lA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r9lA/nostruct-align/1r9lA.t2k-thin90.a2m.gz, have 107932 columns in 455 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pp0A/nostruct-align/1pp0A.t2k-thin90.a2m.gz
# 1pp0A.t2k-thin90.a2m with 9 sequences, total weight= 6.85402 avg weight= 0.761558 16 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pp0A/info/1pp0A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pp0A/nostruct-align/1pp0A.t2k-thin90.a2m.gz, have 108123 columns in 456 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r8sA/nostruct-align/1r8sA.t2k-thin90.a2m.gz
# 1r8sA.t2k-thin90.a2m with 1125 sequences, total weight= 1125 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20283 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r8sA/info/1r8sA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r8sA/nostruct-align/1r8sA.t2k-thin90.a2m.gz, have 108283 columns in 457 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xvqA/nostruct-align/1xvqA.t2k-thin90.a2m.gz
# 1xvqA.t2k-thin90.a2m with 620 sequences, total weight= 183.658 avg weight= 0.296223 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30471 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xvqA/info/1xvqA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1xvqA/nostruct-align/1xvqA.t2k-thin90.a2m.gz, have 108443 columns in 458 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kgsA/nostruct-align/1kgsA.t2k-thin90.a2m.gz
# 1kgsA.t2k-thin90.a2m with 1645 sequences, total weight= 1645 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19384 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kgsA/info/1kgsA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kgsA/nostruct-align/1kgsA.t2k-thin90.a2m.gz, have 108662 columns in 459 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xyiA/nostruct-align/1xyiA.t2k-thin90.a2m.gz
# 1xyiA.t2k-thin90.a2m with 5 sequences, total weight= 2.39294 avg weight= 0.478589 9 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xyiA/info/1xyiA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1xyiA/nostruct-align/1xyiA.t2k-thin90.a2m.gz, have 108728 columns in 460 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ox0A/nostruct-align/1ox0A.t2k-thin90.a2m.gz
# 1ox0A.t2k-thin90.a2m with 1006 sequences, total weight= 510.496 avg weight= 0.507451 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31047 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ox0A/info/1ox0A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1ox0A/nostruct-align/1ox0A.t2k-thin90.a2m.gz, have 109142 columns in 461 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o7nB/nostruct-align/1o7nB.t2k-thin90.a2m.gz
# 1o7nB.t2k-thin90.a2m with 46 sequences, total weight= 31.633 avg weight= 0.687674 32 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o7nB/info/1o7nB.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o7nB/nostruct-align/1o7nB.t2k-thin90.a2m.gz, have 109335 columns in 462 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2t/2tpsA/nostruct-align/2tpsA.t2k-thin90.a2m.gz
# 2tpsA.t2k-thin90.a2m with 231 sequences, total weight= 231 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02664 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2t/2tpsA/info/2tpsA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/2t/2tpsA/nostruct-align/2tpsA.t2k-thin90.a2m.gz, have 109561 columns in 463 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oqjA/nostruct-align/1oqjA.t2k-thin90.a2m.gz
# 1oqjA.t2k-thin90.a2m with 19 sequences, total weight= 8.62823 avg weight= 0.454117 23 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oqjA/info/1oqjA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oqjA/nostruct-align/1oqjA.t2k-thin90.a2m.gz, have 109651 columns in 464 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rwrA/nostruct-align/1rwrA.t2k-thin90.a2m.gz
# 1rwrA.t2k-thin90.a2m with 146 sequences, total weight= 146 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29244 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rwrA/info/1rwrA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rwrA/nostruct-align/1rwrA.t2k-thin90.a2m.gz, have 109948 columns in 465 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dbwA/nostruct-align/1dbwA.t2k-thin90.a2m.gz
# 1dbwA.t2k-thin90.a2m with 1465 sequences, total weight= 288.506 avg weight= 0.196932 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3185 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dbwA/info/1dbwA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dbwA/nostruct-align/1dbwA.t2k-thin90.a2m.gz, have 110071 columns in 466 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jkxA/nostruct-align/1jkxA.t2k-thin90.a2m.gz
# 1jkxA.t2k-thin90.a2m with 392 sequences, total weight= 136.975 avg weight= 0.349426 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30192 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jkxA/info/1jkxA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jkxA/nostruct-align/1jkxA.t2k-thin90.a2m.gz, have 110280 columns in 467 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1b5pA/nostruct-align/1b5pA.t2k-thin90.a2m.gz
# 1b5pA.t2k-thin90.a2m with 1971 sequences, total weight= 1971 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.931795 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1b5pA/info/1b5pA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1b/1b5pA/nostruct-align/1b5pA.t2k-thin90.a2m.gz, have 110662 columns in 468 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qkrA/nostruct-align/1qkrA.t2k-thin90.a2m.gz
# 1qkrA.t2k-thin90.a2m with 20 sequences, total weight= 10.384 avg weight= 0.519202 20 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qkrA/info/1qkrA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qkrA/nostruct-align/1qkrA.t2k-thin90.a2m.gz, have 110843 columns in 469 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m45A/nostruct-align/1m45A.t2k-thin90.a2m.gz
# 1m45A.t2k-thin90.a2m with 730 sequences, total weight= 730 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20706 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m45A/info/1m45A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m45A/nostruct-align/1m45A.t2k-thin90.a2m.gz, have 110985 columns in 470 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ui0A/nostruct-align/1ui0A.t2k-thin90.a2m.gz
# 1ui0A.t2k-thin90.a2m with 140 sequences, total weight= 97.4108 avg weight= 0.695791 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ui0A/info/1ui0A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1ui0A/nostruct-align/1ui0A.t2k-thin90.a2m.gz, have 111177 columns in 471 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oxxK/nostruct-align/1oxxK.t2k-thin90.a2m.gz
# 1oxxK.t2k-thin90.a2m with 10776 sequences, total weight= 10776 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29273 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oxxK/info/1oxxK.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oxxK/nostruct-align/1oxxK.t2k-thin90.a2m.gz, have 111529 columns in 472 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a6m/nostruct-align/1a6m.t2k-thin90.a2m.gz
# 1a6m.t2k-thin90.a2m with 479 sequences, total weight= 98.0817 avg weight= 0.204763 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30423 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1a6m/info/1a6m.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1a/1a6m/nostruct-align/1a6m.t2k-thin90.a2m.gz, have 111680 columns in 473 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cnv/nostruct-align/1cnv.t2k-thin90.a2m.gz
# 1cnv.t2k-thin90.a2m with 100 sequences, total weight= 34.4733 avg weight= 0.344733 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cnv/info/1cnv.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cnv/nostruct-align/1cnv.t2k-thin90.a2m.gz, have 111963 columns in 474 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lycA/nostruct-align/1lycA.t2k-thin90.a2m.gz
# 1lycA.t2k-thin90.a2m with 211 sequences, total weight= 30.6609 avg weight= 0.145312 41 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lycA/info/1lycA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lycA/nostruct-align/1lycA.t2k-thin90.a2m.gz, have 112299 columns in 475 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ewfA/nostruct-align/1ewfA.t2k-thin90.a2m.gz
# 1ewfA.t2k-thin90.a2m with 51 sequences, total weight= 51 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13741 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ewfA/info/1ewfA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1ewfA/nostruct-align/1ewfA.t2k-thin90.a2m.gz, have 112755 columns in 476 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dypA/nostruct-align/1dypA.t2k-thin90.a2m.gz
# 1dypA.t2k-thin90.a2m with 149 sequences, total weight= 149 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14052 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dypA/info/1dypA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dypA/nostruct-align/1dypA.t2k-thin90.a2m.gz, have 113026 columns in 477 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r6wA/nostruct-align/1r6wA.t2k-thin90.a2m.gz
# 1r6wA.t2k-thin90.a2m with 140 sequences, total weight= 140 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18735 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r6wA/info/1r6wA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r6wA/nostruct-align/1r6wA.t2k-thin90.a2m.gz, have 113347 columns in 478 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1u9cA/nostruct-align/1u9cA.t2k-thin90.a2m.gz
# 1u9cA.t2k-thin90.a2m with 343 sequences, total weight= 343 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.275 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1u9cA/info/1u9cA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1u9cA/nostruct-align/1u9cA.t2k-thin90.a2m.gz, have 113568 columns in 479 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1y0kA/nostruct-align/1y0kA.t2k-thin90.a2m.gz
# 1y0kA.t2k-thin90.a2m with 4 sequences, total weight= 2.07261 avg weight= 0.518152 8 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1y0kA/info/1y0kA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1y/1y0kA/nostruct-align/1y0kA.t2k-thin90.a2m.gz, have 113748 columns in 480 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kptA/nostruct-align/1kptA.t2k-thin90.a2m.gz
# 1kptA.t2k-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.65574 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kptA/info/1kptA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kptA/nostruct-align/1kptA.t2k-thin90.a2m.gz, have 113853 columns in 481 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nvmB/nostruct-align/1nvmB.t2k-thin90.a2m.gz
# 1nvmB.t2k-thin90.a2m with 36 sequences, total weight= 5.06929 avg weight= 0.140814 22 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nvmB/info/1nvmB.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nvmB/nostruct-align/1nvmB.t2k-thin90.a2m.gz, have 114165 columns in 482 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t5bA/nostruct-align/1t5bA.t2k-thin90.a2m.gz
# 1t5bA.t2k-thin90.a2m with 346 sequences, total weight= 346 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.06078 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t5bA/info/1t5bA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t5bA/nostruct-align/1t5bA.t2k-thin90.a2m.gz, have 114364 columns in 483 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tw6A/nostruct-align/1tw6A.t2k-thin90.a2m.gz
# 1tw6A.t2k-thin90.a2m with 202 sequences, total weight= 46.623 avg weight= 0.230807 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tw6A/info/1tw6A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tw6A/nostruct-align/1tw6A.t2k-thin90.a2m.gz, have 114454 columns in 484 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1u55A/nostruct-align/1u55A.t2k-thin90.a2m.gz
# 1u55A.t2k-thin90.a2m with 28 sequences, total weight= 28 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25658 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1u55A/info/1u55A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1u55A/nostruct-align/1u55A.t2k-thin90.a2m.gz, have 114642 columns in 485 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gheA/nostruct-align/1gheA.t2k-thin90.a2m.gz
# 1gheA.t2k-thin90.a2m with 540 sequences, total weight= 540 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.891514 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gheA/info/1gheA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gheA/nostruct-align/1gheA.t2k-thin90.a2m.gz, have 114812 columns in 486 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1smxA/nostruct-align/1smxA.t2k-thin90.a2m.gz
# 1smxA.t2k-thin90.a2m with 180 sequences, total weight= 26.1955 avg weight= 0.145531 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1smxA/info/1smxA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1s/1smxA/nostruct-align/1smxA.t2k-thin90.a2m.gz, have 114899 columns in 487 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pqhA/nostruct-align/1pqhA.t2k-thin90.a2m.gz
# 1pqhA.t2k-thin90.a2m with 55 sequences, total weight= 6.67143 avg weight= 0.121299 28 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pqhA/info/1pqhA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pqhA/nostruct-align/1pqhA.t2k-thin90.a2m.gz, have 115018 columns in 488 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jfuA/nostruct-align/1jfuA.t2k-thin90.a2m.gz
# 1jfuA.t2k-thin90.a2m with 514 sequences, total weight= 514 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03211 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jfuA/info/1jfuA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jfuA/nostruct-align/1jfuA.t2k-thin90.a2m.gz, have 115194 columns in 489 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w9aA/nostruct-align/1w9aA.t2k-thin90.a2m.gz
# 1w9aA.t2k-thin90.a2m with 94 sequences, total weight= 94 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15088 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w9aA/info/1w9aA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1w9aA/nostruct-align/1w9aA.t2k-thin90.a2m.gz, have 115336 columns in 490 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l6rA/nostruct-align/1l6rA.t2k-thin90.a2m.gz
# 1l6rA.t2k-thin90.a2m with 323 sequences, total weight= 323 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10105 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l6rA/info/1l6rA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1l/1l6rA/nostruct-align/1l6rA.t2k-thin90.a2m.gz, have 115561 columns in 491 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r6xA/nostruct-align/1r6xA.t2k-thin90.a2m.gz
# 1r6xA.t2k-thin90.a2m with 75 sequences, total weight= 21.3554 avg weight= 0.284739 36 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r6xA/info/1r6xA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r6xA/nostruct-align/1r6xA.t2k-thin90.a2m.gz, have 115947 columns in 492 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qtnA/nostruct-align/1qtnA.t2k-thin90.a2m.gz
# 1qtnA.t2k-thin90.a2m with 98 sequences, total weight= 26.7483 avg weight= 0.272942 45 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qtnA/info/1qtnA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qtnA/nostruct-align/1qtnA.t2k-thin90.a2m.gz, have 116099 columns in 493 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wu9A/nostruct-align/1wu9A.t2k-thin90.a2m.gz
# 1wu9A.t2k-thin90.a2m with 46 sequences, total weight= 8.9869 avg weight= 0.195367 29 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wu9A/info/1wu9A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1wu9A/nostruct-align/1wu9A.t2k-thin90.a2m.gz, have 116158 columns in 494 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fs1B/nostruct-align/1fs1B.t2k-thin90.a2m.gz
# 1fs1B.t2k-thin90.a2m with 99 sequences, total weight= 28.3217 avg weight= 0.286077 40 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fs1B/info/1fs1B.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fs1B/nostruct-align/1fs1B.t2k-thin90.a2m.gz, have 116274 columns in 495 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jl1A/nostruct-align/1jl1A.t2k-thin90.a2m.gz
# 1jl1A.t2k-thin90.a2m with 165 sequences, total weight= 98.8683 avg weight= 0.599202 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jl1A/info/1jl1A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jl1A/nostruct-align/1jl1A.t2k-thin90.a2m.gz, have 116426 columns in 496 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hm9A/nostruct-align/1hm9A.t2k-thin90.a2m.gz
# 1hm9A.t2k-thin90.a2m with 691 sequences, total weight= 691 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08302 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hm9A/info/1hm9A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hm9A/nostruct-align/1hm9A.t2k-thin90.a2m.gz, have 116884 columns in 497 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oboA/nostruct-align/1oboA.t2k-thin90.a2m.gz
# 1oboA.t2k-thin90.a2m with 165 sequences, total weight= 165 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27517 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oboA/info/1oboA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oboA/nostruct-align/1oboA.t2k-thin90.a2m.gz, have 117053 columns in 498 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qwnA/nostruct-align/1qwnA.t2k-thin90.a2m.gz
# 1qwnA.t2k-thin90.a2m with 94 sequences, total weight= 94 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14716 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qwnA/info/1qwnA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qwnA/nostruct-align/1qwnA.t2k-thin90.a2m.gz, have 118067 columns in 499 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gqnA/nostruct-align/1gqnA.t2k-thin90.a2m.gz
# 1gqnA.t2k-thin90.a2m with 58 sequences, total weight= 40.7925 avg weight= 0.703319 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gqnA/info/1gqnA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gqnA/nostruct-align/1gqnA.t2k-thin90.a2m.gz, have 118319 columns in 500 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iuqA/nostruct-align/1iuqA.t2k-thin90.a2m.gz
# 1iuqA.t2k-thin90.a2m with 20 sequences, total weight= 8.02695 avg weight= 0.401347 18 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iuqA/info/1iuqA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1iuqA/nostruct-align/1iuqA.t2k-thin90.a2m.gz, have 118676 columns in 501 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v6pA/nostruct-align/1v6pA.t2k-thin90.a2m.gz
# 1v6pA.t2k-thin90.a2m with 145 sequences, total weight= 17.1085 avg weight= 0.11799 44 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v6pA/info/1v6pA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v6pA/nostruct-align/1v6pA.t2k-thin90.a2m.gz, have 118738 columns in 502 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1azo/nostruct-align/1azo.t2k-thin90.a2m.gz
# 1azo.t2k-thin90.a2m with 15 sequences, total weight= 5.82633 avg weight= 0.388422 18 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1azo/info/1azo.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1a/1azo/nostruct-align/1azo.t2k-thin90.a2m.gz, have 118952 columns in 503 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cy5A/nostruct-align/1cy5A.t2k-thin90.a2m.gz
# 1cy5A.t2k-thin90.a2m with 7 sequences, total weight= 5.76599 avg weight= 0.823713 14 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cy5A/info/1cy5A.stride-mixed.CB-burial-12-7
WARNING: skipping c, since it is lower case.
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cy5A/nostruct-align/1cy5A.t2k-thin90.a2m.gz, have 119044 columns in 504 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v2zA/nostruct-align/1v2zA.t2k-thin90.a2m.gz
# 1v2zA.t2k-thin90.a2m with 9 sequences, total weight= 3.40093 avg weight= 0.377881 14 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v2zA/info/1v2zA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v2zA/nostruct-align/1v2zA.t2k-thin90.a2m.gz, have 119150 columns in 505 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m4lA/nostruct-align/1m4lA.t2k-thin90.a2m.gz
# 1m4lA.t2k-thin90.a2m with 148 sequences, total weight= 115.941 avg weight= 0.783384 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30043 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m4lA/info/1m4lA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m4lA/nostruct-align/1m4lA.t2k-thin90.a2m.gz, have 119457 columns in 506 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gu7A/nostruct-align/1gu7A.t2k-thin90.a2m.gz
# 1gu7A.t2k-thin90.a2m with 555 sequences, total weight= 555 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17631 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gu7A/info/1gu7A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gu7A/nostruct-align/1gu7A.t2k-thin90.a2m.gz, have 119821 columns in 507 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ogoX/nostruct-align/1ogoX.t2k-thin90.a2m.gz
# 1ogoX.t2k-thin90.a2m with 5 sequences, total weight= 3.81006 avg weight= 0.762011 12 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ogoX/info/1ogoX.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1ogoX/nostruct-align/1ogoX.t2k-thin90.a2m.gz, have 120393 columns in 508 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1ryaA/nostruct-align/1ryaA.t2k-thin90.a2m.gz
# 1ryaA.t2k-thin90.a2m with 586 sequences, total weight= 586 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08267 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1ryaA/info/1ryaA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1ryaA/nostruct-align/1ryaA.t2k-thin90.a2m.gz, have 120553 columns in 509 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q0rA/nostruct-align/1q0rA.t2k-thin90.a2m.gz
# 1q0rA.t2k-thin90.a2m with 999 sequences, total weight= 999 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.861661 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q0rA/info/1q0rA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q0rA/nostruct-align/1q0rA.t2k-thin90.a2m.gz, have 120850 columns in 510 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fr2A/nostruct-align/1fr2A.t2k-thin90.a2m.gz
# 1fr2A.t2k-thin90.a2m with 15 sequences, total weight= 4.37636 avg weight= 0.291757 19 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fr2A/info/1fr2A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fr2A/nostruct-align/1fr2A.t2k-thin90.a2m.gz, have 120933 columns in 511 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e29A/nostruct-align/1e29A.t2k-thin90.a2m.gz
# 1e29A.t2k-thin90.a2m with 103 sequences, total weight= 55.159 avg weight= 0.535525 40 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e29A/info/1e29A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e29A/nostruct-align/1e29A.t2k-thin90.a2m.gz, have 121068 columns in 512 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gveA/nostruct-align/1gveA.t2k-thin90.a2m.gz
# 1gveA.t2k-thin90.a2m with 453 sequences, total weight= 453 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28575 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gveA/info/1gveA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gveA/nostruct-align/1gveA.t2k-thin90.a2m.gz, have 121392 columns in 513 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k3iA/nostruct-align/1k3iA.t2k-thin90.a2m.gz
# 1k3iA.t2k-thin90.a2m with 298 sequences, total weight= 298 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02769 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k3iA/info/1k3iA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k3iA/nostruct-align/1k3iA.t2k-thin90.a2m.gz, have 122043 columns in 514 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g2nA/nostruct-align/1g2nA.t2k-thin90.a2m.gz
# 1g2nA.t2k-thin90.a2m with 295 sequences, total weight= 295 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.968179 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g2nA/info/1g2nA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1g2nA/nostruct-align/1g2nA.t2k-thin90.a2m.gz, have 122289 columns in 515 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uuyA/nostruct-align/1uuyA.t2k-thin90.a2m.gz
# 1uuyA.t2k-thin90.a2m with 292 sequences, total weight= 166.234 avg weight= 0.569296 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30179 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uuyA/info/1uuyA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uuyA/nostruct-align/1uuyA.t2k-thin90.a2m.gz, have 122450 columns in 516 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jo8A/nostruct-align/1jo8A.t2k-thin90.a2m.gz
# 1jo8A.t2k-thin90.a2m with 383 sequences, total weight= 49.8204 avg weight= 0.130079 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30069 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jo8A/info/1jo8A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jo8A/nostruct-align/1jo8A.t2k-thin90.a2m.gz, have 122508 columns in 517 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pz7A/nostruct-align/1pz7A.t2k-thin90.a2m.gz
# 1pz7A.t2k-thin90.a2m with 305 sequences, total weight= 305 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.968487 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pz7A/info/1pz7A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pz7A/nostruct-align/1pz7A.t2k-thin90.a2m.gz, have 122696 columns in 518 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n8kA/nostruct-align/1n8kA.t2k-thin90.a2m.gz
# 1n8kA.t2k-thin90.a2m with 1135 sequences, total weight= 1135 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2242 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n8kA/info/1n8kA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n8kA/nostruct-align/1n8kA.t2k-thin90.a2m.gz, have 123070 columns in 519 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jx4A/nostruct-align/1jx4A.t2k-thin90.a2m.gz
# 1jx4A.t2k-thin90.a2m with 201 sequences, total weight= 114.531 avg weight= 0.569808 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30153 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jx4A/info/1jx4A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jx4A/nostruct-align/1jx4A.t2k-thin90.a2m.gz, have 123411 columns in 520 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e87A/nostruct-align/1e87A.t2k-thin90.a2m.gz
# 1e87A.t2k-thin90.a2m with 477 sequences, total weight= 477 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11103 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e87A/info/1e87A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e87A/nostruct-align/1e87A.t2k-thin90.a2m.gz, have 123528 columns in 521 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kjqA/nostruct-align/1kjqA.t2k-thin90.a2m.gz
# 1kjqA.t2k-thin90.a2m with 503 sequences, total weight= 503 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17077 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kjqA/info/1kjqA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kjqA/nostruct-align/1kjqA.t2k-thin90.a2m.gz, have 123916 columns in 522 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jsdA/nostruct-align/1jsdA.t2k-thin90.a2m.gz
# 1jsdA.t2k-thin90.a2m with 53 sequences, total weight= 8.88536 avg weight= 0.167648 27 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jsdA/info/1jsdA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jsdA/nostruct-align/1jsdA.t2k-thin90.a2m.gz, have 124233 columns in 523 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1it2A/nostruct-align/1it2A.t2k-thin90.a2m.gz
# 1it2A.t2k-thin90.a2m with 423 sequences, total weight= 111.305 avg weight= 0.263133 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30316 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1it2A/info/1it2A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1it2A/nostruct-align/1it2A.t2k-thin90.a2m.gz, have 124379 columns in 524 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qb7A/nostruct-align/1qb7A.t2k-thin90.a2m.gz
# 1qb7A.t2k-thin90.a2m with 202 sequences, total weight= 202 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16991 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qb7A/info/1qb7A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qb7A/nostruct-align/1qb7A.t2k-thin90.a2m.gz, have 124615 columns in 525 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vbwA/nostruct-align/1vbwA.t2k-thin90.a2m.gz
# 1vbwA.t2k-thin90.a2m with 65 sequences, total weight= 14.3061 avg weight= 0.220093 32 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vbwA/info/1vbwA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vbwA/nostruct-align/1vbwA.t2k-thin90.a2m.gz, have 124683 columns in 526 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ubkS/nostruct-align/1ubkS.t2k-thin90.a2m.gz
# 1ubkS.t2k-thin90.a2m with 143 sequences, total weight= 51.1217 avg weight= 0.357495 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ubkS/info/1ubkS.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1ubkS/nostruct-align/1ubkS.t2k-thin90.a2m.gz, have 124950 columns in 527 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jykA/nostruct-align/1jykA.t2k-thin90.a2m.gz
# 1jykA.t2k-thin90.a2m with 430 sequences, total weight= 430 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13037 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jykA/info/1jykA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jykA/nostruct-align/1jykA.t2k-thin90.a2m.gz, have 125179 columns in 528 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uv4A/nostruct-align/1uv4A.t2k-thin90.a2m.gz
# 1uv4A.t2k-thin90.a2m with 215 sequences, total weight= 215 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11296 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uv4A/info/1uv4A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uv4A/nostruct-align/1uv4A.t2k-thin90.a2m.gz, have 125470 columns in 529 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o4yA/nostruct-align/1o4yA.t2k-thin90.a2m.gz
# 1o4yA.t2k-thin90.a2m with 52 sequences, total weight= 52 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21856 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o4yA/info/1o4yA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o4yA/nostruct-align/1o4yA.t2k-thin90.a2m.gz, have 125740 columns in 530 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pkoA/nostruct-align/1pkoA.t2k-thin90.a2m.gz
# 1pkoA.t2k-thin90.a2m with 1243 sequences, total weight= 1243 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10989 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pkoA/info/1pkoA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pkoA/nostruct-align/1pkoA.t2k-thin90.a2m.gz, have 125864 columns in 531 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1urrA/nostruct-align/1urrA.t2k-thin90.a2m.gz
# 1urrA.t2k-thin90.a2m with 145 sequences, total weight= 42.0414 avg weight= 0.289941 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1urrA/info/1urrA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1urrA/nostruct-align/1urrA.t2k-thin90.a2m.gz, have 125961 columns in 532 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1x7yB/nostruct-align/1x7yB.t2k-thin90.a2m.gz
# 1x7yB.t2k-thin90.a2m with 634 sequences, total weight= 229.672 avg weight= 0.362259 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30845 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1x7yB/info/1x7yB.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1x7yB/nostruct-align/1x7yB.t2k-thin90.a2m.gz, have 126290 columns in 533 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kveA/nostruct-align/1kveA.t2k-thin90.a2m.gz
# 1kveA.t2k-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.697962 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kveA/info/1kveA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kveA/nostruct-align/1kveA.t2k-thin90.a2m.gz, have 126353 columns in 534 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kp6A/nostruct-align/1kp6A.t2k-thin90.a2m.gz
# 1kp6A.t2k-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.617161 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kp6A/info/1kp6A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kp6A/nostruct-align/1kp6A.t2k-thin90.a2m.gz, have 126432 columns in 535 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e5kA/nostruct-align/1e5kA.t2k-thin90.a2m.gz
# 1e5kA.t2k-thin90.a2m with 254 sequences, total weight= 254 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05367 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e5kA/info/1e5kA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e5kA/nostruct-align/1e5kA.t2k-thin90.a2m.gz, have 126620 columns in 536 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eajA/nostruct-align/1eajA.t2k-thin90.a2m.gz
# 1eajA.t2k-thin90.a2m with 2813 sequences, total weight= 2813 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28903 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eajA/info/1eajA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1eajA/nostruct-align/1eajA.t2k-thin90.a2m.gz, have 126744 columns in 537 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lzlA/nostruct-align/1lzlA.t2k-thin90.a2m.gz
# 1lzlA.t2k-thin90.a2m with 630 sequences, total weight= 630 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02672 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lzlA/info/1lzlA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lzlA/nostruct-align/1lzlA.t2k-thin90.a2m.gz, have 127061 columns in 538 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jo0A/nostruct-align/1jo0A.t2k-thin90.a2m.gz
# 1jo0A.t2k-thin90.a2m with 91 sequences, total weight= 46.0369 avg weight= 0.5059 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jo0A/info/1jo0A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jo0A/nostruct-align/1jo0A.t2k-thin90.a2m.gz, have 127158 columns in 539 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sqeA/nostruct-align/1sqeA.t2k-thin90.a2m.gz
# 1sqeA.t2k-thin90.a2m with 51 sequences, total weight= 34.8748 avg weight= 0.68382 37 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sqeA/info/1sqeA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sqeA/nostruct-align/1sqeA.t2k-thin90.a2m.gz, have 127259 columns in 540 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pgs/nostruct-align/1pgs.t2k-thin90.a2m.gz
# 1pgs.t2k-thin90.a2m with 3 sequences, total weight= 3 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.967101 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pgs/info/1pgs.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pgs/nostruct-align/1pgs.t2k-thin90.a2m.gz, have 127570 columns in 541 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jb3A/nostruct-align/1jb3A.t2k-thin90.a2m.gz
# 1jb3A.t2k-thin90.a2m with 2 sequences, total weight= 1.89548 avg weight= 0.947741 6 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jb3A/info/1jb3A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jb3A/nostruct-align/1jb3A.t2k-thin90.a2m.gz, have 127697 columns in 542 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k07A/nostruct-align/1k07A.t2k-thin90.a2m.gz
# 1k07A.t2k-thin90.a2m with 352 sequences, total weight= 352 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.983583 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k07A/info/1k07A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k07A/nostruct-align/1k07A.t2k-thin90.a2m.gz, have 127959 columns in 543 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vhqA/nostruct-align/1vhqA.t2k-thin90.a2m.gz
# 1vhqA.t2k-thin90.a2m with 87 sequences, total weight= 52.0605 avg weight= 0.598396 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vhqA/info/1vhqA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vhqA/nostruct-align/1vhqA.t2k-thin90.a2m.gz, have 128176 columns in 544 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xkpB/nostruct-align/1xkpB.t2k-thin90.a2m.gz
# 1xkpB.t2k-thin90.a2m with 9 sequences, total weight= 4.9157 avg weight= 0.546189 16 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xkpB/info/1xkpB.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1xkpB/nostruct-align/1xkpB.t2k-thin90.a2m.gz, have 128297 columns in 545 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nkpA/nostruct-align/1nkpA.t2k-thin90.a2m.gz
# 1nkpA.t2k-thin90.a2m with 355 sequences, total weight= 185.543 avg weight= 0.522658 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3022 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nkpA/info/1nkpA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nkpA/nostruct-align/1nkpA.t2k-thin90.a2m.gz, have 128385 columns in 546 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1od3A/nostruct-align/1od3A.t2k-thin90.a2m.gz
# 1od3A.t2k-thin90.a2m with 82 sequences, total weight= 55.7222 avg weight= 0.679539 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1od3A/info/1od3A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1od3A/nostruct-align/1od3A.t2k-thin90.a2m.gz, have 128516 columns in 547 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xjuA/nostruct-align/1xjuA.t2k-thin90.a2m.gz
# 1xjuA.t2k-thin90.a2m with 64 sequences, total weight= 27.2483 avg weight= 0.425754 31 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xjuA/info/1xjuA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1xjuA/nostruct-align/1xjuA.t2k-thin90.a2m.gz, have 128672 columns in 548 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2b/2biqA/nostruct-align/2biqA.t2k-thin90.a2m.gz
# 2biqA.t2k-thin90.a2m with 58 sequences, total weight= 7.48603 avg weight= 0.129069 22 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2b/2biqA/info/2biqA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/2b/2biqA/nostruct-align/2biqA.t2k-thin90.a2m.gz, have 128857 columns in 549 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vyiA/nostruct-align/1vyiA.t2k-thin90.a2m.gz
# 1vyiA.t2k-thin90.a2m with 12 sequences, total weight= 2.52171 avg weight= 0.210143 11 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vyiA/info/1vyiA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vyiA/nostruct-align/1vyiA.t2k-thin90.a2m.gz, have 128968 columns in 550 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iw0A/nostruct-align/1iw0A.t2k-thin90.a2m.gz
# 1iw0A.t2k-thin90.a2m with 51 sequences, total weight= 23.7458 avg weight= 0.465604 37 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iw0A/info/1iw0A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1iw0A/nostruct-align/1iw0A.t2k-thin90.a2m.gz, have 129175 columns in 551 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e1hB/nostruct-align/1e1hB.t2k-thin90.a2m.gz
# 1e1hB.t2k-thin90.a2m with 9 sequences, total weight= 5.82279 avg weight= 0.646976 20 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e1hB/info/1e1hB.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e1hB/nostruct-align/1e1hB.t2k-thin90.a2m.gz, have 129339 columns in 552 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iibA/nostruct-align/1iibA.t2k-thin90.a2m.gz
# 1iibA.t2k-thin90.a2m with 60 sequences, total weight= 14.1053 avg weight= 0.235088 34 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iibA/info/1iibA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1iibA/nostruct-align/1iibA.t2k-thin90.a2m.gz, have 129442 columns in 553 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dcs/nostruct-align/1dcs.t2k-thin90.a2m.gz
# 1dcs.t2k-thin90.a2m with 289 sequences, total weight= 118.987 avg weight= 0.41172 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30242 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dcs/info/1dcs.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dcs/nostruct-align/1dcs.t2k-thin90.a2m.gz, have 129721 columns in 554 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tuaA/nostruct-align/1tuaA.t2k-thin90.a2m.gz
# 1tuaA.t2k-thin90.a2m with 163 sequences, total weight= 163 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26694 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tuaA/info/1tuaA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tuaA/nostruct-align/1tuaA.t2k-thin90.a2m.gz, have 129910 columns in 555 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eu1A/nostruct-align/1eu1A.t2k-thin90.a2m.gz
# 1eu1A.t2k-thin90.a2m with 222 sequences, total weight= 222 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15077 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eu1A/info/1eu1A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1eu1A/nostruct-align/1eu1A.t2k-thin90.a2m.gz, have 130677 columns in 556 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s1fA/nostruct-align/1s1fA.t2k-thin90.a2m.gz
# 1s1fA.t2k-thin90.a2m with 1978 sequences, total weight= 1978 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.06833 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s1fA/info/1s1fA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1s/1s1fA/nostruct-align/1s1fA.t2k-thin90.a2m.gz, have 131074 columns in 557 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sfdA/nostruct-align/1sfdA.t2k-thin90.a2m.gz
# 1sfdA.t2k-thin90.a2m with 159 sequences, total weight= 136.379 avg weight= 0.857728 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sfdA/info/1sfdA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sfdA/nostruct-align/1sfdA.t2k-thin90.a2m.gz, have 131179 columns in 558 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kr7A/nostruct-align/1kr7A.t2k-thin90.a2m.gz
# 1kr7A.t2k-thin90.a2m with 95 sequences, total weight= 64.1473 avg weight= 0.675235 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kr7A/info/1kr7A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kr7A/nostruct-align/1kr7A.t2k-thin90.a2m.gz, have 131289 columns in 559 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hx6A/nostruct-align/1hx6A.t2k-thin90.a2m.gz
# 1hx6A.t2k-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.583138 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hx6A/info/1hx6A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hx6A/nostruct-align/1hx6A.t2k-thin90.a2m.gz, have 131659 columns in 560 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i12A/nostruct-align/1i12A.t2k-thin90.a2m.gz
# 1i12A.t2k-thin90.a2m with 378 sequences, total weight= 378 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.898215 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i12A/info/1i12A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i12A/nostruct-align/1i12A.t2k-thin90.a2m.gz, have 131813 columns in 561 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1szhA/nostruct-align/1szhA.t2k-thin90.a2m.gz
# 1szhA.t2k-thin90.a2m with 4 sequences, total weight= 3.48601 avg weight= 0.871503 11 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1szhA/info/1szhA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1s/1szhA/nostruct-align/1szhA.t2k-thin90.a2m.gz, have 131960 columns in 562 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lqaA/nostruct-align/1lqaA.t2k-thin90.a2m.gz
# 1lqaA.t2k-thin90.a2m with 830 sequences, total weight= 830 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25428 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lqaA/info/1lqaA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lqaA/nostruct-align/1lqaA.t2k-thin90.a2m.gz, have 132306 columns in 563 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pcfA/nostruct-align/1pcfA.t2k-thin90.a2m.gz
# 1pcfA.t2k-thin90.a2m with 19 sequences, total weight= 8.83828 avg weight= 0.465173 22 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pcfA/info/1pcfA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pcfA/nostruct-align/1pcfA.t2k-thin90.a2m.gz, have 132372 columns in 564 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d3vA/nostruct-align/1d3vA.t2k-thin90.a2m.gz
# 1d3vA.t2k-thin90.a2m with 186 sequences, total weight= 186 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28987 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d3vA/info/1d3vA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1d/1d3vA/nostruct-align/1d3vA.t2k-thin90.a2m.gz, have 132680 columns in 565 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eyhA/nostruct-align/1eyhA.t2k-thin90.a2m.gz
# 1eyhA.t2k-thin90.a2m with 44 sequences, total weight= 23.6959 avg weight= 0.538543 34 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eyhA/info/1eyhA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1eyhA/nostruct-align/1eyhA.t2k-thin90.a2m.gz, have 132824 columns in 566 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1aqzA/nostruct-align/1aqzA.t2k-thin90.a2m.gz
# 1aqzA.t2k-thin90.a2m with 3 sequences, total weight= 1.87734 avg weight= 0.62578 7 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1aqzA/info/1aqzA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1a/1aqzA/nostruct-align/1aqzA.t2k-thin90.a2m.gz, have 132966 columns in 567 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k94A/nostruct-align/1k94A.t2k-thin90.a2m.gz
# 1k94A.t2k-thin90.a2m with 405 sequences, total weight= 377.516 avg weight= 0.932139 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3007 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k94A/info/1k94A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k94A/nostruct-align/1k94A.t2k-thin90.a2m.gz, have 133131 columns in 568 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k7jA/nostruct-align/1k7jA.t2k-thin90.a2m.gz
# 1k7jA.t2k-thin90.a2m with 225 sequences, total weight= 70.8579 avg weight= 0.314924 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30089 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k7jA/info/1k7jA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k7jA/nostruct-align/1k7jA.t2k-thin90.a2m.gz, have 133337 columns in 569 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gqzA/nostruct-align/1gqzA.t2k-thin90.a2m.gz
# 1gqzA.t2k-thin90.a2m with 100 sequences, total weight= 34.3972 avg weight= 0.343972 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gqzA/info/1gqzA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gqzA/nostruct-align/1gqzA.t2k-thin90.a2m.gz, have 133611 columns in 570 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jakA/nostruct-align/1jakA.t2k-thin90.a2m.gz
# 1jakA.t2k-thin90.a2m with 125 sequences, total weight= 125 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20989 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jakA/info/1jakA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jakA/nostruct-align/1jakA.t2k-thin90.a2m.gz, have 134110 columns in 571 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gxuA/nostruct-align/1gxuA.t2k-thin90.a2m.gz
# 1gxuA.t2k-thin90.a2m with 144 sequences, total weight= 36.5378 avg weight= 0.253735 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gxuA/info/1gxuA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gxuA/nostruct-align/1gxuA.t2k-thin90.a2m.gz, have 134198 columns in 572 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v7zA/nostruct-align/1v7zA.t2k-thin90.a2m.gz
# 1v7zA.t2k-thin90.a2m with 58 sequences, total weight= 56.6217 avg weight= 0.976237 33 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v7zA/info/1v7zA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v7zA/nostruct-align/1v7zA.t2k-thin90.a2m.gz, have 134455 columns in 573 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jixA/nostruct-align/1jixA.t2k-thin90.a2m.gz
# 1jixA.t2k-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.577944 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jixA/info/1jixA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jixA/nostruct-align/1jixA.t2k-thin90.a2m.gz, have 134806 columns in 574 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v37A/nostruct-align/1v37A.t2k-thin90.a2m.gz
# 1v37A.t2k-thin90.a2m with 627 sequences, total weight= 627 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29491 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v37A/info/1v37A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v37A/nostruct-align/1v37A.t2k-thin90.a2m.gz, have 134977 columns in 575 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lbu/nostruct-align/1lbu.t2k-thin90.a2m.gz
# 1lbu.t2k-thin90.a2m with 185 sequences, total weight= 185 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2035 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lbu/info/1lbu.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lbu/nostruct-align/1lbu.t2k-thin90.a2m.gz, have 135190 columns in 576 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qd1A/nostruct-align/1qd1A.t2k-thin90.a2m.gz
# 1qd1A.t2k-thin90.a2m with 21 sequences, total weight= 6.92716 avg weight= 0.329865 19 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qd1A/info/1qd1A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qd1A/nostruct-align/1qd1A.t2k-thin90.a2m.gz, have 135509 columns in 577 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ezwA/nostruct-align/1ezwA.t2k-thin90.a2m.gz
# 1ezwA.t2k-thin90.a2m with 320 sequences, total weight= 320 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07756 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ezwA/info/1ezwA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1ezwA/nostruct-align/1ezwA.t2k-thin90.a2m.gz, have 135856 columns in 578 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t6uA/nostruct-align/1t6uA.t2k-thin90.a2m.gz
# 1t6uA.t2k-thin90.a2m with 8 sequences, total weight= 3.01376 avg weight= 0.376719 12 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t6uA/info/1t6uA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t6uA/nostruct-align/1t6uA.t2k-thin90.a2m.gz, have 135973 columns in 579 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ekqA/nostruct-align/1ekqA.t2k-thin90.a2m.gz
# 1ekqA.t2k-thin90.a2m with 145 sequences, total weight= 136.131 avg weight= 0.938834 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ekqA/info/1ekqA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1ekqA/nostruct-align/1ekqA.t2k-thin90.a2m.gz, have 136227 columns in 580 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kxoA/nostruct-align/1kxoA.t2k-thin90.a2m.gz
# 1kxoA.t2k-thin90.a2m with 57 sequences, total weight= 57 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19253 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kxoA/info/1kxoA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kxoA/nostruct-align/1kxoA.t2k-thin90.a2m.gz, have 136392 columns in 581 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lriA/nostruct-align/1lriA.t2k-thin90.a2m.gz
# 1lriA.t2k-thin90.a2m with 24 sequences, total weight= 4.99884 avg weight= 0.208285 20 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lriA/info/1lriA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lriA/nostruct-align/1lriA.t2k-thin90.a2m.gz, have 136490 columns in 582 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lvmA/nostruct-align/1lvmA.t2k-thin90.a2m.gz
# 1lvmA.t2k-thin90.a2m with 51 sequences, total weight= 16.1522 avg weight= 0.31671 32 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lvmA/info/1lvmA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lvmA/nostruct-align/1lvmA.t2k-thin90.a2m.gz, have 136719 columns in 583 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1ta8A/nostruct-align/1ta8A.t2k-thin90.a2m.gz
# 1ta8A.t2k-thin90.a2m with 216 sequences, total weight= 23.9369 avg weight= 0.110819 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1ta8A/info/1ta8A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1ta8A/nostruct-align/1ta8A.t2k-thin90.a2m.gz, have 137032 columns in 584 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gwyA/nostruct-align/1gwyA.t2k-thin90.a2m.gz
# 1gwyA.t2k-thin90.a2m with 7 sequences, total weight= 2.85776 avg weight= 0.408252 11 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gwyA/info/1gwyA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gwyA/nostruct-align/1gwyA.t2k-thin90.a2m.gz, have 137207 columns in 585 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dzkA/nostruct-align/1dzkA.t2k-thin90.a2m.gz
# 1dzkA.t2k-thin90.a2m with 84 sequences, total weight= 84 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27267 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dzkA/info/1dzkA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dzkA/nostruct-align/1dzkA.t2k-thin90.a2m.gz, have 137355 columns in 586 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wkcA/nostruct-align/1wkcA.t2k-thin90.a2m.gz
# 1wkcA.t2k-thin90.a2m with 225 sequences, total weight= 122.684 avg weight= 0.545264 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3018 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wkcA/info/1wkcA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1wkcA/nostruct-align/1wkcA.t2k-thin90.a2m.gz, have 137523 columns in 587 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d5tA/nostruct-align/1d5tA.t2k-thin90.a2m.gz
# 1d5tA.t2k-thin90.a2m with 179 sequences, total weight= 179 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.938387 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d5tA/info/1d5tA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1d/1d5tA/nostruct-align/1d5tA.t2k-thin90.a2m.gz, have 137956 columns in 588 chains
# command:CPU_time= 763.247 sec, elapsed time= 870.265 sec)
# command:# command:# Prefix for input files set to /cse/faculty/karplus/dna/predict-2nd/testing/training-data/
# command:# reading script from file dunbrack-30pc-1763-3.t2k-thin90-CB_burial_12_7
# Prefix for input files set to 
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/4u/4ubpA/nostruct-align/4ubpA.t2k-thin90.a2m.gz
# 4ubpA.t2k-thin90.a2m with 71 sequences, total weight= 4.6807 avg weight= 0.0659254 21 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/4u/4ubpA/info/4ubpA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/4u/4ubpA/nostruct-align/4ubpA.t2k-thin90.a2m.gz, have 100 columns in 1 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kngA/nostruct-align/1kngA.t2k-thin90.a2m.gz
# 1kngA.t2k-thin90.a2m with 430 sequences, total weight= 430 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20561 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kngA/info/1kngA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kngA/nostruct-align/1kngA.t2k-thin90.a2m.gz, have 244 columns in 2 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jnrA/nostruct-align/1jnrA.t2k-thin90.a2m.gz
# 1jnrA.t2k-thin90.a2m with 302 sequences, total weight= 302 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04936 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jnrA/info/1jnrA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jnrA/nostruct-align/1jnrA.t2k-thin90.a2m.gz, have 886 columns in 3 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1yc5A/nostruct-align/1yc5A.t2k-thin90.a2m.gz
# 1yc5A.t2k-thin90.a2m with 358 sequences, total weight= 110.824 avg weight= 0.309565 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3041 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1yc5A/info/1yc5A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1y/1yc5A/nostruct-align/1yc5A.t2k-thin90.a2m.gz, have 1120 columns in 4 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w2wB/nostruct-align/1w2wB.t2k-thin90.a2m.gz
# 1w2wB.t2k-thin90.a2m with 160 sequences, total weight= 53.8793 avg weight= 0.336746 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w2wB/info/1w2wB.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1w2wB/nostruct-align/1w2wB.t2k-thin90.a2m.gz, have 1311 columns in 5 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o3uA/nostruct-align/1o3uA.t2k-thin90.a2m.gz
# 1o3uA.t2k-thin90.a2m with 56 sequences, total weight= 48.753 avg weight= 0.870589 41 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o3uA/info/1o3uA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o3uA/nostruct-align/1o3uA.t2k-thin90.a2m.gz, have 1431 columns in 6 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e19A/nostruct-align/1e19A.t2k-thin90.a2m.gz
# 1e19A.t2k-thin90.a2m with 307 sequences, total weight= 192.645 avg weight= 0.627507 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30221 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e19A/info/1e19A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e19A/nostruct-align/1e19A.t2k-thin90.a2m.gz, have 1744 columns in 7 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1z/1z8kA/nostruct-align/1z8kA.t2k-thin90.a2m.gz
# 1z8kA.t2k-thin90.a2m with 11 sequences, total weight= 2.49273 avg weight= 0.226612 13 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1z/1z8kA/info/1z8kA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1z/1z8kA/nostruct-align/1z8kA.t2k-thin90.a2m.gz, have 1918 columns in 8 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mtpA/nostruct-align/1mtpA.t2k-thin90.a2m.gz
# 1mtpA.t2k-thin90.a2m with 321 sequences, total weight= 125.275 avg weight= 0.390265 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30423 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mtpA/info/1mtpA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mtpA/nostruct-align/1mtpA.t2k-thin90.a2m.gz, have 2238 columns in 9 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ijyA/nostruct-align/1ijyA.t2k-thin90.a2m.gz
# 1ijyA.t2k-thin90.a2m with 79 sequences, total weight= 30.2521 avg weight= 0.382938 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ijyA/info/1ijyA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1ijyA/nostruct-align/1ijyA.t2k-thin90.a2m.gz, have 2360 columns in 10 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pg4A/nostruct-align/1pg4A.t2k-thin90.a2m.gz
# 1pg4A.t2k-thin90.a2m with 1869 sequences, total weight= 1869 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10545 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pg4A/info/1pg4A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pg4A/nostruct-align/1pg4A.t2k-thin90.a2m.gz, have 2993 columns in 11 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f5nA/nostruct-align/1f5nA.t2k-thin90.a2m.gz
# 1f5nA.t2k-thin90.a2m with 62 sequences, total weight= 52.3417 avg weight= 0.844221 32 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f5nA/info/1f5nA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f5nA/nostruct-align/1f5nA.t2k-thin90.a2m.gz, have 3563 columns in 12 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1b5eA/nostruct-align/1b5eA.t2k-thin90.a2m.gz
# 1b5eA.t2k-thin90.a2m with 100 sequences, total weight= 34.1676 avg weight= 0.341676 35 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1b5eA/info/1b5eA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1b/1b5eA/nostruct-align/1b5eA.t2k-thin90.a2m.gz, have 3804 columns in 13 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gy7A/nostruct-align/1gy7A.t2k-thin90.a2m.gz
# 1gy7A.t2k-thin90.a2m with 63 sequences, total weight= 30.642 avg weight= 0.48638 42 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gy7A/info/1gy7A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gy7A/nostruct-align/1gy7A.t2k-thin90.a2m.gz, have 3925 columns in 14 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a3aA/nostruct-align/1a3aA.t2k-thin90.a2m.gz
# 1a3aA.t2k-thin90.a2m with 296 sequences, total weight= 296 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27317 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1a3aA/info/1a3aA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1a/1a3aA/nostruct-align/1a3aA.t2k-thin90.a2m.gz, have 4070 columns in 15 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w1oA/nostruct-align/1w1oA.t2k-thin90.a2m.gz
# 1w1oA.t2k-thin90.a2m with 650 sequences, total weight= 650 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.913531 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w1oA/info/1w1oA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1w1oA/nostruct-align/1w1oA.t2k-thin90.a2m.gz, have 4549 columns in 16 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gvdA/nostruct-align/1gvdA.t2k-thin90.a2m.gz
# 1gvdA.t2k-thin90.a2m with 560 sequences, total weight= 27.5104 avg weight= 0.0491257 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gvdA/info/1gvdA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gvdA/nostruct-align/1gvdA.t2k-thin90.a2m.gz, have 4601 columns in 17 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uj2A/nostruct-align/1uj2A.t2k-thin90.a2m.gz
# 1uj2A.t2k-thin90.a2m with 271 sequences, total weight= 271 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15725 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uj2A/info/1uj2A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uj2A/nostruct-align/1uj2A.t2k-thin90.a2m.gz, have 4814 columns in 18 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l7aA/nostruct-align/1l7aA.t2k-thin90.a2m.gz
# 1l7aA.t2k-thin90.a2m with 253 sequences, total weight= 253 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.843561 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l7aA/info/1l7aA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1l/1l7aA/nostruct-align/1l7aA.t2k-thin90.a2m.gz, have 5132 columns in 19 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kmtA/nostruct-align/1kmtA.t2k-thin90.a2m.gz
# 1kmtA.t2k-thin90.a2m with 28 sequences, total weight= 10.6984 avg weight= 0.382085 26 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kmtA/info/1kmtA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kmtA/nostruct-align/1kmtA.t2k-thin90.a2m.gz, have 5270 columns in 20 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2b/2bkxA/nostruct-align/2bkxA.t2k-thin90.a2m.gz
# 2bkxA.t2k-thin90.a2m with 281 sequences, total weight= 126.638 avg weight= 0.45067 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30322 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2b/2bkxA/info/2bkxA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/2b/2bkxA/nostruct-align/2bkxA.t2k-thin90.a2m.gz, have 5512 columns in 21 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1ji1A/nostruct-align/1ji1A.t2k-thin90.a2m.gz
# 1ji1A.t2k-thin90.a2m with 279 sequences, total weight= 279 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00014 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1ji1A/info/1ji1A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1ji1A/nostruct-align/1ji1A.t2k-thin90.a2m.gz, have 6149 columns in 22 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1luqA/nostruct-align/1luqA.t2k-thin90.a2m.gz
# 1luqA.t2k-thin90.a2m with 10 sequences, total weight= 8.57596 avg weight= 0.857596 18 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1luqA/info/1luqA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1l/1luqA/nostruct-align/1luqA.t2k-thin90.a2m.gz, have 6268 columns in 23 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h2wA/nostruct-align/1h2wA.t2k-thin90.a2m.gz
# 1h2wA.t2k-thin90.a2m with 248 sequences, total weight= 248 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.934819 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h2wA/info/1h2wA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h2wA/nostruct-align/1h2wA.t2k-thin90.a2m.gz, have 6978 columns in 24 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wvfA/nostruct-align/1wvfA.t2k-thin90.a2m.gz
# 1wvfA.t2k-thin90.a2m with 589 sequences, total weight= 589 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01831 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wvfA/info/1wvfA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1wvfA/nostruct-align/1wvfA.t2k-thin90.a2m.gz, have 7493 columns in 25 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h2bA/nostruct-align/1h2bA.t2k-thin90.a2m.gz
# 1h2bA.t2k-thin90.a2m with 1453 sequences, total weight= 1453 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22189 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h2bA/info/1h2bA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h2bA/nostruct-align/1h2bA.t2k-thin90.a2m.gz, have 7836 columns in 26 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bupA/nostruct-align/1bupA.t2k-thin90.a2m.gz
# 1bupA.t2k-thin90.a2m with 480 sequences, total weight= 110.412 avg weight= 0.230024 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30388 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bupA/info/1bupA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1b/1bupA/nostruct-align/1bupA.t2k-thin90.a2m.gz, have 8214 columns in 27 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lm4A/nostruct-align/1lm4A.t2k-thin90.a2m.gz
# 1lm4A.t2k-thin90.a2m with 177 sequences, total weight= 38.4885 avg weight= 0.217449 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lm4A/info/1lm4A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lm4A/nostruct-align/1lm4A.t2k-thin90.a2m.gz, have 8404 columns in 28 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gsoA/nostruct-align/1gsoA.t2k-thin90.a2m.gz
# 1gsoA.t2k-thin90.a2m with 304 sequences, total weight= 304 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26652 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gsoA/info/1gsoA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gsoA/nostruct-align/1gsoA.t2k-thin90.a2m.gz, have 8823 columns in 29 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d0cA/nostruct-align/1d0cA.t2k-thin90.a2m.gz
# 1d0cA.t2k-thin90.a2m with 34 sequences, total weight= 5.85016 avg weight= 0.172064 24 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d0cA/info/1d0cA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1d/1d0cA/nostruct-align/1d0cA.t2k-thin90.a2m.gz, have 9239 columns in 30 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oaa/nostruct-align/1oaa.t2k-thin90.a2m.gz
# 1oaa.t2k-thin90.a2m with 1115 sequences, total weight= 1115 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25857 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oaa/info/1oaa.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oaa/nostruct-align/1oaa.t2k-thin90.a2m.gz, have 9498 columns in 31 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gq6A/nostruct-align/1gq6A.t2k-thin90.a2m.gz
# 1gq6A.t2k-thin90.a2m with 183 sequences, total weight= 158.745 avg weight= 0.867458 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30038 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gq6A/info/1gq6A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gq6A/nostruct-align/1gq6A.t2k-thin90.a2m.gz, have 9793 columns in 32 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ubkL/nostruct-align/1ubkL.t2k-thin90.a2m.gz
# 1ubkL.t2k-thin90.a2m with 179 sequences, total weight= 179 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22171 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ubkL/info/1ubkL.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1ubkL/nostruct-align/1ubkL.t2k-thin90.a2m.gz, have 10327 columns in 33 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uekA/nostruct-align/1uekA.t2k-thin90.a2m.gz
# 1uekA.t2k-thin90.a2m with 179 sequences, total weight= 179 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25042 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uekA/info/1uekA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uekA/nostruct-align/1uekA.t2k-thin90.a2m.gz, have 10595 columns in 34 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wdvA/nostruct-align/1wdvA.t2k-thin90.a2m.gz
# 1wdvA.t2k-thin90.a2m with 275 sequences, total weight= 198.415 avg weight= 0.72151 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30221 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wdvA/info/1wdvA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1wdvA/nostruct-align/1wdvA.t2k-thin90.a2m.gz, have 10745 columns in 35 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kjlA/nostruct-align/1kjlA.t2k-thin90.a2m.gz
# 1kjlA.t2k-thin90.a2m with 277 sequences, total weight= 113.692 avg weight= 0.410442 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3011 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kjlA/info/1kjlA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kjlA/nostruct-align/1kjlA.t2k-thin90.a2m.gz, have 10883 columns in 36 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g2rA/nostruct-align/1g2rA.t2k-thin90.a2m.gz
# 1g2rA.t2k-thin90.a2m with 51 sequences, total weight= 19.3527 avg weight= 0.379464 34 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g2rA/info/1g2rA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1g2rA/nostruct-align/1g2rA.t2k-thin90.a2m.gz, have 10977 columns in 37 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s7kA/nostruct-align/1s7kA.t2k-thin90.a2m.gz
# 1s7kA.t2k-thin90.a2m with 562 sequences, total weight= 562 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.06934 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s7kA/info/1s7kA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1s/1s7kA/nostruct-align/1s7kA.t2k-thin90.a2m.gz, have 11135 columns in 38 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g5tA/nostruct-align/1g5tA.t2k-thin90.a2m.gz
# 1g5tA.t2k-thin90.a2m with 89 sequences, total weight= 14.727 avg weight= 0.165472 38 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g5tA/info/1g5tA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1g5tA/nostruct-align/1g5tA.t2k-thin90.a2m.gz, have 11292 columns in 39 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e0tA/nostruct-align/1e0tA.t2k-thin90.a2m.gz
# 1e0tA.t2k-thin90.a2m with 263 sequences, total weight= 27.365 avg weight= 0.104049 45 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e0tA/info/1e0tA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e0tA/nostruct-align/1e0tA.t2k-thin90.a2m.gz, have 11738 columns in 40 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p0hA/nostruct-align/1p0hA.t2k-thin90.a2m.gz
# 1p0hA.t2k-thin90.a2m with 272 sequences, total weight= 272 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05585 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p0hA/info/1p0hA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1p0hA/nostruct-align/1p0hA.t2k-thin90.a2m.gz, have 12028 columns in 41 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1molA/nostruct-align/1molA.t2k-thin90.a2m.gz
# 1molA.t2k-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.626348 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1molA/info/1molA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1molA/nostruct-align/1molA.t2k-thin90.a2m.gz, have 12122 columns in 42 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1osyA/nostruct-align/1osyA.t2k-thin90.a2m.gz
# 1osyA.t2k-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18135 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1osyA/info/1osyA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1osyA/nostruct-align/1osyA.t2k-thin90.a2m.gz, have 12236 columns in 43 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sbp/nostruct-align/1sbp.t2k-thin90.a2m.gz
# 1sbp.t2k-thin90.a2m with 167 sequences, total weight= 167 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14481 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sbp/info/1sbp.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sbp/nostruct-align/1sbp.t2k-thin90.a2m.gz, have 12545 columns in 44 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pvgA/nostruct-align/1pvgA.t2k-thin90.a2m.gz
# 1pvgA.t2k-thin90.a2m with 509 sequences, total weight= 31.6416 avg weight= 0.0621643 45 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pvgA/info/1pvgA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pvgA/nostruct-align/1pvgA.t2k-thin90.a2m.gz, have 12923 columns in 45 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1st9A/nostruct-align/1st9A.t2k-thin90.a2m.gz
# 1st9A.t2k-thin90.a2m with 1495 sequences, total weight= 1495 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17727 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1st9A/info/1st9A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1s/1st9A/nostruct-align/1st9A.t2k-thin90.a2m.gz, have 13060 columns in 46 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f1eA/nostruct-align/1f1eA.t2k-thin90.a2m.gz
# 1f1eA.t2k-thin90.a2m with 88 sequences, total weight= 29.1039 avg weight= 0.330726 25 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f1eA/info/1f1eA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f1eA/nostruct-align/1f1eA.t2k-thin90.a2m.gz, have 13211 columns in 47 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ikpA/nostruct-align/1ikpA.t2k-thin90.a2m.gz
# 1ikpA.t2k-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.624537 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ikpA/info/1ikpA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1ikpA/nostruct-align/1ikpA.t2k-thin90.a2m.gz, have 13810 columns in 48 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1swxA/nostruct-align/1swxA.t2k-thin90.a2m.gz
# 1swxA.t2k-thin90.a2m with 65 sequences, total weight= 40.7769 avg weight= 0.627338 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1swxA/info/1swxA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1s/1swxA/nostruct-align/1swxA.t2k-thin90.a2m.gz, have 14008 columns in 49 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uozA/nostruct-align/1uozA.t2k-thin90.a2m.gz
# 1uozA.t2k-thin90.a2m with 76 sequences, total weight= 19.4265 avg weight= 0.255611 36 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uozA/info/1uozA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uozA/nostruct-align/1uozA.t2k-thin90.a2m.gz, have 14308 columns in 50 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1id0A/nostruct-align/1id0A.t2k-thin90.a2m.gz
# 1id0A.t2k-thin90.a2m with 1012 sequences, total weight= 1012 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28812 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1id0A/info/1id0A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1id0A/nostruct-align/1id0A.t2k-thin90.a2m.gz, have 14454 columns in 51 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2m/2mcm/nostruct-align/2mcm.t2k-thin90.a2m.gz
# 2mcm.t2k-thin90.a2m with 5 sequences, total weight= 3.5941 avg weight= 0.718821 12 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2m/2mcm/info/2mcm.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/2m/2mcm/nostruct-align/2mcm.t2k-thin90.a2m.gz, have 14566 columns in 52 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a12A/nostruct-align/1a12A.t2k-thin90.a2m.gz
# 1a12A.t2k-thin90.a2m with 196 sequences, total weight= 196 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04671 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1a12A/info/1a12A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1a/1a12A/nostruct-align/1a12A.t2k-thin90.a2m.gz, have 14967 columns in 53 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k2xA/nostruct-align/1k2xA.t2k-thin90.a2m.gz
# 1k2xA.t2k-thin90.a2m with 73 sequences, total weight= 22.7572 avg weight= 0.311743 40 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k2xA/info/1k2xA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k2xA/nostruct-align/1k2xA.t2k-thin90.a2m.gz, have 15123 columns in 54 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jp4A/nostruct-align/1jp4A.t2k-thin90.a2m.gz
# 1jp4A.t2k-thin90.a2m with 324 sequences, total weight= 324 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22047 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jp4A/info/1jp4A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jp4A/nostruct-align/1jp4A.t2k-thin90.a2m.gz, have 15425 columns in 55 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sjyA/nostruct-align/1sjyA.t2k-thin90.a2m.gz
# 1sjyA.t2k-thin90.a2m with 1112 sequences, total weight= 1112 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14237 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sjyA/info/1sjyA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sjyA/nostruct-align/1sjyA.t2k-thin90.a2m.gz, have 15579 columns in 56 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nu4A/nostruct-align/1nu4A.t2k-thin90.a2m.gz
# 1nu4A.t2k-thin90.a2m with 1484 sequences, total weight= 1484 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24757 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nu4A/info/1nu4A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nu4A/nostruct-align/1nu4A.t2k-thin90.a2m.gz, have 15670 columns in 57 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j77A/nostruct-align/1j77A.t2k-thin90.a2m.gz
# 1j77A.t2k-thin90.a2m with 23 sequences, total weight= 18.1432 avg weight= 0.788833 23 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j77A/info/1j77A.stride-mixed.CB-burial-12-7
WARNING: skipping b, since it is lower case.
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j77A/nostruct-align/1j77A.t2k-thin90.a2m.gz, have 15869 columns in 58 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1btkA/nostruct-align/1btkA.t2k-thin90.a2m.gz
# 1btkA.t2k-thin90.a2m with 26 sequences, total weight= 17.5928 avg weight= 0.676647 25 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1btkA/info/1btkA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1b/1btkA/nostruct-align/1btkA.t2k-thin90.a2m.gz, have 16029 columns in 59 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kq1A/nostruct-align/1kq1A.t2k-thin90.a2m.gz
# 1kq1A.t2k-thin90.a2m with 31 sequences, total weight= 5.2299 avg weight= 0.168707 22 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kq1A/info/1kq1A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kq1A/nostruct-align/1kq1A.t2k-thin90.a2m.gz, have 16089 columns in 60 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1ktgA/nostruct-align/1ktgA.t2k-thin90.a2m.gz
# 1ktgA.t2k-thin90.a2m with 550 sequences, total weight= 550 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07396 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1ktgA/info/1ktgA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1ktgA/nostruct-align/1ktgA.t2k-thin90.a2m.gz, have 16226 columns in 61 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ockA/nostruct-align/1ockA.t2k-thin90.a2m.gz
# 1ockA.t2k-thin90.a2m with 339 sequences, total weight= 166.723 avg weight= 0.491807 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30467 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ockA/info/1ockA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1ockA/nostruct-align/1ockA.t2k-thin90.a2m.gz, have 16638 columns in 62 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nkgA/nostruct-align/1nkgA.t2k-thin90.a2m.gz
# 1nkgA.t2k-thin90.a2m with 24 sequences, total weight= 13.7257 avg weight= 0.571903 23 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nkgA/info/1nkgA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nkgA/nostruct-align/1nkgA.t2k-thin90.a2m.gz, have 17146 columns in 63 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1y80A/nostruct-align/1y80A.t2k-thin90.a2m.gz
# 1y80A.t2k-thin90.a2m with 269 sequences, total weight= 58.0594 avg weight= 0.215834 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30059 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1y80A/info/1y80A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1y/1y80A/nostruct-align/1y80A.t2k-thin90.a2m.gz, have 17271 columns in 64 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f60B/nostruct-align/1f60B.t2k-thin90.a2m.gz
# 1f60B.t2k-thin90.a2m with 59 sequences, total weight= 15.9349 avg weight= 0.270083 31 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f60B/info/1f60B.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f60B/nostruct-align/1f60B.t2k-thin90.a2m.gz, have 17361 columns in 65 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vcc/nostruct-align/1vcc.t2k-thin90.a2m.gz
# 1vcc.t2k-thin90.a2m with 11 sequences, total weight= 4.44338 avg weight= 0.403943 16 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vcc/info/1vcc.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vcc/nostruct-align/1vcc.t2k-thin90.a2m.gz, have 17438 columns in 66 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k3yA/nostruct-align/1k3yA.t2k-thin90.a2m.gz
# 1k3yA.t2k-thin90.a2m with 519 sequences, total weight= 519 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19881 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k3yA/info/1k3yA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k3yA/nostruct-align/1k3yA.t2k-thin90.a2m.gz, have 17659 columns in 67 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l6pA/nostruct-align/1l6pA.t2k-thin90.a2m.gz
# 1l6pA.t2k-thin90.a2m with 41 sequences, total weight= 14.8548 avg weight= 0.362312 36 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l6pA/info/1l6pA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1l/1l6pA/nostruct-align/1l6pA.t2k-thin90.a2m.gz, have 17780 columns in 68 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3n/3nul/nostruct-align/3nul.t2k-thin90.a2m.gz
# 3nul.t2k-thin90.a2m with 77 sequences, total weight= 22.2295 avg weight= 0.288695 38 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3n/3nul/info/3nul.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/3n/3nul/nostruct-align/3nul.t2k-thin90.a2m.gz, have 17910 columns in 69 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f2tB/nostruct-align/1f2tB.t2k-thin90.a2m.gz
# 1f2tB.t2k-thin90.a2m with 7351 sequences, total weight= 7351 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25738 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f2tB/info/1f2tB.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f2tB/nostruct-align/1f2tB.t2k-thin90.a2m.gz, have 18053 columns in 70 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1u8vA/nostruct-align/1u8vA.t2k-thin90.a2m.gz
# 1u8vA.t2k-thin90.a2m with 59 sequences, total weight= 34.0455 avg weight= 0.577043 36 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1u8vA/info/1u8vA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1u8vA/nostruct-align/1u8vA.t2k-thin90.a2m.gz, have 18543 columns in 71 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qj4A/nostruct-align/1qj4A.t2k-thin90.a2m.gz
# 1qj4A.t2k-thin90.a2m with 285 sequences, total weight= 285 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.923954 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qj4A/info/1qj4A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qj4A/nostruct-align/1qj4A.t2k-thin90.a2m.gz, have 18799 columns in 72 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r5mA/nostruct-align/1r5mA.t2k-thin90.a2m.gz
# 1r5mA.t2k-thin90.a2m with 3821 sequences, total weight= 3821 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.864543 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r5mA/info/1r5mA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r5mA/nostruct-align/1r5mA.t2k-thin90.a2m.gz, have 19150 columns in 73 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o8bA/nostruct-align/1o8bA.t2k-thin90.a2m.gz
# 1o8bA.t2k-thin90.a2m with 98 sequences, total weight= 14.6603 avg weight= 0.149595 36 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o8bA/info/1o8bA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o8bA/nostruct-align/1o8bA.t2k-thin90.a2m.gz, have 19318 columns in 74 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fg7A/nostruct-align/1fg7A.t2k-thin90.a2m.gz
# 1fg7A.t2k-thin90.a2m with 557 sequences, total weight= 557 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.06657 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fg7A/info/1fg7A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fg7A/nostruct-align/1fg7A.t2k-thin90.a2m.gz, have 19672 columns in 75 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1x7dA/nostruct-align/1x7dA.t2k-thin90.a2m.gz
# 1x7dA.t2k-thin90.a2m with 154 sequences, total weight= 75.3106 avg weight= 0.48903 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1x7dA/info/1x7dA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1x7dA/nostruct-align/1x7dA.t2k-thin90.a2m.gz, have 20012 columns in 76 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j2rA/nostruct-align/1j2rA.t2k-thin90.a2m.gz
# 1j2rA.t2k-thin90.a2m with 314 sequences, total weight= 314 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1989 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j2rA/info/1j2rA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j2rA/nostruct-align/1j2rA.t2k-thin90.a2m.gz, have 20200 columns in 77 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pbyA/nostruct-align/1pbyA.t2k-thin90.a2m.gz
# 1pbyA.t2k-thin90.a2m with 4 sequences, total weight= 3.71609 avg weight= 0.929023 11 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pbyA/info/1pbyA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pbyA/nostruct-align/1pbyA.t2k-thin90.a2m.gz, have 20689 columns in 78 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k5cA/nostruct-align/1k5cA.t2k-thin90.a2m.gz
# 1k5cA.t2k-thin90.a2m with 243 sequences, total weight= 71.7 avg weight= 0.295062 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.301 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k5cA/info/1k5cA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k5cA/nostruct-align/1k5cA.t2k-thin90.a2m.gz, have 21022 columns in 79 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dj0A/nostruct-align/1dj0A.t2k-thin90.a2m.gz
# 1dj0A.t2k-thin90.a2m with 177 sequences, total weight= 65.0734 avg weight= 0.367646 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30042 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dj0A/info/1dj0A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dj0A/nostruct-align/1dj0A.t2k-thin90.a2m.gz, have 21286 columns in 80 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wpnA/nostruct-align/1wpnA.t2k-thin90.a2m.gz
# 1wpnA.t2k-thin90.a2m with 197 sequences, total weight= 197 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24157 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wpnA/info/1wpnA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1wpnA/nostruct-align/1wpnA.t2k-thin90.a2m.gz, have 21473 columns in 81 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q25A/nostruct-align/1q25A.t2k-thin90.a2m.gz
# 1q25A.t2k-thin90.a2m with 76 sequences, total weight= 27.5979 avg weight= 0.363131 34 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q25A/info/1q25A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q25A/nostruct-align/1q25A.t2k-thin90.a2m.gz, have 21901 columns in 82 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sz7A/nostruct-align/1sz7A.t2k-thin90.a2m.gz
# 1sz7A.t2k-thin90.a2m with 67 sequences, total weight= 32.6067 avg weight= 0.486667 41 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sz7A/info/1sz7A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sz7A/nostruct-align/1sz7A.t2k-thin90.a2m.gz, have 22060 columns in 83 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hztA/nostruct-align/1hztA.t2k-thin90.a2m.gz
# 1hztA.t2k-thin90.a2m with 247 sequences, total weight= 173.95 avg weight= 0.704251 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30035 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hztA/info/1hztA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hztA/nostruct-align/1hztA.t2k-thin90.a2m.gz, have 22213 columns in 84 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qopB/nostruct-align/1qopB.t2k-thin90.a2m.gz
# 1qopB.t2k-thin90.a2m with 292 sequences, total weight= 153.228 avg weight= 0.524752 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3017 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qopB/info/1qopB.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qopB/nostruct-align/1qopB.t2k-thin90.a2m.gz, have 22603 columns in 85 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l3lA/nostruct-align/1l3lA.t2k-thin90.a2m.gz
# 1l3lA.t2k-thin90.a2m with 316 sequences, total weight= 316 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08635 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l3lA/info/1l3lA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1l/1l3lA/nostruct-align/1l3lA.t2k-thin90.a2m.gz, have 22836 columns in 86 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ohlA/nostruct-align/1ohlA.t2k-thin90.a2m.gz
# 1ohlA.t2k-thin90.a2m with 117 sequences, total weight= 8.48187 avg weight= 0.0724946 31 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ohlA/info/1ohlA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1ohlA/nostruct-align/1ohlA.t2k-thin90.a2m.gz, have 23176 columns in 87 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oygA/nostruct-align/1oygA.t2k-thin90.a2m.gz
# 1oygA.t2k-thin90.a2m with 26 sequences, total weight= 11.4332 avg weight= 0.439738 26 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oygA/info/1oygA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oygA/nostruct-align/1oygA.t2k-thin90.a2m.gz, have 23616 columns in 88 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1khcA/nostruct-align/1khcA.t2k-thin90.a2m.gz
# 1khcA.t2k-thin90.a2m with 61 sequences, total weight= 61 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16088 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1khcA/info/1khcA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1khcA/nostruct-align/1khcA.t2k-thin90.a2m.gz, have 23751 columns in 89 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ugpA/nostruct-align/1ugpA.t2k-thin90.a2m.gz
# 1ugpA.t2k-thin90.a2m with 28 sequences, total weight= 6.99964 avg weight= 0.249987 22 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ugpA/info/1ugpA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1ugpA/nostruct-align/1ugpA.t2k-thin90.a2m.gz, have 23954 columns in 90 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rmwA/nostruct-align/1rmwA.t2k-thin90.a2m.gz
# 1rmwA.t2k-thin90.a2m with 34 sequences, total weight= 25.464 avg weight= 0.748941 26 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rmwA/info/1rmwA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rmwA/nostruct-align/1rmwA.t2k-thin90.a2m.gz, have 24165 columns in 91 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m93B/nostruct-align/1m93B.t2k-thin90.a2m.gz
# 1m93B.t2k-thin90.a2m with 375 sequences, total weight= 141.861 avg weight= 0.378295 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30439 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m93B/info/1m93B.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m93B/nostruct-align/1m93B.t2k-thin90.a2m.gz, have 24410 columns in 92 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vr7A/nostruct-align/1vr7A.t2k-thin90.a2m.gz
# 1vr7A.t2k-thin90.a2m with 76 sequences, total weight= 16.3894 avg weight= 0.21565 39 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vr7A/info/1vr7A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vr7A/nostruct-align/1vr7A.t2k-thin90.a2m.gz, have 24530 columns in 93 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1ve1A/nostruct-align/1ve1A.t2k-thin90.a2m.gz
# 1ve1A.t2k-thin90.a2m with 1087 sequences, total weight= 367.527 avg weight= 0.338111 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31676 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1ve1A/info/1ve1A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1ve1A/nostruct-align/1ve1A.t2k-thin90.a2m.gz, have 24832 columns in 94 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1twyA/nostruct-align/1twyA.t2k-thin90.a2m.gz
# 1twyA.t2k-thin90.a2m with 382 sequences, total weight= 382 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15078 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1twyA/info/1twyA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1twyA/nostruct-align/1twyA.t2k-thin90.a2m.gz, have 25081 columns in 95 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d4tA/nostruct-align/1d4tA.t2k-thin90.a2m.gz
# 1d4tA.t2k-thin90.a2m with 163 sequences, total weight= 67.2286 avg weight= 0.412446 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30064 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d4tA/info/1d4tA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1d/1d4tA/nostruct-align/1d4tA.t2k-thin90.a2m.gz, have 25185 columns in 96 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2p/2pth/nostruct-align/2pth.t2k-thin90.a2m.gz
# 2pth.t2k-thin90.a2m with 134 sequences, total weight= 19.7092 avg weight= 0.147084 45 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2p/2pth/info/2pth.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/2p/2pth/nostruct-align/2pth.t2k-thin90.a2m.gz, have 25378 columns in 97 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sg6A/nostruct-align/1sg6A.t2k-thin90.a2m.gz
# 1sg6A.t2k-thin90.a2m with 279 sequences, total weight= 255.168 avg weight= 0.914579 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30048 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sg6A/info/1sg6A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sg6A/nostruct-align/1sg6A.t2k-thin90.a2m.gz, have 25755 columns in 98 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gxyA/nostruct-align/1gxyA.t2k-thin90.a2m.gz
# 1gxyA.t2k-thin90.a2m with 36 sequences, total weight= 10.5749 avg weight= 0.293748 26 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gxyA/info/1gxyA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gxyA/nostruct-align/1gxyA.t2k-thin90.a2m.gz, have 25978 columns in 99 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hh8A/nostruct-align/1hh8A.t2k-thin90.a2m.gz
# 1hh8A.t2k-thin90.a2m with 266 sequences, total weight= 266 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.06393 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hh8A/info/1hh8A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hh8A/nostruct-align/1hh8A.t2k-thin90.a2m.gz, have 26170 columns in 100 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1df4A/nostruct-align/1df4A.t2k-thin90.a2m.gz
# 1df4A.t2k-thin90.a2m with 504 sequences, total weight= 8.7245 avg weight= 0.0173105 31 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1df4A/info/1df4A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1d/1df4A/nostruct-align/1df4A.t2k-thin90.a2m.gz, have 26227 columns in 101 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kyhA/nostruct-align/1kyhA.t2k-thin90.a2m.gz
# 1kyhA.t2k-thin90.a2m with 178 sequences, total weight= 178 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28251 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kyhA/info/1kyhA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kyhA/nostruct-align/1kyhA.t2k-thin90.a2m.gz, have 26495 columns in 102 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1u84A/nostruct-align/1u84A.t2k-thin90.a2m.gz
# 1u84A.t2k-thin90.a2m with 4 sequences, total weight= 3.51124 avg weight= 0.877809 12 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1u84A/info/1u84A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1u84A/nostruct-align/1u84A.t2k-thin90.a2m.gz, have 26576 columns in 103 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nu0A/nostruct-align/1nu0A.t2k-thin90.a2m.gz
# 1nu0A.t2k-thin90.a2m with 136 sequences, total weight= 32.5669 avg weight= 0.239462 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nu0A/info/1nu0A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nu0A/nostruct-align/1nu0A.t2k-thin90.a2m.gz, have 26707 columns in 104 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dciA/nostruct-align/1dciA.t2k-thin90.a2m.gz
# 1dciA.t2k-thin90.a2m with 385 sequences, total weight= 385 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23302 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dciA/info/1dciA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dciA/nostruct-align/1dciA.t2k-thin90.a2m.gz, have 26982 columns in 105 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xdnA/nostruct-align/1xdnA.t2k-thin90.a2m.gz
# 1xdnA.t2k-thin90.a2m with 10 sequences, total weight= 5.39145 avg weight= 0.539145 16 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xdnA/info/1xdnA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1xdnA/nostruct-align/1xdnA.t2k-thin90.a2m.gz, have 27247 columns in 106 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tr9A/nostruct-align/1tr9A.t2k-thin90.a2m.gz
# 1tr9A.t2k-thin90.a2m with 368 sequences, total weight= 159.662 avg weight= 0.433864 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30303 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tr9A/info/1tr9A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tr9A/nostruct-align/1tr9A.t2k-thin90.a2m.gz, have 27577 columns in 107 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k6kA/nostruct-align/1k6kA.t2k-thin90.a2m.gz
# 1k6kA.t2k-thin90.a2m with 111 sequences, total weight= 92.5466 avg weight= 0.833753 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k6kA/info/1k6kA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k6kA/nostruct-align/1k6kA.t2k-thin90.a2m.gz, have 27719 columns in 108 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h4rA/nostruct-align/1h4rA.t2k-thin90.a2m.gz
# 1h4rA.t2k-thin90.a2m with 124 sequences, total weight= 124 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21333 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h4rA/info/1h4rA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h4rA/nostruct-align/1h4rA.t2k-thin90.a2m.gz, have 28013 columns in 109 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1ryiA/nostruct-align/1ryiA.t2k-thin90.a2m.gz
# 1ryiA.t2k-thin90.a2m with 1396 sequences, total weight= 1396 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.916281 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1ryiA/info/1ryiA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1ryiA/nostruct-align/1ryiA.t2k-thin90.a2m.gz, have 28377 columns in 110 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j30A/nostruct-align/1j30A.t2k-thin90.a2m.gz
# 1j30A.t2k-thin90.a2m with 96 sequences, total weight= 94.0422 avg weight= 0.979607 43 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j30A/info/1j30A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j30A/nostruct-align/1j30A.t2k-thin90.a2m.gz, have 28518 columns in 111 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ezgA/nostruct-align/1ezgA.t2k-thin90.a2m.gz
# 1ezgA.t2k-thin90.a2m with 12 sequences, total weight= 2.49355 avg weight= 0.207796 12 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ezgA/info/1ezgA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1ezgA/nostruct-align/1ezgA.t2k-thin90.a2m.gz, have 28600 columns in 112 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nzjA/nostruct-align/1nzjA.t2k-thin90.a2m.gz
# 1nzjA.t2k-thin90.a2m with 671 sequences, total weight= 44.1933 avg weight= 0.0658619 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nzjA/info/1nzjA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nzjA/nostruct-align/1nzjA.t2k-thin90.a2m.gz, have 28873 columns in 113 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n62C/nostruct-align/1n62C.t2k-thin90.a2m.gz
# 1n62C.t2k-thin90.a2m with 161 sequences, total weight= 79.1877 avg weight= 0.491849 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30065 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n62C/info/1n62C.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n62C/nostruct-align/1n62C.t2k-thin90.a2m.gz, have 29159 columns in 114 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t3iA/nostruct-align/1t3iA.t2k-thin90.a2m.gz
# 1t3iA.t2k-thin90.a2m with 1418 sequences, total weight= 1418 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.975076 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t3iA/info/1t3iA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t3iA/nostruct-align/1t3iA.t2k-thin90.a2m.gz, have 29565 columns in 115 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tzvA/nostruct-align/1tzvA.t2k-thin90.a2m.gz
# 1tzvA.t2k-thin90.a2m with 233 sequences, total weight= 144.664 avg weight= 0.620875 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30038 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tzvA/info/1tzvA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tzvA/nostruct-align/1tzvA.t2k-thin90.a2m.gz, have 29706 columns in 116 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nuyA/nostruct-align/1nuyA.t2k-thin90.a2m.gz
# 1nuyA.t2k-thin90.a2m with 145 sequences, total weight= 50.0993 avg weight= 0.345512 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nuyA/info/1nuyA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nuyA/nostruct-align/1nuyA.t2k-thin90.a2m.gz, have 30034 columns in 117 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xocA/nostruct-align/1xocA.t2k-thin90.a2m.gz
# 1xocA.t2k-thin90.a2m with 1132 sequences, total weight= 1132 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04725 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xocA/info/1xocA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1xocA/nostruct-align/1xocA.t2k-thin90.a2m.gz, have 30538 columns in 118 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k0mA/nostruct-align/1k0mA.t2k-thin90.a2m.gz
# 1k0mA.t2k-thin90.a2m with 171 sequences, total weight= 171 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14141 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k0mA/info/1k0mA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k0mA/nostruct-align/1k0mA.t2k-thin90.a2m.gz, have 30773 columns in 119 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v5dA/nostruct-align/1v5dA.t2k-thin90.a2m.gz
# 1v5dA.t2k-thin90.a2m with 49 sequences, total weight= 49 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.244 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v5dA/info/1v5dA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v5dA/nostruct-align/1v5dA.t2k-thin90.a2m.gz, have 31159 columns in 120 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ekgA/nostruct-align/1ekgA.t2k-thin90.a2m.gz
# 1ekgA.t2k-thin90.a2m with 42 sequences, total weight= 17.2847 avg weight= 0.411541 31 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ekgA/info/1ekgA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1ekgA/nostruct-align/1ekgA.t2k-thin90.a2m.gz, have 31278 columns in 121 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v33A/nostruct-align/1v33A.t2k-thin90.a2m.gz
# 1v33A.t2k-thin90.a2m with 50 sequences, total weight= 50 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28297 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v33A/info/1v33A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v33A/nostruct-align/1v33A.t2k-thin90.a2m.gz, have 31624 columns in 122 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1es5A/nostruct-align/1es5A.t2k-thin90.a2m.gz
# 1es5A.t2k-thin90.a2m with 105 sequences, total weight= 67.6334 avg weight= 0.644128 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1es5A/info/1es5A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1es5A/nostruct-align/1es5A.t2k-thin90.a2m.gz, have 31884 columns in 123 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m7yA/nostruct-align/1m7yA.t2k-thin90.a2m.gz
# 1m7yA.t2k-thin90.a2m with 963 sequences, total weight= 963 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04436 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m7yA/info/1m7yA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m7yA/nostruct-align/1m7yA.t2k-thin90.a2m.gz, have 32308 columns in 124 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qauA/nostruct-align/1qauA.t2k-thin90.a2m.gz
# 1qauA.t2k-thin90.a2m with 372 sequences, total weight= 372 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24273 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qauA/info/1qauA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qauA/nostruct-align/1qauA.t2k-thin90.a2m.gz, have 32420 columns in 125 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vrmA/nostruct-align/1vrmA.t2k-thin90.a2m.gz
# 1vrmA.t2k-thin90.a2m with 159 sequences, total weight= 92.3718 avg weight= 0.580954 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vrmA/info/1vrmA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vrmA/nostruct-align/1vrmA.t2k-thin90.a2m.gz, have 32729 columns in 126 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1ne2A/nostruct-align/1ne2A.t2k-thin90.a2m.gz
# 1ne2A.t2k-thin90.a2m with 627 sequences, total weight= 627 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.948668 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1ne2A/info/1ne2A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1ne2A/nostruct-align/1ne2A.t2k-thin90.a2m.gz, have 32905 columns in 127 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e6cA/nostruct-align/1e6cA.t2k-thin90.a2m.gz
# 1e6cA.t2k-thin90.a2m with 229 sequences, total weight= 229 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21128 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e6cA/info/1e6cA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e6cA/nostruct-align/1e6cA.t2k-thin90.a2m.gz, have 33075 columns in 128 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ooyA/nostruct-align/1ooyA.t2k-thin90.a2m.gz
# 1ooyA.t2k-thin90.a2m with 251 sequences, total weight= 144.648 avg weight= 0.576287 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30038 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ooyA/info/1ooyA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1ooyA/nostruct-align/1ooyA.t2k-thin90.a2m.gz, have 33538 columns in 129 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ojrA/nostruct-align/1ojrA.t2k-thin90.a2m.gz
# 1ojrA.t2k-thin90.a2m with 53 sequences, total weight= 37.9759 avg weight= 0.716527 32 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ojrA/info/1ojrA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1ojrA/nostruct-align/1ojrA.t2k-thin90.a2m.gz, have 33812 columns in 130 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xauA/nostruct-align/1xauA.t2k-thin90.a2m.gz
# 1xauA.t2k-thin90.a2m with 3 sequences, total weight= 2.4316 avg weight= 0.810532 9 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xauA/info/1xauA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1xauA/nostruct-align/1xauA.t2k-thin90.a2m.gz, have 33916 columns in 131 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sbxA/nostruct-align/1sbxA.t2k-thin90.a2m.gz
# 1sbxA.t2k-thin90.a2m with 20 sequences, total weight= 7.29647 avg weight= 0.364824 22 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sbxA/info/1sbxA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sbxA/nostruct-align/1sbxA.t2k-thin90.a2m.gz, have 34022 columns in 132 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h4pA/nostruct-align/1h4pA.t2k-thin90.a2m.gz
# 1h4pA.t2k-thin90.a2m with 70 sequences, total weight= 70 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14687 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h4pA/info/1h4pA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h4pA/nostruct-align/1h4pA.t2k-thin90.a2m.gz, have 34430 columns in 133 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xs0A/nostruct-align/1xs0A.t2k-thin90.a2m.gz
# 1xs0A.t2k-thin90.a2m with 8 sequences, total weight= 5.99611 avg weight= 0.749514 12 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xs0A/info/1xs0A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1xs0A/nostruct-align/1xs0A.t2k-thin90.a2m.gz, have 34558 columns in 134 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sx5A/nostruct-align/1sx5A.t2k-thin90.a2m.gz
# 1sx5A.t2k-thin90.a2m with 3 sequences, total weight= 3 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13992 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sx5A/info/1sx5A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sx5A/nostruct-align/1sx5A.t2k-thin90.a2m.gz, have 34802 columns in 135 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qy1A/nostruct-align/1qy1A.t2k-thin90.a2m.gz
# 1qy1A.t2k-thin90.a2m with 125 sequences, total weight= 125 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13967 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qy1A/info/1qy1A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qy1A/nostruct-align/1qy1A.t2k-thin90.a2m.gz, have 34959 columns in 136 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2i/2igd/nostruct-align/2igd.t2k-thin90.a2m.gz
# 2igd.t2k-thin90.a2m with 9 sequences, total weight= 3.43718 avg weight= 0.381908 12 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2i/2igd/info/2igd.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/2i/2igd/nostruct-align/2igd.t2k-thin90.a2m.gz, have 35020 columns in 137 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lc0A/nostruct-align/1lc0A.t2k-thin90.a2m.gz
# 1lc0A.t2k-thin90.a2m with 271 sequences, total weight= 271 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09704 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lc0A/info/1lc0A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lc0A/nostruct-align/1lc0A.t2k-thin90.a2m.gz, have 35310 columns in 138 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v30A/nostruct-align/1v30A.t2k-thin90.a2m.gz
# 1v30A.t2k-thin90.a2m with 45 sequences, total weight= 25.0631 avg weight= 0.556959 34 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v30A/info/1v30A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v30A/nostruct-align/1v30A.t2k-thin90.a2m.gz, have 35428 columns in 139 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dfuP/nostruct-align/1dfuP.t2k-thin90.a2m.gz
# 1dfuP.t2k-thin90.a2m with 88 sequences, total weight= 28.5962 avg weight= 0.324956 45 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dfuP/info/1dfuP.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dfuP/nostruct-align/1dfuP.t2k-thin90.a2m.gz, have 35522 columns in 140 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1po5A/nostruct-align/1po5A.t2k-thin90.a2m.gz
# 1po5A.t2k-thin90.a2m with 1945 sequences, total weight= 1945 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03624 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1po5A/info/1po5A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1po5A/nostruct-align/1po5A.t2k-thin90.a2m.gz, have 35987 columns in 141 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1md6A/nostruct-align/1md6A.t2k-thin90.a2m.gz
# 1md6A.t2k-thin90.a2m with 57 sequences, total weight= 21.5647 avg weight= 0.378328 36 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1md6A/info/1md6A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1md6A/nostruct-align/1md6A.t2k-thin90.a2m.gz, have 36141 columns in 142 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qwrA/nostruct-align/1qwrA.t2k-thin90.a2m.gz
# 1qwrA.t2k-thin90.a2m with 98 sequences, total weight= 49.6419 avg weight= 0.50655 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qwrA/info/1qwrA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qwrA/nostruct-align/1qwrA.t2k-thin90.a2m.gz, have 36456 columns in 143 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uwkA/nostruct-align/1uwkA.t2k-thin90.a2m.gz
# 1uwkA.t2k-thin90.a2m with 61 sequences, total weight= 5.69356 avg weight= 0.0933371 24 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uwkA/info/1uwkA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uwkA/nostruct-align/1uwkA.t2k-thin90.a2m.gz, have 37010 columns in 144 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1upqA/nostruct-align/1upqA.t2k-thin90.a2m.gz
# 1upqA.t2k-thin90.a2m with 553 sequences, total weight= 553 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19374 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1upqA/info/1upqA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1upqA/nostruct-align/1upqA.t2k-thin90.a2m.gz, have 37117 columns in 145 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pwgA/nostruct-align/1pwgA.t2k-thin90.a2m.gz
# 1pwgA.t2k-thin90.a2m with 487 sequences, total weight= 487 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02923 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pwgA/info/1pwgA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pwgA/nostruct-align/1pwgA.t2k-thin90.a2m.gz, have 37462 columns in 146 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jx6A/nostruct-align/1jx6A.t2k-thin90.a2m.gz
# 1jx6A.t2k-thin90.a2m with 240 sequences, total weight= 240 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21574 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jx6A/info/1jx6A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jx6A/nostruct-align/1jx6A.t2k-thin90.a2m.gz, have 37800 columns in 147 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tqgA/nostruct-align/1tqgA.t2k-thin90.a2m.gz
# 1tqgA.t2k-thin90.a2m with 219 sequences, total weight= 112.441 avg weight= 0.513429 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30067 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tqgA/info/1tqgA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tqgA/nostruct-align/1tqgA.t2k-thin90.a2m.gz, have 37905 columns in 148 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f5vA/nostruct-align/1f5vA.t2k-thin90.a2m.gz
# 1f5vA.t2k-thin90.a2m with 184 sequences, total weight= 180.972 avg weight= 0.983541 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f5vA/info/1f5vA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f5vA/nostruct-align/1f5vA.t2k-thin90.a2m.gz, have 38145 columns in 149 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fcqA/nostruct-align/1fcqA.t2k-thin90.a2m.gz
# 1fcqA.t2k-thin90.a2m with 29 sequences, total weight= 8.43378 avg weight= 0.29082 29 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fcqA/info/1fcqA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fcqA/nostruct-align/1fcqA.t2k-thin90.a2m.gz, have 38459 columns in 150 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pbyB/nostruct-align/1pbyB.t2k-thin90.a2m.gz
# 1pbyB.t2k-thin90.a2m with 112 sequences, total weight= 112 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04118 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pbyB/info/1pbyB.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pbyB/nostruct-align/1pbyB.t2k-thin90.a2m.gz, have 38796 columns in 151 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1b3aA/nostruct-align/1b3aA.t2k-thin90.a2m.gz
# 1b3aA.t2k-thin90.a2m with 180 sequences, total weight= 54.6432 avg weight= 0.303573 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1b3aA/info/1b3aA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1b/1b3aA/nostruct-align/1b3aA.t2k-thin90.a2m.gz, have 38863 columns in 152 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dqzA/nostruct-align/1dqzA.t2k-thin90.a2m.gz
# 1dqzA.t2k-thin90.a2m with 110 sequences, total weight= 110 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22055 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dqzA/info/1dqzA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dqzA/nostruct-align/1dqzA.t2k-thin90.a2m.gz, have 39143 columns in 153 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rkuA/nostruct-align/1rkuA.t2k-thin90.a2m.gz
# 1rkuA.t2k-thin90.a2m with 174 sequences, total weight= 111.751 avg weight= 0.642246 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rkuA/info/1rkuA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rkuA/nostruct-align/1rkuA.t2k-thin90.a2m.gz, have 39349 columns in 154 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hfeS/nostruct-align/1hfeS.t2k-thin90.a2m.gz
# 1hfeS.t2k-thin90.a2m with 35 sequences, total weight= 14.0114 avg weight= 0.400326 26 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hfeS/info/1hfeS.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hfeS/nostruct-align/1hfeS.t2k-thin90.a2m.gz, have 39437 columns in 155 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nnhA/nostruct-align/1nnhA.t2k-thin90.a2m.gz
# 1nnhA.t2k-thin90.a2m with 472 sequences, total weight= 90.7804 avg weight= 0.192331 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30205 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nnhA/info/1nnhA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nnhA/nostruct-align/1nnhA.t2k-thin90.a2m.gz, have 39730 columns in 156 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vkiA/nostruct-align/1vkiA.t2k-thin90.a2m.gz
# 1vkiA.t2k-thin90.a2m with 50 sequences, total weight= 49.8649 avg weight= 0.997297 21 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vkiA/info/1vkiA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vkiA/nostruct-align/1vkiA.t2k-thin90.a2m.gz, have 39895 columns in 157 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o66A/nostruct-align/1o66A.t2k-thin90.a2m.gz
# 1o66A.t2k-thin90.a2m with 110 sequences, total weight= 10.4119 avg weight= 0.0946536 33 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o66A/info/1o66A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o66A/nostruct-align/1o66A.t2k-thin90.a2m.gz, have 40144 columns in 158 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xfkA/nostruct-align/1xfkA.t2k-thin90.a2m.gz
# 1xfkA.t2k-thin90.a2m with 250 sequences, total weight= 165.74 avg weight= 0.662961 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30113 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xfkA/info/1xfkA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1xfkA/nostruct-align/1xfkA.t2k-thin90.a2m.gz, have 40468 columns in 159 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1ybiA/nostruct-align/1ybiA.t2k-thin90.a2m.gz
# 1ybiA.t2k-thin90.a2m with 70 sequences, total weight= 51.6917 avg weight= 0.738453 30 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1ybiA/info/1ybiA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1y/1ybiA/nostruct-align/1ybiA.t2k-thin90.a2m.gz, have 40752 columns in 160 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vicA/nostruct-align/1vicA.t2k-thin90.a2m.gz
# 1vicA.t2k-thin90.a2m with 368 sequences, total weight= 368 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05863 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vicA/info/1vicA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vicA/nostruct-align/1vicA.t2k-thin90.a2m.gz, have 41007 columns in 161 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j6oA/nostruct-align/1j6oA.t2k-thin90.a2m.gz
# 1j6oA.t2k-thin90.a2m with 239 sequences, total weight= 121.745 avg weight= 0.509392 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3021 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j6oA/info/1j6oA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j6oA/nostruct-align/1j6oA.t2k-thin90.a2m.gz, have 41267 columns in 162 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tukA/nostruct-align/1tukA.t2k-thin90.a2m.gz
# 1tukA.t2k-thin90.a2m with 44 sequences, total weight= 7.22619 avg weight= 0.164232 31 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tukA/info/1tukA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tukA/nostruct-align/1tukA.t2k-thin90.a2m.gz, have 41334 columns in 163 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h4aX/nostruct-align/1h4aX.t2k-thin90.a2m.gz
# 1h4aX.t2k-thin90.a2m with 90 sequences, total weight= 24.0921 avg weight= 0.267691 37 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h4aX/info/1h4aX.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h4aX/nostruct-align/1h4aX.t2k-thin90.a2m.gz, have 41507 columns in 164 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xteA/nostruct-align/1xteA.t2k-thin90.a2m.gz
# 1xteA.t2k-thin90.a2m with 311 sequences, total weight= 265.318 avg weight= 0.853113 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30073 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xteA/info/1xteA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1xteA/nostruct-align/1xteA.t2k-thin90.a2m.gz, have 41623 columns in 165 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i1wA/nostruct-align/1i1wA.t2k-thin90.a2m.gz
# 1i1wA.t2k-thin90.a2m with 146 sequences, total weight= 59.2007 avg weight= 0.405484 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i1wA/info/1i1wA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i1wA/nostruct-align/1i1wA.t2k-thin90.a2m.gz, have 41926 columns in 166 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1ten/nostruct-align/1ten.t2k-thin90.a2m.gz
# 1ten.t2k-thin90.a2m with 709 sequences, total weight= 709 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08666 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1ten/info/1ten.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1ten/nostruct-align/1ten.t2k-thin90.a2m.gz, have 42015 columns in 167 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cb0A/nostruct-align/1cb0A.t2k-thin90.a2m.gz
# 1cb0A.t2k-thin90.a2m with 133 sequences, total weight= 41.2608 avg weight= 0.310231 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cb0A/info/1cb0A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cb0A/nostruct-align/1cb0A.t2k-thin90.a2m.gz, have 42283 columns in 168 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oalA/nostruct-align/1oalA.t2k-thin90.a2m.gz
# 1oalA.t2k-thin90.a2m with 197 sequences, total weight= 25.0831 avg weight= 0.127326 45 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oalA/info/1oalA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oalA/nostruct-align/1oalA.t2k-thin90.a2m.gz, have 42434 columns in 169 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1deuA/nostruct-align/1deuA.t2k-thin90.a2m.gz
# 1deuA.t2k-thin90.a2m with 421 sequences, total weight= 121.728 avg weight= 0.289139 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30206 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1deuA/info/1deuA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1d/1deuA/nostruct-align/1deuA.t2k-thin90.a2m.gz, have 42709 columns in 170 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1ygtA/nostruct-align/1ygtA.t2k-thin90.a2m.gz
# 1ygtA.t2k-thin90.a2m with 79 sequences, total weight= 34.3974 avg weight= 0.435411 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1ygtA/info/1ygtA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1y/1ygtA/nostruct-align/1ygtA.t2k-thin90.a2m.gz, have 42813 columns in 171 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oh0A/nostruct-align/1oh0A.t2k-thin90.a2m.gz
# 1oh0A.t2k-thin90.a2m with 58 sequences, total weight= 58 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03884 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oh0A/info/1oh0A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oh0A/nostruct-align/1oh0A.t2k-thin90.a2m.gz, have 42938 columns in 172 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1byi/nostruct-align/1byi.t2k-thin90.a2m.gz
# 1byi.t2k-thin90.a2m with 188 sequences, total weight= 178.331 avg weight= 0.948568 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1byi/info/1byi.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1b/1byi/nostruct-align/1byi.t2k-thin90.a2m.gz, have 43162 columns in 173 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wkqA/nostruct-align/1wkqA.t2k-thin90.a2m.gz
# 1wkqA.t2k-thin90.a2m with 465 sequences, total weight= 200.961 avg weight= 0.432174 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30325 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wkqA/info/1wkqA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1wkqA/nostruct-align/1wkqA.t2k-thin90.a2m.gz, have 43320 columns in 174 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eexG/nostruct-align/1eexG.t2k-thin90.a2m.gz
# 1eexG.t2k-thin90.a2m with 8 sequences, total weight= 3.51513 avg weight= 0.439391 13 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eexG/info/1eexG.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1eexG/nostruct-align/1eexG.t2k-thin90.a2m.gz, have 43457 columns in 175 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m0kA/nostruct-align/1m0kA.t2k-thin90.a2m.gz
# 1m0kA.t2k-thin90.a2m with 44 sequences, total weight= 27.9711 avg weight= 0.635708 33 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m0kA/info/1m0kA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m0kA/nostruct-align/1m0kA.t2k-thin90.a2m.gz, have 43679 columns in 176 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t0tV/nostruct-align/1t0tV.t2k-thin90.a2m.gz
# 1t0tV.t2k-thin90.a2m with 32 sequences, total weight= 21.119 avg weight= 0.65997 29 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t0tV/info/1t0tV.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t0tV/nostruct-align/1t0tV.t2k-thin90.a2m.gz, have 43922 columns in 177 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m6pA/nostruct-align/1m6pA.t2k-thin90.a2m.gz
# 1m6pA.t2k-thin90.a2m with 174 sequences, total weight= 71.2645 avg weight= 0.409566 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30056 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m6pA/info/1m6pA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m6pA/nostruct-align/1m6pA.t2k-thin90.a2m.gz, have 44068 columns in 178 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e6uA/nostruct-align/1e6uA.t2k-thin90.a2m.gz
# 1e6uA.t2k-thin90.a2m with 445 sequences, total weight= 445 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19376 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e6uA/info/1e6uA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e6uA/nostruct-align/1e6uA.t2k-thin90.a2m.gz, have 44383 columns in 179 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q5yA/nostruct-align/1q5yA.t2k-thin90.a2m.gz
# 1q5yA.t2k-thin90.a2m with 34 sequences, total weight= 13.4784 avg weight= 0.396425 28 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q5yA/info/1q5yA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q5yA/nostruct-align/1q5yA.t2k-thin90.a2m.gz, have 44467 columns in 180 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r0rI/nostruct-align/1r0rI.t2k-thin90.a2m.gz
# 1r0rI.t2k-thin90.a2m with 181 sequences, total weight= 50.6267 avg weight= 0.279705 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r0rI/info/1r0rI.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r0rI/nostruct-align/1r0rI.t2k-thin90.a2m.gz, have 44518 columns in 181 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w2yA/nostruct-align/1w2yA.t2k-thin90.a2m.gz
# 1w2yA.t2k-thin90.a2m with 21 sequences, total weight= 20.1621 avg weight= 0.9601 16 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w2yA/info/1w2yA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1w2yA/nostruct-align/1w2yA.t2k-thin90.a2m.gz, have 44744 columns in 182 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e7wA/nostruct-align/1e7wA.t2k-thin90.a2m.gz
# 1e7wA.t2k-thin90.a2m with 1199 sequences, total weight= 370.146 avg weight= 0.308712 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31013 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e7wA/info/1e7wA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e7wA/nostruct-align/1e7wA.t2k-thin90.a2m.gz, have 45011 columns in 183 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lopA/nostruct-align/1lopA.t2k-thin90.a2m.gz
# 1lopA.t2k-thin90.a2m with 209 sequences, total weight= 34.4415 avg weight= 0.164792 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lopA/info/1lopA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lopA/nostruct-align/1lopA.t2k-thin90.a2m.gz, have 45175 columns in 184 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1ty9A/nostruct-align/1ty9A.t2k-thin90.a2m.gz
# 1ty9A.t2k-thin90.a2m with 139 sequences, total weight= 29.4161 avg weight= 0.211626 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1ty9A/info/1ty9A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1ty9A/nostruct-align/1ty9A.t2k-thin90.a2m.gz, have 45377 columns in 185 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t61A/nostruct-align/1t61A.t2k-thin90.a2m.gz
# 1t61A.t2k-thin90.a2m with 45 sequences, total weight= 4.02931 avg weight= 0.0895401 21 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t61A/info/1t61A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t61A/nostruct-align/1t61A.t2k-thin90.a2m.gz, have 45600 columns in 186 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fj2A/nostruct-align/1fj2A.t2k-thin90.a2m.gz
# 1fj2A.t2k-thin90.a2m with 234 sequences, total weight= 234 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.934388 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fj2A/info/1fj2A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fj2A/nostruct-align/1fj2A.t2k-thin90.a2m.gz, have 45829 columns in 187 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a8d/nostruct-align/1a8d.t2k-thin90.a2m.gz
# 1a8d.t2k-thin90.a2m with 26 sequences, total weight= 19.4746 avg weight= 0.749023 24 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1a8d/info/1a8d.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1a/1a8d/nostruct-align/1a8d.t2k-thin90.a2m.gz, have 46281 columns in 188 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sxrA/nostruct-align/1sxrA.t2k-thin90.a2m.gz
# 1sxrA.t2k-thin90.a2m with 105 sequences, total weight= 38.7919 avg weight= 0.369447 41 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sxrA/info/1sxrA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sxrA/nostruct-align/1sxrA.t2k-thin90.a2m.gz, have 46454 columns in 189 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kgdA/nostruct-align/1kgdA.t2k-thin90.a2m.gz
# 1kgdA.t2k-thin90.a2m with 190 sequences, total weight= 51.7691 avg weight= 0.272469 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kgdA/info/1kgdA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kgdA/nostruct-align/1kgdA.t2k-thin90.a2m.gz, have 46629 columns in 190 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1px5A/nostruct-align/1px5A.t2k-thin90.a2m.gz
# 1px5A.t2k-thin90.a2m with 35 sequences, total weight= 10.8486 avg weight= 0.309961 27 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1px5A/info/1px5A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1px5A/nostruct-align/1px5A.t2k-thin90.a2m.gz, have 46958 columns in 191 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1npk/nostruct-align/1npk.t2k-thin90.a2m.gz
# 1npk.t2k-thin90.a2m with 223 sequences, total weight= 26.8092 avg weight= 0.12022 41 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1npk/info/1npk.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1npk/nostruct-align/1npk.t2k-thin90.a2m.gz, have 47108 columns in 192 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sbyA/nostruct-align/1sbyA.t2k-thin90.a2m.gz
# 1sbyA.t2k-thin90.a2m with 4830 sequences, total weight= 4830 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.288 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sbyA/info/1sbyA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sbyA/nostruct-align/1sbyA.t2k-thin90.a2m.gz, have 47362 columns in 193 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i1jA/nostruct-align/1i1jA.t2k-thin90.a2m.gz
# 1i1jA.t2k-thin90.a2m with 72 sequences, total weight= 66.03 avg weight= 0.917083 33 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i1jA/info/1i1jA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i1jA/nostruct-align/1i1jA.t2k-thin90.a2m.gz, have 47468 columns in 194 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t1vA/nostruct-align/1t1vA.t2k-thin90.a2m.gz
# 1t1vA.t2k-thin90.a2m with 194 sequences, total weight= 60.8429 avg weight= 0.313623 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t1vA/info/1t1vA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t1vA/nostruct-align/1t1vA.t2k-thin90.a2m.gz, have 47561 columns in 195 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j0pA/nostruct-align/1j0pA.t2k-thin90.a2m.gz
# 1j0pA.t2k-thin90.a2m with 54 sequences, total weight= 54 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11275 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j0pA/info/1j0pA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j0pA/nostruct-align/1j0pA.t2k-thin90.a2m.gz, have 47669 columns in 196 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1llfA/nostruct-align/1llfA.t2k-thin90.a2m.gz
# 1llfA.t2k-thin90.a2m with 412 sequences, total weight= 412 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14781 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1llfA/info/1llfA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1l/1llfA/nostruct-align/1llfA.t2k-thin90.a2m.gz, have 48203 columns in 197 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t2wA/nostruct-align/1t2wA.t2k-thin90.a2m.gz
# 1t2wA.t2k-thin90.a2m with 93 sequences, total weight= 31.6839 avg weight= 0.340687 43 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t2wA/info/1t2wA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t2wA/nostruct-align/1t2wA.t2k-thin90.a2m.gz, have 48348 columns in 198 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1yrcA/nostruct-align/1yrcA.t2k-thin90.a2m.gz
# 1yrcA.t2k-thin90.a2m with 1024 sequences, total weight= 1024 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11225 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1yrcA/info/1yrcA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1y/1yrcA/nostruct-align/1yrcA.t2k-thin90.a2m.gz, have 48753 columns in 199 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lniA/nostruct-align/1lniA.t2k-thin90.a2m.gz
# 1lniA.t2k-thin90.a2m with 18 sequences, total weight= 5.48722 avg weight= 0.304846 20 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lniA/info/1lniA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lniA/nostruct-align/1lniA.t2k-thin90.a2m.gz, have 48849 columns in 200 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p5dX/nostruct-align/1p5dX.t2k-thin90.a2m.gz
# 1p5dX.t2k-thin90.a2m with 445 sequences, total weight= 445 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25482 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p5dX/info/1p5dX.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1p5dX/nostruct-align/1p5dX.t2k-thin90.a2m.gz, have 49304 columns in 201 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eu3A/nostruct-align/1eu3A.t2k-thin90.a2m.gz
# 1eu3A.t2k-thin90.a2m with 56 sequences, total weight= 51.5499 avg weight= 0.920535 36 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eu3A/info/1eu3A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1eu3A/nostruct-align/1eu3A.t2k-thin90.a2m.gz, have 49514 columns in 202 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kpf/nostruct-align/1kpf.t2k-thin90.a2m.gz
# 1kpf.t2k-thin90.a2m with 250 sequences, total weight= 84.9089 avg weight= 0.339636 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30083 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kpf/info/1kpf.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kpf/nostruct-align/1kpf.t2k-thin90.a2m.gz, have 49625 columns in 203 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m1fA/nostruct-align/1m1fA.t2k-thin90.a2m.gz
# 1m1fA.t2k-thin90.a2m with 70 sequences, total weight= 37.3343 avg weight= 0.533348 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m1fA/info/1m1fA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m1fA/nostruct-align/1m1fA.t2k-thin90.a2m.gz, have 49732 columns in 204 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qhoA/nostruct-align/1qhoA.t2k-thin90.a2m.gz
# 1qhoA.t2k-thin90.a2m with 368 sequences, total weight= 368 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11885 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qhoA/info/1qhoA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qhoA/nostruct-align/1qhoA.t2k-thin90.a2m.gz, have 50418 columns in 205 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1yacA/nostruct-align/1yacA.t2k-thin90.a2m.gz
# 1yacA.t2k-thin90.a2m with 274 sequences, total weight= 274 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29941 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1yacA/info/1yacA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1y/1yacA/nostruct-align/1yacA.t2k-thin90.a2m.gz, have 50622 columns in 206 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p3cA/nostruct-align/1p3cA.t2k-thin90.a2m.gz
# 1p3cA.t2k-thin90.a2m with 618 sequences, total weight= 618 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15769 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p3cA/info/1p3cA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1p3cA/nostruct-align/1p3cA.t2k-thin90.a2m.gz, have 50837 columns in 207 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o7qA/nostruct-align/1o7qA.t2k-thin90.a2m.gz
# 1o7qA.t2k-thin90.a2m with 24 sequences, total weight= 8.05 avg weight= 0.335417 23 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o7qA/info/1o7qA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o7qA/nostruct-align/1o7qA.t2k-thin90.a2m.gz, have 51124 columns in 208 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mgqA/nostruct-align/1mgqA.t2k-thin90.a2m.gz
# 1mgqA.t2k-thin90.a2m with 201 sequences, total weight= 71.009 avg weight= 0.353279 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mgqA/info/1mgqA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mgqA/nostruct-align/1mgqA.t2k-thin90.a2m.gz, have 51198 columns in 209 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w3iA/nostruct-align/1w3iA.t2k-thin90.a2m.gz
# 1w3iA.t2k-thin90.a2m with 432 sequences, total weight= 181.4 avg weight= 0.419907 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30218 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w3iA/info/1w3iA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1w3iA/nostruct-align/1w3iA.t2k-thin90.a2m.gz, have 51491 columns in 210 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uxzA/nostruct-align/1uxzA.t2k-thin90.a2m.gz
# 1uxzA.t2k-thin90.a2m with 153 sequences, total weight= 110.846 avg weight= 0.724484 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uxzA/info/1uxzA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uxzA/nostruct-align/1uxzA.t2k-thin90.a2m.gz, have 51622 columns in 211 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1ra0A/nostruct-align/1ra0A.t2k-thin90.a2m.gz
# 1ra0A.t2k-thin90.a2m with 222 sequences, total weight= 222 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02966 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1ra0A/info/1ra0A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1ra0A/nostruct-align/1ra0A.t2k-thin90.a2m.gz, have 52045 columns in 212 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wm3A/nostruct-align/1wm3A.t2k-thin90.a2m.gz
# 1wm3A.t2k-thin90.a2m with 88 sequences, total weight= 36.3962 avg weight= 0.413593 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wm3A/info/1wm3A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1wm3A/nostruct-align/1wm3A.t2k-thin90.a2m.gz, have 52117 columns in 213 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r12A/nostruct-align/1r12A.t2k-thin90.a2m.gz
# 1r12A.t2k-thin90.a2m with 10 sequences, total weight= 6.27209 avg weight= 0.627209 18 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r12A/info/1r12A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r12A/nostruct-align/1r12A.t2k-thin90.a2m.gz, have 52368 columns in 214 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1egwA/nostruct-align/1egwA.t2k-thin90.a2m.gz
# 1egwA.t2k-thin90.a2m with 247 sequences, total weight= 14.2941 avg weight= 0.057871 35 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1egwA/info/1egwA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1egwA/nostruct-align/1egwA.t2k-thin90.a2m.gz, have 52439 columns in 215 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jmkC/nostruct-align/1jmkC.t2k-thin90.a2m.gz
# 1jmkC.t2k-thin90.a2m with 220 sequences, total weight= 220 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04524 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jmkC/info/1jmkC.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jmkC/nostruct-align/1jmkC.t2k-thin90.a2m.gz, have 52661 columns in 216 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1duvG/nostruct-align/1duvG.t2k-thin90.a2m.gz
# 1duvG.t2k-thin90.a2m with 174 sequences, total weight= 33.6078 avg weight= 0.193148 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1duvG/info/1duvG.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1d/1duvG/nostruct-align/1duvG.t2k-thin90.a2m.gz, have 52994 columns in 217 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rocA/nostruct-align/1rocA.t2k-thin90.a2m.gz
# 1rocA.t2k-thin90.a2m with 18 sequences, total weight= 8.45724 avg weight= 0.469847 21 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rocA/info/1rocA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rocA/nostruct-align/1rocA.t2k-thin90.a2m.gz, have 53149 columns in 218 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v70A/nostruct-align/1v70A.t2k-thin90.a2m.gz
# 1v70A.t2k-thin90.a2m with 564 sequences, total weight= 564 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12354 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v70A/info/1v70A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v70A/nostruct-align/1v70A.t2k-thin90.a2m.gz, have 53254 columns in 219 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i71A/nostruct-align/1i71A.t2k-thin90.a2m.gz
# 1i71A.t2k-thin90.a2m with 142 sequences, total weight= 17.9187 avg weight= 0.126188 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i71A/info/1i71A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i71A/nostruct-align/1i71A.t2k-thin90.a2m.gz, have 53337 columns in 220 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dqgA/nostruct-align/1dqgA.t2k-thin90.a2m.gz
# 1dqgA.t2k-thin90.a2m with 23 sequences, total weight= 17.39 avg weight= 0.756085 22 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dqgA/info/1dqgA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dqgA/nostruct-align/1dqgA.t2k-thin90.a2m.gz, have 53471 columns in 221 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pq7A/nostruct-align/1pq7A.t2k-thin90.a2m.gz
# 1pq7A.t2k-thin90.a2m with 1542 sequences, total weight= 588.242 avg weight= 0.38148 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31929 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pq7A/info/1pq7A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pq7A/nostruct-align/1pq7A.t2k-thin90.a2m.gz, have 53695 columns in 222 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l1lA/nostruct-align/1l1lA.t2k-thin90.a2m.gz
# 1l1lA.t2k-thin90.a2m with 51 sequences, total weight= 40.3366 avg weight= 0.790915 30 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l1lA/info/1l1lA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1l/1l1lA/nostruct-align/1l1lA.t2k-thin90.a2m.gz, have 54412 columns in 223 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e2wA/nostruct-align/1e2wA.t2k-thin90.a2m.gz
# 1e2wA.t2k-thin90.a2m with 32 sequences, total weight= 3.43532 avg weight= 0.107354 19 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e2wA/info/1e2wA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e2wA/nostruct-align/1e2wA.t2k-thin90.a2m.gz, have 54663 columns in 224 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lam/nostruct-align/1lam.t2k-thin90.a2m.gz
# 1lam.t2k-thin90.a2m with 175 sequences, total weight= 45.5387 avg weight= 0.260221 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30034 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lam/info/1lam.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lam/nostruct-align/1lam.t2k-thin90.a2m.gz, have 55147 columns in 225 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xx1A/nostruct-align/1xx1A.t2k-thin90.a2m.gz
# 1xx1A.t2k-thin90.a2m with 45 sequences, total weight= 15.3253 avg weight= 0.340562 19 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xx1A/info/1xx1A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1xx1A/nostruct-align/1xx1A.t2k-thin90.a2m.gz, have 55432 columns in 226 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1ltzA/nostruct-align/1ltzA.t2k-thin90.a2m.gz
# 1ltzA.t2k-thin90.a2m with 50 sequences, total weight= 13.8597 avg weight= 0.277194 29 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1ltzA/info/1ltzA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1l/1ltzA/nostruct-align/1ltzA.t2k-thin90.a2m.gz, have 55706 columns in 227 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nar/nostruct-align/1nar.t2k-thin90.a2m.gz
# 1nar.t2k-thin90.a2m with 150 sequences, total weight= 101.483 avg weight= 0.676553 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nar/info/1nar.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nar/nostruct-align/1nar.t2k-thin90.a2m.gz, have 55995 columns in 228 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xppA/nostruct-align/1xppA.t2k-thin90.a2m.gz
# 1xppA.t2k-thin90.a2m with 71 sequences, total weight= 33.4746 avg weight= 0.471474 39 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xppA/info/1xppA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1xppA/nostruct-align/1xppA.t2k-thin90.a2m.gz, have 56094 columns in 229 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kyfA/nostruct-align/1kyfA.t2k-thin90.a2m.gz
# 1kyfA.t2k-thin90.a2m with 14 sequences, total weight= 14 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25372 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kyfA/info/1kyfA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kyfA/nostruct-align/1kyfA.t2k-thin90.a2m.gz, have 56341 columns in 230 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i40A/nostruct-align/1i40A.t2k-thin90.a2m.gz
# 1i40A.t2k-thin90.a2m with 139 sequences, total weight= 24.3314 avg weight= 0.175046 41 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i40A/info/1i40A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i40A/nostruct-align/1i40A.t2k-thin90.a2m.gz, have 56516 columns in 231 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1io0A/nostruct-align/1io0A.t2k-thin90.a2m.gz
# 1io0A.t2k-thin90.a2m with 212 sequences, total weight= 212 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13336 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1io0A/info/1io0A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1io0A/nostruct-align/1io0A.t2k-thin90.a2m.gz, have 56682 columns in 232 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/8a/8abp/nostruct-align/8abp.t2k-thin90.a2m.gz
# 8abp.t2k-thin90.a2m with 215 sequences, total weight= 215 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16704 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/8a/8abp/info/8abp.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/8a/8abp/nostruct-align/8abp.t2k-thin90.a2m.gz, have 56987 columns in 233 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cjwA/nostruct-align/1cjwA.t2k-thin90.a2m.gz
# 1cjwA.t2k-thin90.a2m with 195 sequences, total weight= 195 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.940738 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cjwA/info/1cjwA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cjwA/nostruct-align/1cjwA.t2k-thin90.a2m.gz, have 57153 columns in 234 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2b/2bopA/nostruct-align/2bopA.t2k-thin90.a2m.gz
# 2bopA.t2k-thin90.a2m with 101 sequences, total weight= 14.2015 avg weight= 0.140609 37 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2b/2bopA/info/2bopA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/2b/2bopA/nostruct-align/2bopA.t2k-thin90.a2m.gz, have 57238 columns in 235 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xzzA/nostruct-align/1xzzA.t2k-thin90.a2m.gz
# 1xzzA.t2k-thin90.a2m with 44 sequences, total weight= 14.8888 avg weight= 0.338381 22 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xzzA/info/1xzzA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1xzzA/nostruct-align/1xzzA.t2k-thin90.a2m.gz, have 57454 columns in 236 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qmgA/nostruct-align/1qmgA.t2k-thin90.a2m.gz
# 1qmgA.t2k-thin90.a2m with 107 sequences, total weight= 13.8665 avg weight= 0.129593 26 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qmgA/info/1qmgA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qmgA/nostruct-align/1qmgA.t2k-thin90.a2m.gz, have 57968 columns in 237 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jovA/nostruct-align/1jovA.t2k-thin90.a2m.gz
# 1jovA.t2k-thin90.a2m with 52 sequences, total weight= 41.8933 avg weight= 0.805641 39 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jovA/info/1jovA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jovA/nostruct-align/1jovA.t2k-thin90.a2m.gz, have 58237 columns in 238 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1ws8A/nostruct-align/1ws8A.t2k-thin90.a2m.gz
# 1ws8A.t2k-thin90.a2m with 133 sequences, total weight= 24.557 avg weight= 0.184639 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1ws8A/info/1ws8A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1ws8A/nostruct-align/1ws8A.t2k-thin90.a2m.gz, have 58341 columns in 239 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vmgA/nostruct-align/1vmgA.t2k-thin90.a2m.gz
# 1vmgA.t2k-thin90.a2m with 214 sequences, total weight= 78.6541 avg weight= 0.367542 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30055 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vmgA/info/1vmgA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vmgA/nostruct-align/1vmgA.t2k-thin90.a2m.gz, have 58424 columns in 240 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hqkA/nostruct-align/1hqkA.t2k-thin90.a2m.gz
# 1hqkA.t2k-thin90.a2m with 135 sequences, total weight= 21.4408 avg weight= 0.158821 39 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hqkA/info/1hqkA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hqkA/nostruct-align/1hqkA.t2k-thin90.a2m.gz, have 58578 columns in 241 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e85A/nostruct-align/1e85A.t2k-thin90.a2m.gz
# 1e85A.t2k-thin90.a2m with 36 sequences, total weight= 31.6579 avg weight= 0.879386 32 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e85A/info/1e85A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e85A/nostruct-align/1e85A.t2k-thin90.a2m.gz, have 58703 columns in 242 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e6bA/nostruct-align/1e6bA.t2k-thin90.a2m.gz
# 1e6bA.t2k-thin90.a2m with 599 sequences, total weight= 599 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.171 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e6bA/info/1e6bA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e6bA/nostruct-align/1e6bA.t2k-thin90.a2m.gz, have 58897 columns in 243 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nzyA/nostruct-align/1nzyA.t2k-thin90.a2m.gz
# 1nzyA.t2k-thin90.a2m with 361 sequences, total weight= 361 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24866 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nzyA/info/1nzyA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nzyA/nostruct-align/1nzyA.t2k-thin90.a2m.gz, have 59166 columns in 244 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n93X/nostruct-align/1n93X.t2k-thin90.a2m.gz
# 1n93X.t2k-thin90.a2m with 5 sequences, total weight= 5 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27855 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n93X/info/1n93X.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n93X/nostruct-align/1n93X.t2k-thin90.a2m.gz, have 59501 columns in 245 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qq5A/nostruct-align/1qq5A.t2k-thin90.a2m.gz
# 1qq5A.t2k-thin90.a2m with 272 sequences, total weight= 272 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00466 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qq5A/info/1qq5A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qq5A/nostruct-align/1qq5A.t2k-thin90.a2m.gz, have 59746 columns in 246 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1si6X/nostruct-align/1si6X.t2k-thin90.a2m.gz
# 1si6X.t2k-thin90.a2m with 186 sequences, total weight= 66.4696 avg weight= 0.357364 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30101 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1si6X/info/1si6X.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1s/1si6X/nostruct-align/1si6X.t2k-thin90.a2m.gz, have 60026 columns in 247 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r5rA/nostruct-align/1r5rA.t2k-thin90.a2m.gz
# 1r5rA.t2k-thin90.a2m with 100 sequences, total weight= 100 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07755 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r5rA/info/1r5rA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r5rA/nostruct-align/1r5rA.t2k-thin90.a2m.gz, have 60143 columns in 248 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ow1A/nostruct-align/1ow1A.t2k-thin90.a2m.gz
# 1ow1A.t2k-thin90.a2m with 10 sequences, total weight= 7.34533 avg weight= 0.734533 17 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ow1A/info/1ow1A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1ow1A/nostruct-align/1ow1A.t2k-thin90.a2m.gz, have 60310 columns in 249 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iirA/nostruct-align/1iirA.t2k-thin90.a2m.gz
# 1iirA.t2k-thin90.a2m with 244 sequences, total weight= 244 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04368 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iirA/info/1iirA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1iirA/nostruct-align/1iirA.t2k-thin90.a2m.gz, have 60692 columns in 250 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vggA/nostruct-align/1vggA.t2k-thin90.a2m.gz
# 1vggA.t2k-thin90.a2m with 24 sequences, total weight= 3.80272 avg weight= 0.158447 19 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vggA/info/1vggA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vggA/nostruct-align/1vggA.t2k-thin90.a2m.gz, have 60853 columns in 251 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oc7A/nostruct-align/1oc7A.t2k-thin90.a2m.gz
# 1oc7A.t2k-thin90.a2m with 60 sequences, total weight= 18.7363 avg weight= 0.312272 34 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oc7A/info/1oc7A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oc7A/nostruct-align/1oc7A.t2k-thin90.a2m.gz, have 61217 columns in 252 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wkrA/nostruct-align/1wkrA.t2k-thin90.a2m.gz
# 1wkrA.t2k-thin90.a2m with 651 sequences, total weight= 651 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27813 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wkrA/info/1wkrA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1wkrA/nostruct-align/1wkrA.t2k-thin90.a2m.gz, have 61557 columns in 253 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v4vA/nostruct-align/1v4vA.t2k-thin90.a2m.gz
# 1v4vA.t2k-thin90.a2m with 142 sequences, total weight= 62.0011 avg weight= 0.436627 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v4vA/info/1v4vA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v4vA/nostruct-align/1v4vA.t2k-thin90.a2m.gz, have 61930 columns in 254 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wy2A/nostruct-align/1wy2A.t2k-thin90.a2m.gz
# 1wy2A.t2k-thin90.a2m with 924 sequences, total weight= 924 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13312 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wy2A/info/1wy2A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1wy2A/nostruct-align/1wy2A.t2k-thin90.a2m.gz, have 62281 columns in 255 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tt8A/nostruct-align/1tt8A.t2k-thin90.a2m.gz
# 1tt8A.t2k-thin90.a2m with 47 sequences, total weight= 33.8771 avg weight= 0.720789 39 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tt8A/info/1tt8A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tt8A/nostruct-align/1tt8A.t2k-thin90.a2m.gz, have 62445 columns in 256 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qsgA/nostruct-align/1qsgA.t2k-thin90.a2m.gz
# 1qsgA.t2k-thin90.a2m with 924 sequences, total weight= 281.41 avg weight= 0.304556 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31194 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qsgA/info/1qsgA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qsgA/nostruct-align/1qsgA.t2k-thin90.a2m.gz, have 62703 columns in 257 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1aquA/nostruct-align/1aquA.t2k-thin90.a2m.gz
# 1aquA.t2k-thin90.a2m with 148 sequences, total weight= 99.5748 avg weight= 0.672803 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30038 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1aquA/info/1aquA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1a/1aquA/nostruct-align/1aquA.t2k-thin90.a2m.gz, have 62984 columns in 258 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1llnA/nostruct-align/1llnA.t2k-thin90.a2m.gz
# 1llnA.t2k-thin90.a2m with 79 sequences, total weight= 52.3117 avg weight= 0.662173 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1llnA/info/1llnA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1l/1llnA/nostruct-align/1llnA.t2k-thin90.a2m.gz, have 63246 columns in 259 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hdoA/nostruct-align/1hdoA.t2k-thin90.a2m.gz
# 1hdoA.t2k-thin90.a2m with 256 sequences, total weight= 256 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.06571 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hdoA/info/1hdoA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hdoA/nostruct-align/1hdoA.t2k-thin90.a2m.gz, have 63451 columns in 260 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1c1dA/nostruct-align/1c1dA.t2k-thin90.a2m.gz
# 1c1dA.t2k-thin90.a2m with 247 sequences, total weight= 42.434 avg weight= 0.171797 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1c1dA/info/1c1dA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1c/1c1dA/nostruct-align/1c1dA.t2k-thin90.a2m.gz, have 63800 columns in 261 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vk5A/nostruct-align/1vk5A.t2k-thin90.a2m.gz
# 1vk5A.t2k-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.58791 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vk5A/info/1vk5A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vk5A/nostruct-align/1vk5A.t2k-thin90.a2m.gz, have 63921 columns in 262 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ie9A/nostruct-align/1ie9A.t2k-thin90.a2m.gz
# 1ie9A.t2k-thin90.a2m with 250 sequences, total weight= 250 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03377 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ie9A/info/1ie9A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1ie9A/nostruct-align/1ie9A.t2k-thin90.a2m.gz, have 64176 columns in 263 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1ay7B/nostruct-align/1ay7B.t2k-thin90.a2m.gz
# 1ay7B.t2k-thin90.a2m with 22 sequences, total weight= 22 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29556 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1ay7B/info/1ay7B.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1a/1ay7B/nostruct-align/1ay7B.t2k-thin90.a2m.gz, have 64265 columns in 264 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cruA/nostruct-align/1cruA.t2k-thin90.a2m.gz
# 1cruA.t2k-thin90.a2m with 99 sequences, total weight= 99 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21869 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cruA/info/1cruA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cruA/nostruct-align/1cruA.t2k-thin90.a2m.gz, have 64713 columns in 265 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1moq/nostruct-align/1moq.t2k-thin90.a2m.gz
# 1moq.t2k-thin90.a2m with 355 sequences, total weight= 257.859 avg weight= 0.726365 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30236 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1moq/info/1moq.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1moq/nostruct-align/1moq.t2k-thin90.a2m.gz, have 65079 columns in 266 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iomA/nostruct-align/1iomA.t2k-thin90.a2m.gz
# 1iomA.t2k-thin90.a2m with 223 sequences, total weight= 51.5802 avg weight= 0.231301 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iomA/info/1iomA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1iomA/nostruct-align/1iomA.t2k-thin90.a2m.gz, have 65453 columns in 267 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q92A/nostruct-align/1q92A.t2k-thin90.a2m.gz
# 1q92A.t2k-thin90.a2m with 39 sequences, total weight= 39 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2973 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q92A/info/1q92A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q92A/nostruct-align/1q92A.t2k-thin90.a2m.gz, have 65648 columns in 268 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xm3A/nostruct-align/1xm3A.t2k-thin90.a2m.gz
# 1xm3A.t2k-thin90.a2m with 687 sequences, total weight= 687 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14931 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xm3A/info/1xm3A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1xm3A/nostruct-align/1xm3A.t2k-thin90.a2m.gz, have 65892 columns in 269 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1ja9A/nostruct-align/1ja9A.t2k-thin90.a2m.gz
# 1ja9A.t2k-thin90.a2m with 1793 sequences, total weight= 1793 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22234 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1ja9A/info/1ja9A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1ja9A/nostruct-align/1ja9A.t2k-thin90.a2m.gz, have 66151 columns in 270 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1x9dA/nostruct-align/1x9dA.t2k-thin90.a2m.gz
# 1x9dA.t2k-thin90.a2m with 160 sequences, total weight= 30.9586 avg weight= 0.193491 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1x9dA/info/1x9dA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1x9dA/nostruct-align/1x9dA.t2k-thin90.a2m.gz, have 66602 columns in 271 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v2bA/nostruct-align/1v2bA.t2k-thin90.a2m.gz
# 1v2bA.t2k-thin90.a2m with 41 sequences, total weight= 21.3027 avg weight= 0.519579 34 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v2bA/info/1v2bA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v2bA/nostruct-align/1v2bA.t2k-thin90.a2m.gz, have 66750 columns in 272 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gp6A/nostruct-align/1gp6A.t2k-thin90.a2m.gz
# 1gp6A.t2k-thin90.a2m with 327 sequences, total weight= 221.11 avg weight= 0.676177 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30237 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gp6A/info/1gp6A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gp6A/nostruct-align/1gp6A.t2k-thin90.a2m.gz, have 67099 columns in 273 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gtvA/nostruct-align/1gtvA.t2k-thin90.a2m.gz
# 1gtvA.t2k-thin90.a2m with 173 sequences, total weight= 173 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24903 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gtvA/info/1gtvA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gtvA/nostruct-align/1gtvA.t2k-thin90.a2m.gz, have 67307 columns in 274 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bqcA/nostruct-align/1bqcA.t2k-thin90.a2m.gz
# 1bqcA.t2k-thin90.a2m with 130 sequences, total weight= 130 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21436 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bqcA/info/1bqcA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1b/1bqcA/nostruct-align/1bqcA.t2k-thin90.a2m.gz, have 67609 columns in 275 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nwzA/nostruct-align/1nwzA.t2k-thin90.a2m.gz
# 1nwzA.t2k-thin90.a2m with 6 sequences, total weight= 3.38215 avg weight= 0.563692 14 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nwzA/info/1nwzA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nwzA/nostruct-align/1nwzA.t2k-thin90.a2m.gz, have 67734 columns in 276 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wmqA/nostruct-align/1wmqA.t2k-thin90.a2m.gz
# 1wmqA.t2k-thin90.a2m with 5 sequences, total weight= 2.44796 avg weight= 0.489593 11 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wmqA/info/1wmqA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1wmqA/nostruct-align/1wmqA.t2k-thin90.a2m.gz, have 67877 columns in 277 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pinA/nostruct-align/1pinA.t2k-thin90.a2m.gz
# 1pinA.t2k-thin90.a2m with 285 sequences, total weight= 116.244 avg weight= 0.407874 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30055 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pinA/info/1pinA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pinA/nostruct-align/1pinA.t2k-thin90.a2m.gz, have 68030 columns in 278 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jlvA/nostruct-align/1jlvA.t2k-thin90.a2m.gz
# 1jlvA.t2k-thin90.a2m with 723 sequences, total weight= 723 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1188 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jlvA/info/1jlvA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jlvA/nostruct-align/1jlvA.t2k-thin90.a2m.gz, have 68237 columns in 279 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kcqA/nostruct-align/1kcqA.t2k-thin90.a2m.gz
# 1kcqA.t2k-thin90.a2m with 170 sequences, total weight= 170 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17954 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kcqA/info/1kcqA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kcqA/nostruct-align/1kcqA.t2k-thin90.a2m.gz, have 68340 columns in 280 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qh5A/nostruct-align/1qh5A.t2k-thin90.a2m.gz
# 1qh5A.t2k-thin90.a2m with 447 sequences, total weight= 447 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19939 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qh5A/info/1qh5A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qh5A/nostruct-align/1qh5A.t2k-thin90.a2m.gz, have 68600 columns in 281 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v0wA/nostruct-align/1v0wA.t2k-thin90.a2m.gz
# 1v0wA.t2k-thin90.a2m with 154 sequences, total weight= 154 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0475 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v0wA/info/1v0wA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v0wA/nostruct-align/1v0wA.t2k-thin90.a2m.gz, have 69096 columns in 282 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2i/2ilk/nostruct-align/2ilk.t2k-thin90.a2m.gz
# 2ilk.t2k-thin90.a2m with 41 sequences, total weight= 20.2112 avg weight= 0.492957 31 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2i/2ilk/info/2ilk.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/2i/2ilk/nostruct-align/2ilk.t2k-thin90.a2m.gz, have 69251 columns in 283 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h2eA/nostruct-align/1h2eA.t2k-thin90.a2m.gz
# 1h2eA.t2k-thin90.a2m with 283 sequences, total weight= 283 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12799 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h2eA/info/1h2eA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h2eA/nostruct-align/1h2eA.t2k-thin90.a2m.gz, have 69458 columns in 284 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r5yA/nostruct-align/1r5yA.t2k-thin90.a2m.gz
# 1r5yA.t2k-thin90.a2m with 553 sequences, total weight= 49.3048 avg weight= 0.0891588 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r5yA/info/1r5yA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r5yA/nostruct-align/1r5yA.t2k-thin90.a2m.gz, have 69819 columns in 285 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n13B/nostruct-align/1n13B.t2k-thin90.a2m.gz
# 1n13B.t2k-thin90.a2m with 13 sequences, total weight= 8.54887 avg weight= 0.657605 19 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n13B/info/1n13B.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n13B/nostruct-align/1n13B.t2k-thin90.a2m.gz, have 69931 columns in 286 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qusA/nostruct-align/1qusA.t2k-thin90.a2m.gz
# 1qusA.t2k-thin90.a2m with 91 sequences, total weight= 34.885 avg weight= 0.383352 45 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qusA/info/1qusA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qusA/nostruct-align/1qusA.t2k-thin90.a2m.gz, have 70243 columns in 287 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mc2A/nostruct-align/1mc2A.t2k-thin90.a2m.gz
# 1mc2A.t2k-thin90.a2m with 185 sequences, total weight= 16.6386 avg weight= 0.0899382 42 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mc2A/info/1mc2A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mc2A/nostruct-align/1mc2A.t2k-thin90.a2m.gz, have 70365 columns in 288 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vsrA/nostruct-align/1vsrA.t2k-thin90.a2m.gz
# 1vsrA.t2k-thin90.a2m with 15 sequences, total weight= 7.71965 avg weight= 0.514643 20 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vsrA/info/1vsrA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vsrA/nostruct-align/1vsrA.t2k-thin90.a2m.gz, have 70499 columns in 289 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ooeA/nostruct-align/1ooeA.t2k-thin90.a2m.gz
# 1ooeA.t2k-thin90.a2m with 810 sequences, total weight= 741.07 avg weight= 0.914901 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30158 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ooeA/info/1ooeA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1ooeA/nostruct-align/1ooeA.t2k-thin90.a2m.gz, have 70734 columns in 290 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1flmA/nostruct-align/1flmA.t2k-thin90.a2m.gz
# 1flmA.t2k-thin90.a2m with 8 sequences, total weight= 4.47678 avg weight= 0.559598 17 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1flmA/info/1flmA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1f/1flmA/nostruct-align/1flmA.t2k-thin90.a2m.gz, have 70856 columns in 291 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xg5A/nostruct-align/1xg5A.t2k-thin90.a2m.gz
# 1xg5A.t2k-thin90.a2m with 5923 sequences, total weight= 5923 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24642 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xg5A/info/1xg5A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1xg5A/nostruct-align/1xg5A.t2k-thin90.a2m.gz, have 71110 columns in 292 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gci/nostruct-align/1gci.t2k-thin90.a2m.gz
# 1gci.t2k-thin90.a2m with 386 sequences, total weight= 211.591 avg weight= 0.548163 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30533 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gci/info/1gci.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gci/nostruct-align/1gci.t2k-thin90.a2m.gz, have 71379 columns in 293 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vm0A/nostruct-align/1vm0A.t2k-thin90.a2m.gz
# 1vm0A.t2k-thin90.a2m with 5 sequences, total weight= 3.07002 avg weight= 0.614004 10 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vm0A/info/1vm0A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vm0A/nostruct-align/1vm0A.t2k-thin90.a2m.gz, have 71472 columns in 294 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1usgA/nostruct-align/1usgA.t2k-thin90.a2m.gz
# 1usgA.t2k-thin90.a2m with 421 sequences, total weight= 421 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05605 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1usgA/info/1usgA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1usgA/nostruct-align/1usgA.t2k-thin90.a2m.gz, have 71817 columns in 295 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1unqA/nostruct-align/1unqA.t2k-thin90.a2m.gz
# 1unqA.t2k-thin90.a2m with 320 sequences, total weight= 320 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13889 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1unqA/info/1unqA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1unqA/nostruct-align/1unqA.t2k-thin90.a2m.gz, have 71934 columns in 296 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m1nA/nostruct-align/1m1nA.t2k-thin90.a2m.gz
# 1m1nA.t2k-thin90.a2m with 227 sequences, total weight= 227 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28964 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m1nA/info/1m1nA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m1nA/nostruct-align/1m1nA.t2k-thin90.a2m.gz, have 72411 columns in 297 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1se8A/nostruct-align/1se8A.t2k-thin90.a2m.gz
# 1se8A.t2k-thin90.a2m with 219 sequences, total weight= 57.6539 avg weight= 0.26326 35 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1se8A/info/1se8A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1s/1se8A/nostruct-align/1se8A.t2k-thin90.a2m.gz, have 72624 columns in 298 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pot/nostruct-align/1pot.t2k-thin90.a2m.gz
# 1pot.t2k-thin90.a2m with 446 sequences, total weight= 446 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01073 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pot/info/1pot.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pot/nostruct-align/1pot.t2k-thin90.a2m.gz, have 72946 columns in 299 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w6sB/nostruct-align/1w6sB.t2k-thin90.a2m.gz
# 1w6sB.t2k-thin90.a2m with 9 sequences, total weight= 3.08553 avg weight= 0.342837 14 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w6sB/info/1w6sB.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1w6sB/nostruct-align/1w6sB.t2k-thin90.a2m.gz, have 73018 columns in 300 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wlgA/nostruct-align/1wlgA.t2k-thin90.a2m.gz
# 1wlgA.t2k-thin90.a2m with 229 sequences, total weight= 182.123 avg weight= 0.795299 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30093 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wlgA/info/1wlgA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1wlgA/nostruct-align/1wlgA.t2k-thin90.a2m.gz, have 73311 columns in 301 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r6jA/nostruct-align/1r6jA.t2k-thin90.a2m.gz
# 1r6jA.t2k-thin90.a2m with 217 sequences, total weight= 58.5013 avg weight= 0.269591 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r6jA/info/1r6jA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r6jA/nostruct-align/1r6jA.t2k-thin90.a2m.gz, have 73393 columns in 302 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iqcA/nostruct-align/1iqcA.t2k-thin90.a2m.gz
# 1iqcA.t2k-thin90.a2m with 83 sequences, total weight= 38.2548 avg weight= 0.460901 43 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iqcA/info/1iqcA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1iqcA/nostruct-align/1iqcA.t2k-thin90.a2m.gz, have 73701 columns in 303 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p9aG/nostruct-align/1p9aG.t2k-thin90.a2m.gz
# 1p9aG.t2k-thin90.a2m with 2878 sequences, total weight= 2878 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05711 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p9aG/info/1p9aG.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1p9aG/nostruct-align/1p9aG.t2k-thin90.a2m.gz, have 73967 columns in 304 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1z/1z57A/nostruct-align/1z57A.t2k-thin90.a2m.gz
# 1z57A.t2k-thin90.a2m with 8558 sequences, total weight= 8558 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0305 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1z/1z57A/info/1z57A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1z/1z57A/nostruct-align/1z57A.t2k-thin90.a2m.gz, have 74300 columns in 305 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1yg9A/nostruct-align/1yg9A.t2k-thin90.a2m.gz
# 1yg9A.t2k-thin90.a2m with 532 sequences, total weight= 107.542 avg weight= 0.202146 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30321 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1yg9A/info/1yg9A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1y/1yg9A/nostruct-align/1yg9A.t2k-thin90.a2m.gz, have 74630 columns in 306 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oewA/nostruct-align/1oewA.t2k-thin90.a2m.gz
# 1oewA.t2k-thin90.a2m with 359 sequences, total weight= 182.735 avg weight= 0.509011 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30454 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oewA/info/1oewA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oewA/nostruct-align/1oewA.t2k-thin90.a2m.gz, have 74958 columns in 307 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hz4A/nostruct-align/1hz4A.t2k-thin90.a2m.gz
# 1hz4A.t2k-thin90.a2m with 11 sequences, total weight= 7.31653 avg weight= 0.665139 15 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hz4A/info/1hz4A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hz4A/nostruct-align/1hz4A.t2k-thin90.a2m.gz, have 75324 columns in 308 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wer/nostruct-align/1wer.t2k-thin90.a2m.gz
# 1wer.t2k-thin90.a2m with 50 sequences, total weight= 50 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23644 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wer/info/1wer.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1wer/nostruct-align/1wer.t2k-thin90.a2m.gz, have 75648 columns in 309 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1ne9A/nostruct-align/1ne9A.t2k-thin90.a2m.gz
# 1ne9A.t2k-thin90.a2m with 79 sequences, total weight= 79 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11299 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1ne9A/info/1ne9A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1ne9A/nostruct-align/1ne9A.t2k-thin90.a2m.gz, have 75983 columns in 310 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qe3A/nostruct-align/1qe3A.t2k-thin90.a2m.gz
# 1qe3A.t2k-thin90.a2m with 374 sequences, total weight= 374 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14691 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qe3A/info/1qe3A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qe3A/nostruct-align/1qe3A.t2k-thin90.a2m.gz, have 76450 columns in 311 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qnaA/nostruct-align/1qnaA.t2k-thin90.a2m.gz
# 1qnaA.t2k-thin90.a2m with 62 sequences, total weight= 19.2023 avg weight= 0.309715 35 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qnaA/info/1qnaA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qnaA/nostruct-align/1qnaA.t2k-thin90.a2m.gz, have 76632 columns in 312 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wouA/nostruct-align/1wouA.t2k-thin90.a2m.gz
# 1wouA.t2k-thin90.a2m with 119 sequences, total weight= 97.127 avg weight= 0.816194 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wouA/info/1wouA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1wouA/nostruct-align/1wouA.t2k-thin90.a2m.gz, have 76751 columns in 313 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rp0A/nostruct-align/1rp0A.t2k-thin90.a2m.gz
# 1rp0A.t2k-thin90.a2m with 1141 sequences, total weight= 1141 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.841805 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rp0A/info/1rp0A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rp0A/nostruct-align/1rp0A.t2k-thin90.a2m.gz, have 77029 columns in 314 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3p/3proC/nostruct-align/3proC.t2k-thin90.a2m.gz
# 3proC.t2k-thin90.a2m with 25 sequences, total weight= 13.9925 avg weight= 0.559699 26 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3p/3proC/info/3proC.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/3p/3proC/nostruct-align/3proC.t2k-thin90.a2m.gz, have 77179 columns in 315 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ukfA/nostruct-align/1ukfA.t2k-thin90.a2m.gz
# 1ukfA.t2k-thin90.a2m with 5 sequences, total weight= 4.84633 avg weight= 0.969267 10 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ukfA/info/1ukfA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1ukfA/nostruct-align/1ukfA.t2k-thin90.a2m.gz, have 77367 columns in 316 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v7rA/nostruct-align/1v7rA.t2k-thin90.a2m.gz
# 1v7rA.t2k-thin90.a2m with 150 sequences, total weight= 22.0616 avg weight= 0.147077 45 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v7rA/info/1v7rA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v7rA/nostruct-align/1v7rA.t2k-thin90.a2m.gz, have 77553 columns in 317 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nz0A/nostruct-align/1nz0A.t2k-thin90.a2m.gz
# 1nz0A.t2k-thin90.a2m with 94 sequences, total weight= 48.6494 avg weight= 0.517547 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nz0A/info/1nz0A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nz0A/nostruct-align/1nz0A.t2k-thin90.a2m.gz, have 77662 columns in 318 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p4oA/nostruct-align/1p4oA.t2k-thin90.a2m.gz
# 1p4oA.t2k-thin90.a2m with 4314 sequences, total weight= 4314 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15208 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p4oA/info/1p4oA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1p4oA/nostruct-align/1p4oA.t2k-thin90.a2m.gz, have 77970 columns in 319 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1ajsA/nostruct-align/1ajsA.t2k-thin90.a2m.gz
# 1ajsA.t2k-thin90.a2m with 289 sequences, total weight= 289 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20284 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1ajsA/info/1ajsA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1a/1ajsA/nostruct-align/1ajsA.t2k-thin90.a2m.gz, have 78382 columns in 320 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1c3cA/nostruct-align/1c3cA.t2k-thin90.a2m.gz
# 1c3cA.t2k-thin90.a2m with 225 sequences, total weight= 139.495 avg weight= 0.619978 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30161 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1c3cA/info/1c3cA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1c/1c3cA/nostruct-align/1c3cA.t2k-thin90.a2m.gz, have 78806 columns in 321 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mzbA/nostruct-align/1mzbA.t2k-thin90.a2m.gz
# 1mzbA.t2k-thin90.a2m with 239 sequences, total weight= 124.058 avg weight= 0.519072 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30205 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mzbA/info/1mzbA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mzbA/nostruct-align/1mzbA.t2k-thin90.a2m.gz, have 78939 columns in 322 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wvgA/nostruct-align/1wvgA.t2k-thin90.a2m.gz
# 1wvgA.t2k-thin90.a2m with 1742 sequences, total weight= 1742 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16914 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wvgA/info/1wvgA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1wvgA/nostruct-align/1wvgA.t2k-thin90.a2m.gz, have 79291 columns in 323 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xq6A/nostruct-align/1xq6A.t2k-thin90.a2m.gz
# 1xq6A.t2k-thin90.a2m with 720 sequences, total weight= 720 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.968058 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xq6A/info/1xq6A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1xq6A/nostruct-align/1xq6A.t2k-thin90.a2m.gz, have 79544 columns in 324 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1b6a/nostruct-align/1b6a.t2k-thin90.a2m.gz
# 1b6a.t2k-thin90.a2m with 279 sequences, total weight= 175.075 avg weight= 0.627509 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30093 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1b6a/info/1b6a.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1b/1b6a/nostruct-align/1b6a.t2k-thin90.a2m.gz, have 79899 columns in 325 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1x8gA/nostruct-align/1x8gA.t2k-thin90.a2m.gz
# 1x8gA.t2k-thin90.a2m with 336 sequences, total weight= 336 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.06087 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1x8gA/info/1x8gA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1x8gA/nostruct-align/1x8gA.t2k-thin90.a2m.gz, have 80123 columns in 326 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1c1kA/nostruct-align/1c1kA.t2k-thin90.a2m.gz
# 1c1kA.t2k-thin90.a2m with 6 sequences, total weight= 4.32128 avg weight= 0.720213 14 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1c1kA/info/1c1kA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1c/1c1kA/nostruct-align/1c1kA.t2k-thin90.a2m.gz, have 80340 columns in 327 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3v/3vub/nostruct-align/3vub.t2k-thin90.a2m.gz
# 3vub.t2k-thin90.a2m with 6 sequences, total weight= 5.28421 avg weight= 0.880701 14 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3v/3vub/info/3vub.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/3v/3vub/nostruct-align/3vub.t2k-thin90.a2m.gz, have 80441 columns in 328 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2b/2baa/nostruct-align/2baa.t2k-thin90.a2m.gz
# 2baa.t2k-thin90.a2m with 147 sequences, total weight= 21.0227 avg weight= 0.143012 33 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2b/2baa/info/2baa.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/2b/2baa/nostruct-align/2baa.t2k-thin90.a2m.gz, have 80684 columns in 329 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xsqA/nostruct-align/1xsqA.t2k-thin90.a2m.gz
# 1xsqA.t2k-thin90.a2m with 54 sequences, total weight= 23.4068 avg weight= 0.43346 40 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xsqA/info/1xsqA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1xsqA/nostruct-align/1xsqA.t2k-thin90.a2m.gz, have 80838 columns in 330 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oruA/nostruct-align/1oruA.t2k-thin90.a2m.gz
# 1oruA.t2k-thin90.a2m with 15 sequences, total weight= 14.9415 avg weight= 0.9961 11 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oruA/info/1oruA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oruA/nostruct-align/1oruA.t2k-thin90.a2m.gz, have 81020 columns in 331 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cqxA/nostruct-align/1cqxA.t2k-thin90.a2m.gz
# 1cqxA.t2k-thin90.a2m with 559 sequences, total weight= 559 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13902 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cqxA/info/1cqxA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cqxA/nostruct-align/1cqxA.t2k-thin90.a2m.gz, have 81423 columns in 332 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1txlA/nostruct-align/1txlA.t2k-thin90.a2m.gz
# 1txlA.t2k-thin90.a2m with 18 sequences, total weight= 5.63798 avg weight= 0.313221 20 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1txlA/info/1txlA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1txlA/nostruct-align/1txlA.t2k-thin90.a2m.gz, have 81611 columns in 333 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ud9A/nostruct-align/1ud9A.t2k-thin90.a2m.gz
# 1ud9A.t2k-thin90.a2m with 103 sequences, total weight= 103 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26862 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ud9A/info/1ud9A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1ud9A/nostruct-align/1ud9A.t2k-thin90.a2m.gz, have 81853 columns in 334 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t82A/nostruct-align/1t82A.t2k-thin90.a2m.gz
# 1t82A.t2k-thin90.a2m with 17 sequences, total weight= 9.02422 avg weight= 0.530836 23 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t82A/info/1t82A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t82A/nostruct-align/1t82A.t2k-thin90.a2m.gz, have 81996 columns in 335 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m1qA/nostruct-align/1m1qA.t2k-thin90.a2m.gz
# 1m1qA.t2k-thin90.a2m with 22 sequences, total weight= 22 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19536 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m1qA/info/1m1qA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m1qA/nostruct-align/1m1qA.t2k-thin90.a2m.gz, have 82086 columns in 336 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nnxA/nostruct-align/1nnxA.t2k-thin90.a2m.gz
# 1nnxA.t2k-thin90.a2m with 25 sequences, total weight= 12.1938 avg weight= 0.48775 28 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nnxA/info/1nnxA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nnxA/nostruct-align/1nnxA.t2k-thin90.a2m.gz, have 82179 columns in 337 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fm0D/nostruct-align/1fm0D.t2k-thin90.a2m.gz
# 1fm0D.t2k-thin90.a2m with 119 sequences, total weight= 39.3672 avg weight= 0.330817 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fm0D/info/1fm0D.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fm0D/nostruct-align/1fm0D.t2k-thin90.a2m.gz, have 82260 columns in 338 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v7wA/nostruct-align/1v7wA.t2k-thin90.a2m.gz
# 1v7wA.t2k-thin90.a2m with 89 sequences, total weight= 89 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16944 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v7wA/info/1v7wA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v7wA/nostruct-align/1v7wA.t2k-thin90.a2m.gz, have 83039 columns in 339 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hd2A/nostruct-align/1hd2A.t2k-thin90.a2m.gz
# 1hd2A.t2k-thin90.a2m with 447 sequences, total weight= 115.117 avg weight= 0.257532 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3033 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hd2A/info/1hd2A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hd2A/nostruct-align/1hd2A.t2k-thin90.a2m.gz, have 83200 columns in 340 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pa1A/nostruct-align/1pa1A.t2k-thin90.a2m.gz
# 1pa1A.t2k-thin90.a2m with 336 sequences, total weight= 336 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25141 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pa1A/info/1pa1A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pa1A/nostruct-align/1pa1A.t2k-thin90.a2m.gz, have 83502 columns in 341 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1euwA/nostruct-align/1euwA.t2k-thin90.a2m.gz
# 1euwA.t2k-thin90.a2m with 274 sequences, total weight= 126.541 avg weight= 0.46183 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1euwA/info/1euwA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1euwA/nostruct-align/1euwA.t2k-thin90.a2m.gz, have 83638 columns in 342 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1ah7/nostruct-align/1ah7.t2k-thin90.a2m.gz
# 1ah7.t2k-thin90.a2m with 20 sequences, total weight= 17.5643 avg weight= 0.878217 21 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1ah7/info/1ah7.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1a/1ah7/nostruct-align/1ah7.t2k-thin90.a2m.gz, have 83883 columns in 343 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f6bA/nostruct-align/1f6bA.t2k-thin90.a2m.gz
# 1f6bA.t2k-thin90.a2m with 702 sequences, total weight= 702 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15396 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f6bA/info/1f6bA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f6bA/nostruct-align/1f6bA.t2k-thin90.a2m.gz, have 84059 columns in 344 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vqsA/nostruct-align/1vqsA.t2k-thin90.a2m.gz
# 1vqsA.t2k-thin90.a2m with 83 sequences, total weight= 69.6824 avg weight= 0.839548 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vqsA/info/1vqsA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vqsA/nostruct-align/1vqsA.t2k-thin90.a2m.gz, have 84169 columns in 345 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qksA/nostruct-align/1qksA.t2k-thin90.a2m.gz
# 1qksA.t2k-thin90.a2m with 250 sequences, total weight= 84.1909 avg weight= 0.336764 36 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qksA/info/1qksA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qksA/nostruct-align/1qksA.t2k-thin90.a2m.gz, have 84728 columns in 346 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h6fA/nostruct-align/1h6fA.t2k-thin90.a2m.gz
# 1h6fA.t2k-thin90.a2m with 93 sequences, total weight= 15.9342 avg weight= 0.171335 35 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h6fA/info/1h6fA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h6fA/nostruct-align/1h6fA.t2k-thin90.a2m.gz, have 84912 columns in 347 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q7lA/nostruct-align/1q7lA.t2k-thin90.a2m.gz
# 1q7lA.t2k-thin90.a2m with 355 sequences, total weight= 355 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1942 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q7lA/info/1q7lA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q7lA/nostruct-align/1q7lA.t2k-thin90.a2m.gz, have 85104 columns in 348 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1te2A/nostruct-align/1te2A.t2k-thin90.a2m.gz
# 1te2A.t2k-thin90.a2m with 821 sequences, total weight= 821 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07869 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1te2A/info/1te2A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1te2A/nostruct-align/1te2A.t2k-thin90.a2m.gz, have 85322 columns in 349 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q0pA/nostruct-align/1q0pA.t2k-thin90.a2m.gz
# 1q0pA.t2k-thin90.a2m with 353 sequences, total weight= 353 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24163 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q0pA/info/1q0pA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q0pA/nostruct-align/1q0pA.t2k-thin90.a2m.gz, have 85514 columns in 350 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xe0A/nostruct-align/1xe0A.t2k-thin90.a2m.gz
# 1xe0A.t2k-thin90.a2m with 35 sequences, total weight= 9.0712 avg weight= 0.259177 23 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xe0A/info/1xe0A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1xe0A/nostruct-align/1xe0A.t2k-thin90.a2m.gz, have 85622 columns in 351 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vziA/nostruct-align/1vziA.t2k-thin90.a2m.gz
# 1vziA.t2k-thin90.a2m with 29 sequences, total weight= 11.1025 avg weight= 0.382844 25 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vziA/info/1vziA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vziA/nostruct-align/1vziA.t2k-thin90.a2m.gz, have 85747 columns in 352 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vybA/nostruct-align/1vybA.t2k-thin90.a2m.gz
# 1vybA.t2k-thin90.a2m with 290 sequences, total weight= 290 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15835 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vybA/info/1vybA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vybA/nostruct-align/1vybA.t2k-thin90.a2m.gz, have 85983 columns in 353 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uptB/nostruct-align/1uptB.t2k-thin90.a2m.gz
# 1uptB.t2k-thin90.a2m with 4 sequences, total weight= 3.47726 avg weight= 0.869315 10 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uptB/info/1uptB.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uptB/nostruct-align/1uptB.t2k-thin90.a2m.gz, have 86041 columns in 354 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o4vA/nostruct-align/1o4vA.t2k-thin90.a2m.gz
# 1o4vA.t2k-thin90.a2m with 159 sequences, total weight= 19.0418 avg weight= 0.11976 38 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o4vA/info/1o4vA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o4vA/nostruct-align/1o4vA.t2k-thin90.a2m.gz, have 86210 columns in 355 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gq8A/nostruct-align/1gq8A.t2k-thin90.a2m.gz
# 1gq8A.t2k-thin90.a2m with 178 sequences, total weight= 35.0041 avg weight= 0.196652 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gq8A/info/1gq8A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gq8A/nostruct-align/1gq8A.t2k-thin90.a2m.gz, have 86529 columns in 356 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pz4A/nostruct-align/1pz4A.t2k-thin90.a2m.gz
# 1pz4A.t2k-thin90.a2m with 39 sequences, total weight= 21.806 avg weight= 0.559129 31 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pz4A/info/1pz4A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pz4A/nostruct-align/1pz4A.t2k-thin90.a2m.gz, have 86642 columns in 357 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2b/2bjiA/nostruct-align/2bjiA.t2k-thin90.a2m.gz
# 2bjiA.t2k-thin90.a2m with 554 sequences, total weight= 554 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25547 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2b/2bjiA/info/2bjiA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/2b/2bjiA/nostruct-align/2bjiA.t2k-thin90.a2m.gz, have 86916 columns in 358 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qmvA/nostruct-align/1qmvA.t2k-thin90.a2m.gz
# 1qmvA.t2k-thin90.a2m with 307 sequences, total weight= 134.019 avg weight= 0.436543 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30097 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qmvA/info/1qmvA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qmvA/nostruct-align/1qmvA.t2k-thin90.a2m.gz, have 87113 columns in 359 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qgiA/nostruct-align/1qgiA.t2k-thin90.a2m.gz
# 1qgiA.t2k-thin90.a2m with 17 sequences, total weight= 10.9948 avg weight= 0.64675 18 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qgiA/info/1qgiA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qgiA/nostruct-align/1qgiA.t2k-thin90.a2m.gz, have 87372 columns in 360 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sfsA/nostruct-align/1sfsA.t2k-thin90.a2m.gz
# 1sfsA.t2k-thin90.a2m with 4 sequences, total weight= 4 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2397 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sfsA/info/1sfsA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sfsA/nostruct-align/1sfsA.t2k-thin90.a2m.gz, have 87585 columns in 361 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1ru4A/nostruct-align/1ru4A.t2k-thin90.a2m.gz
# 1ru4A.t2k-thin90.a2m with 246 sequences, total weight= 246 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.982651 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1ru4A/info/1ru4A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1ru4A/nostruct-align/1ru4A.t2k-thin90.a2m.gz, have 87985 columns in 362 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m33A/nostruct-align/1m33A.t2k-thin90.a2m.gz
# 1m33A.t2k-thin90.a2m with 1102 sequences, total weight= 1102 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.835122 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m33A/info/1m33A.stride-mixed.CB-burial-12-7
WARNING: skipping c, since it is lower case.
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m33A/nostruct-align/1m33A.t2k-thin90.a2m.gz, have 88240 columns in 363 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t4hA/nostruct-align/1t4hA.t2k-thin90.a2m.gz
# 1t4hA.t2k-thin90.a2m with 8073 sequences, total weight= 8073 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16985 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t4hA/info/1t4hA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t4hA/nostruct-align/1t4hA.t2k-thin90.a2m.gz, have 88510 columns in 364 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1igqA/nostruct-align/1igqA.t2k-thin90.a2m.gz
# 1igqA.t2k-thin90.a2m with 5 sequences, total weight= 3.12428 avg weight= 0.624856 11 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1igqA/info/1igqA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1igqA/nostruct-align/1igqA.t2k-thin90.a2m.gz, have 88564 columns in 365 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mkkA/nostruct-align/1mkkA.t2k-thin90.a2m.gz
# 1mkkA.t2k-thin90.a2m with 32 sequences, total weight= 14.3229 avg weight= 0.447592 32 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mkkA/info/1mkkA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mkkA/nostruct-align/1mkkA.t2k-thin90.a2m.gz, have 88657 columns in 366 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pyfA/nostruct-align/1pyfA.t2k-thin90.a2m.gz
# 1pyfA.t2k-thin90.a2m with 1805 sequences, total weight= 1805 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22992 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pyfA/info/1pyfA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pyfA/nostruct-align/1pyfA.t2k-thin90.a2m.gz, have 88968 columns in 367 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rxqA/nostruct-align/1rxqA.t2k-thin90.a2m.gz
# 1rxqA.t2k-thin90.a2m with 23 sequences, total weight= 23 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12166 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rxqA/info/1rxqA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rxqA/nostruct-align/1rxqA.t2k-thin90.a2m.gz, have 89142 columns in 368 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1ql0A/nostruct-align/1ql0A.t2k-thin90.a2m.gz
# 1ql0A.t2k-thin90.a2m with 66 sequences, total weight= 66 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20385 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1ql0A/info/1ql0A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1ql0A/nostruct-align/1ql0A.t2k-thin90.a2m.gz, have 89383 columns in 369 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qnrA/nostruct-align/1qnrA.t2k-thin90.a2m.gz
# 1qnrA.t2k-thin90.a2m with 97 sequences, total weight= 97 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.966112 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qnrA/info/1qnrA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qnrA/nostruct-align/1qnrA.t2k-thin90.a2m.gz, have 89727 columns in 370 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1u07A/nostruct-align/1u07A.t2k-thin90.a2m.gz
# 1u07A.t2k-thin90.a2m with 181 sequences, total weight= 87.583 avg weight= 0.483884 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30033 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1u07A/info/1u07A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1u07A/nostruct-align/1u07A.t2k-thin90.a2m.gz, have 89817 columns in 371 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sh8A/nostruct-align/1sh8A.t2k-thin90.a2m.gz
# 1sh8A.t2k-thin90.a2m with 111 sequences, total weight= 111 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14662 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sh8A/info/1sh8A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sh8A/nostruct-align/1sh8A.t2k-thin90.a2m.gz, have 89970 columns in 372 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j71A/nostruct-align/1j71A.t2k-thin90.a2m.gz
# 1j71A.t2k-thin90.a2m with 300 sequences, total weight= 123.767 avg weight= 0.412558 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30281 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j71A/info/1j71A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j71A/nostruct-align/1j71A.t2k-thin90.a2m.gz, have 90304 columns in 373 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tr0A/nostruct-align/1tr0A.t2k-thin90.a2m.gz
# 1tr0A.t2k-thin90.a2m with 42 sequences, total weight= 40.8932 avg weight= 0.973648 27 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tr0A/info/1tr0A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tr0A/nostruct-align/1tr0A.t2k-thin90.a2m.gz, have 90410 columns in 374 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h32A/nostruct-align/1h32A.t2k-thin90.a2m.gz
# 1h32A.t2k-thin90.a2m with 36 sequences, total weight= 36 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26174 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h32A/info/1h32A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h32A/nostruct-align/1h32A.t2k-thin90.a2m.gz, have 90671 columns in 375 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bg6/nostruct-align/1bg6.t2k-thin90.a2m.gz
# 1bg6.t2k-thin90.a2m with 410 sequences, total weight= 410 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.980066 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bg6/info/1bg6.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1b/1bg6/nostruct-align/1bg6.t2k-thin90.a2m.gz, have 91020 columns in 376 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1idpA/nostruct-align/1idpA.t2k-thin90.a2m.gz
# 1idpA.t2k-thin90.a2m with 6 sequences, total weight= 2.47098 avg weight= 0.41183 10 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1idpA/info/1idpA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1idpA/nostruct-align/1idpA.t2k-thin90.a2m.gz, have 91167 columns in 377 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1u5xA/nostruct-align/1u5xA.t2k-thin90.a2m.gz
# 1u5xA.t2k-thin90.a2m with 67 sequences, total weight= 24.8529 avg weight= 0.370938 39 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1u5xA/info/1u5xA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1u5xA/nostruct-align/1u5xA.t2k-thin90.a2m.gz, have 91297 columns in 378 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kmvA/nostruct-align/1kmvA.t2k-thin90.a2m.gz
# 1kmvA.t2k-thin90.a2m with 199 sequences, total weight= 100.229 avg weight= 0.503662 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30087 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kmvA/info/1kmvA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kmvA/nostruct-align/1kmvA.t2k-thin90.a2m.gz, have 91482 columns in 379 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oi6A/nostruct-align/1oi6A.t2k-thin90.a2m.gz
# 1oi6A.t2k-thin90.a2m with 215 sequences, total weight= 29.3312 avg weight= 0.136424 44 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oi6A/info/1oi6A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oi6A/nostruct-align/1oi6A.t2k-thin90.a2m.gz, have 91684 columns in 380 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uq5A/nostruct-align/1uq5A.t2k-thin90.a2m.gz
# 1uq5A.t2k-thin90.a2m with 86 sequences, total weight= 56.6818 avg weight= 0.659091 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uq5A/info/1uq5A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uq5A/nostruct-align/1uq5A.t2k-thin90.a2m.gz, have 91947 columns in 381 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oxjA/nostruct-align/1oxjA.t2k-thin90.a2m.gz
# 1oxjA.t2k-thin90.a2m with 14 sequences, total weight= 9.72502 avg weight= 0.694644 15 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oxjA/info/1oxjA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oxjA/nostruct-align/1oxjA.t2k-thin90.a2m.gz, have 92117 columns in 382 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nxmA/nostruct-align/1nxmA.t2k-thin90.a2m.gz
# 1nxmA.t2k-thin90.a2m with 178 sequences, total weight= 20.597 avg weight= 0.115714 38 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nxmA/info/1nxmA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nxmA/nostruct-align/1nxmA.t2k-thin90.a2m.gz, have 92311 columns in 383 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s9rA/nostruct-align/1s9rA.t2k-thin90.a2m.gz
# 1s9rA.t2k-thin90.a2m with 134 sequences, total weight= 118.004 avg weight= 0.880623 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s9rA/info/1s9rA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1s/1s9rA/nostruct-align/1s9rA.t2k-thin90.a2m.gz, have 92720 columns in 384 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i52A/nostruct-align/1i52A.t2k-thin90.a2m.gz
# 1i52A.t2k-thin90.a2m with 243 sequences, total weight= 243 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12186 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i52A/info/1i52A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i52A/nostruct-align/1i52A.t2k-thin90.a2m.gz, have 92945 columns in 385 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p5vB/nostruct-align/1p5vB.t2k-thin90.a2m.gz
# 1p5vB.t2k-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.614906 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p5vB/info/1p5vB.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1p5vB/nostruct-align/1p5vB.t2k-thin90.a2m.gz, have 93081 columns in 386 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nq7A/nostruct-align/1nq7A.t2k-thin90.a2m.gz
# 1nq7A.t2k-thin90.a2m with 245 sequences, total weight= 245 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16993 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nq7A/info/1nq7A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nq7A/nostruct-align/1nq7A.t2k-thin90.a2m.gz, have 93325 columns in 387 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1is3A/nostruct-align/1is3A.t2k-thin90.a2m.gz
# 1is3A.t2k-thin90.a2m with 144 sequences, total weight= 65.5589 avg weight= 0.45527 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30029 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1is3A/info/1is3A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1is3A/nostruct-align/1is3A.t2k-thin90.a2m.gz, have 93459 columns in 388 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l3kA/nostruct-align/1l3kA.t2k-thin90.a2m.gz
# 1l3kA.t2k-thin90.a2m with 972 sequences, total weight= 972 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21248 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l3kA/info/1l3kA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1l/1l3kA/nostruct-align/1l3kA.t2k-thin90.a2m.gz, have 93622 columns in 389 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nkr/nostruct-align/1nkr.t2k-thin90.a2m.gz
# 1nkr.t2k-thin90.a2m with 213 sequences, total weight= 213 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10424 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nkr/info/1nkr.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nkr/nostruct-align/1nkr.t2k-thin90.a2m.gz, have 93817 columns in 390 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vh4A/nostruct-align/1vh4A.t2k-thin90.a2m.gz
# 1vh4A.t2k-thin90.a2m with 192 sequences, total weight= 192 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24716 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vh4A/info/1vh4A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vh4A/nostruct-align/1vh4A.t2k-thin90.a2m.gz, have 94227 columns in 391 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o97C/nostruct-align/1o97C.t2k-thin90.a2m.gz
# 1o97C.t2k-thin90.a2m with 135 sequences, total weight= 61.4533 avg weight= 0.45521 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o97C/info/1o97C.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o97C/nostruct-align/1o97C.t2k-thin90.a2m.gz, have 94478 columns in 392 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tyjA/nostruct-align/1tyjA.t2k-thin90.a2m.gz
# 1tyjA.t2k-thin90.a2m with 12 sequences, total weight= 5.36117 avg weight= 0.446764 18 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tyjA/info/1tyjA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tyjA/nostruct-align/1tyjA.t2k-thin90.a2m.gz, have 94648 columns in 393 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vd6A/nostruct-align/1vd6A.t2k-thin90.a2m.gz
# 1vd6A.t2k-thin90.a2m with 423 sequences, total weight= 423 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20765 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vd6A/info/1vd6A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vd6A/nostruct-align/1vd6A.t2k-thin90.a2m.gz, have 94866 columns in 394 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vpmA/nostruct-align/1vpmA.t2k-thin90.a2m.gz
# 1vpmA.t2k-thin90.a2m with 300 sequences, total weight= 300 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24798 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vpmA/info/1vpmA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vpmA/nostruct-align/1vpmA.t2k-thin90.a2m.gz, have 95021 columns in 395 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k77A/nostruct-align/1k77A.t2k-thin90.a2m.gz
# 1k77A.t2k-thin90.a2m with 132 sequences, total weight= 132 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21444 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k77A/info/1k77A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k77A/nostruct-align/1k77A.t2k-thin90.a2m.gz, have 95281 columns in 396 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rzhM/nostruct-align/1rzhM.t2k-thin90.a2m.gz
# 1rzhM.t2k-thin90.a2m with 170 sequences, total weight= 15.489 avg weight= 0.0911118 30 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rzhM/info/1rzhM.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rzhM/nostruct-align/1rzhM.t2k-thin90.a2m.gz, have 95582 columns in 397 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rwzA/nostruct-align/1rwzA.t2k-thin90.a2m.gz
# 1rwzA.t2k-thin90.a2m with 69 sequences, total weight= 36.8244 avg weight= 0.533686 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rwzA/info/1rwzA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rwzA/nostruct-align/1rwzA.t2k-thin90.a2m.gz, have 95826 columns in 398 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iu8A/nostruct-align/1iu8A.t2k-thin90.a2m.gz
# 1iu8A.t2k-thin90.a2m with 52 sequences, total weight= 24.6114 avg weight= 0.473296 38 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iu8A/info/1iu8A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1iu8A/nostruct-align/1iu8A.t2k-thin90.a2m.gz, have 96032 columns in 399 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jh6A/nostruct-align/1jh6A.t2k-thin90.a2m.gz
# 1jh6A.t2k-thin90.a2m with 3 sequences, total weight= 3 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03635 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jh6A/info/1jh6A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jh6A/nostruct-align/1jh6A.t2k-thin90.a2m.gz, have 96213 columns in 400 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nykA/nostruct-align/1nykA.t2k-thin90.a2m.gz
# 1nykA.t2k-thin90.a2m with 279 sequences, total weight= 279 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27025 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nykA/info/1nykA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nykA/nostruct-align/1nykA.t2k-thin90.a2m.gz, have 96369 columns in 401 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w0nA/nostruct-align/1w0nA.t2k-thin90.a2m.gz
# 1w0nA.t2k-thin90.a2m with 4 sequences, total weight= 2.89737 avg weight= 0.724341 11 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w0nA/info/1w0nA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1w0nA/nostruct-align/1w0nA.t2k-thin90.a2m.gz, have 96489 columns in 402 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1u7lA/nostruct-align/1u7lA.t2k-thin90.a2m.gz
# 1u7lA.t2k-thin90.a2m with 47 sequences, total weight= 19.404 avg weight= 0.412851 32 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1u7lA/info/1u7lA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1u7lA/nostruct-align/1u7lA.t2k-thin90.a2m.gz, have 96853 columns in 403 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xgkA/nostruct-align/1xgkA.t2k-thin90.a2m.gz
# 1xgkA.t2k-thin90.a2m with 244 sequences, total weight= 244 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00889 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xgkA/info/1xgkA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1xgkA/nostruct-align/1xgkA.t2k-thin90.a2m.gz, have 97178 columns in 404 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q8dA/nostruct-align/1q8dA.t2k-thin90.a2m.gz
# 1q8dA.t2k-thin90.a2m with 24 sequences, total weight= 7.17686 avg weight= 0.299036 25 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q8dA/info/1q8dA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q8dA/nostruct-align/1q8dA.t2k-thin90.a2m.gz, have 97278 columns in 405 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fsgA/nostruct-align/1fsgA.t2k-thin90.a2m.gz
# 1fsgA.t2k-thin90.a2m with 294 sequences, total weight= 178.604 avg weight= 0.607497 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fsgA/info/1fsgA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fsgA/nostruct-align/1fsgA.t2k-thin90.a2m.gz, have 97511 columns in 406 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1ts9A/nostruct-align/1ts9A.t2k-thin90.a2m.gz
# 1ts9A.t2k-thin90.a2m with 46 sequences, total weight= 25.3722 avg weight= 0.551569 34 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1ts9A/info/1ts9A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1ts9A/nostruct-align/1ts9A.t2k-thin90.a2m.gz, have 97609 columns in 407 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kshB/nostruct-align/1kshB.t2k-thin90.a2m.gz
# 1kshB.t2k-thin90.a2m with 15 sequences, total weight= 6.90416 avg weight= 0.460277 19 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kshB/info/1kshB.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kshB/nostruct-align/1kshB.t2k-thin90.a2m.gz, have 97751 columns in 408 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1y7yA/nostruct-align/1y7yA.t2k-thin90.a2m.gz
# 1y7yA.t2k-thin90.a2m with 956 sequences, total weight= 72.8279 avg weight= 0.0761798 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1y7yA/info/1y7yA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1y/1y7yA/nostruct-align/1y7yA.t2k-thin90.a2m.gz, have 97820 columns in 409 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a4iA/nostruct-align/1a4iA.t2k-thin90.a2m.gz
# 1a4iA.t2k-thin90.a2m with 182 sequences, total weight= 21.3241 avg weight= 0.117166 43 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1a4iA/info/1a4iA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1a/1a4iA/nostruct-align/1a4iA.t2k-thin90.a2m.gz, have 98105 columns in 410 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jubA/nostruct-align/1jubA.t2k-thin90.a2m.gz
# 1jubA.t2k-thin90.a2m with 243 sequences, total weight= 243 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23674 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jubA/info/1jubA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jubA/nostruct-align/1jubA.t2k-thin90.a2m.gz, have 98416 columns in 411 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oflA/nostruct-align/1oflA.t2k-thin90.a2m.gz
# 1oflA.t2k-thin90.a2m with 29 sequences, total weight= 29 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08628 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oflA/info/1oflA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oflA/nostruct-align/1oflA.t2k-thin90.a2m.gz, have 98897 columns in 412 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wcv1/nostruct-align/1wcv1.t2k-thin90.a2m.gz
# 1wcv1.t2k-thin90.a2m with 1852 sequences, total weight= 1852 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00985 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wcv1/info/1wcv1.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1wcv1/nostruct-align/1wcv1.t2k-thin90.a2m.gz, have 99140 columns in 413 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vhnA/nostruct-align/1vhnA.t2k-thin90.a2m.gz
# 1vhnA.t2k-thin90.a2m with 307 sequences, total weight= 307 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27712 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vhnA/info/1vhnA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vhnA/nostruct-align/1vhnA.t2k-thin90.a2m.gz, have 99445 columns in 414 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1c5eA/nostruct-align/1c5eA.t2k-thin90.a2m.gz
# 1c5eA.t2k-thin90.a2m with 5 sequences, total weight= 3.27695 avg weight= 0.65539 11 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1c5eA/info/1c5eA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1c/1c5eA/nostruct-align/1c5eA.t2k-thin90.a2m.gz, have 99540 columns in 415 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rwjA/nostruct-align/1rwjA.t2k-thin90.a2m.gz
# 1rwjA.t2k-thin90.a2m with 26 sequences, total weight= 8.21365 avg weight= 0.315909 29 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rwjA/info/1rwjA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rwjA/nostruct-align/1rwjA.t2k-thin90.a2m.gz, have 99621 columns in 416 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p3dA/nostruct-align/1p3dA.t2k-thin90.a2m.gz
# 1p3dA.t2k-thin90.a2m with 543 sequences, total weight= 543 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13819 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p3dA/info/1p3dA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1p3dA/nostruct-align/1p3dA.t2k-thin90.a2m.gz, have 100084 columns in 417 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1x8qA/nostruct-align/1x8qA.t2k-thin90.a2m.gz
# 1x8qA.t2k-thin90.a2m with 21 sequences, total weight= 18.5992 avg weight= 0.885678 21 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1x8qA/info/1x8qA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1x8qA/nostruct-align/1x8qA.t2k-thin90.a2m.gz, have 100268 columns in 418 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2s/2sak/nostruct-align/2sak.t2k-thin90.a2m.gz
# 2sak.t2k-thin90.a2m with 4 sequences, total weight= 4 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09305 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2s/2sak/info/2sak.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/2s/2sak/nostruct-align/2sak.t2k-thin90.a2m.gz, have 100389 columns in 419 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d0qA/nostruct-align/1d0qA.t2k-thin90.a2m.gz
# 1d0qA.t2k-thin90.a2m with 134 sequences, total weight= 24.6137 avg weight= 0.183685 43 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d0qA/info/1d0qA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1d/1d0qA/nostruct-align/1d0qA.t2k-thin90.a2m.gz, have 100491 columns in 420 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xe7A/nostruct-align/1xe7A.t2k-thin90.a2m.gz
# 1xe7A.t2k-thin90.a2m with 51 sequences, total weight= 22.7877 avg weight= 0.446819 32 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xe7A/info/1xe7A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1xe7A/nostruct-align/1xe7A.t2k-thin90.a2m.gz, have 100677 columns in 421 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1npyA/nostruct-align/1npyA.t2k-thin90.a2m.gz
# 1npyA.t2k-thin90.a2m with 206 sequences, total weight= 70.9251 avg weight= 0.344296 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30038 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1npyA/info/1npyA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1npyA/nostruct-align/1npyA.t2k-thin90.a2m.gz, have 100946 columns in 422 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2b/2bl8A/nostruct-align/2bl8A.t2k-thin90.a2m.gz
# 2bl8A.t2k-thin90.a2m with 9 sequences, total weight= 4.30921 avg weight= 0.478801 16 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2b/2bl8A/info/2bl8A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/2b/2bl8A/nostruct-align/2bl8A.t2k-thin90.a2m.gz, have 101039 columns in 423 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fs7A/nostruct-align/1fs7A.t2k-thin90.a2m.gz
# 1fs7A.t2k-thin90.a2m with 20 sequences, total weight= 11.026 avg weight= 0.5513 22 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fs7A/info/1fs7A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fs7A/nostruct-align/1fs7A.t2k-thin90.a2m.gz, have 101510 columns in 424 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eazA/nostruct-align/1eazA.t2k-thin90.a2m.gz
# 1eazA.t2k-thin90.a2m with 310 sequences, total weight= 310 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.06336 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eazA/info/1eazA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1eazA/nostruct-align/1eazA.t2k-thin90.a2m.gz, have 101613 columns in 425 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pg6A/nostruct-align/1pg6A.t2k-thin90.a2m.gz
# 1pg6A.t2k-thin90.a2m with 80 sequences, total weight= 59.1802 avg weight= 0.739753 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pg6A/info/1pg6A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pg6A/nostruct-align/1pg6A.t2k-thin90.a2m.gz, have 101829 columns in 426 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uj8A/nostruct-align/1uj8A.t2k-thin90.a2m.gz
# 1uj8A.t2k-thin90.a2m with 49 sequences, total weight= 8.67882 avg weight= 0.177119 26 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uj8A/info/1uj8A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uj8A/nostruct-align/1uj8A.t2k-thin90.a2m.gz, have 101902 columns in 427 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1npsA/nostruct-align/1npsA.t2k-thin90.a2m.gz
# 1npsA.t2k-thin90.a2m with 101 sequences, total weight= 62.1706 avg weight= 0.61555 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1npsA/info/1npsA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1npsA/nostruct-align/1npsA.t2k-thin90.a2m.gz, have 101990 columns in 428 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1ypqA/nostruct-align/1ypqA.t2k-thin90.a2m.gz
# 1ypqA.t2k-thin90.a2m with 923 sequences, total weight= 923 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14083 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1ypqA/info/1ypqA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1y/1ypqA/nostruct-align/1ypqA.t2k-thin90.a2m.gz, have 102121 columns in 429 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1arb/nostruct-align/1arb.t2k-thin90.a2m.gz
# 1arb.t2k-thin90.a2m with 16 sequences, total weight= 16 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20084 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1arb/info/1arb.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1a/1arb/nostruct-align/1arb.t2k-thin90.a2m.gz, have 102384 columns in 430 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jyaA/nostruct-align/1jyaA.t2k-thin90.a2m.gz
# 1jyaA.t2k-thin90.a2m with 5 sequences, total weight= 4.85158 avg weight= 0.970317 11 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jyaA/info/1jyaA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jyaA/nostruct-align/1jyaA.t2k-thin90.a2m.gz, have 102501 columns in 431 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1yndA/nostruct-align/1yndA.t2k-thin90.a2m.gz
# 1yndA.t2k-thin90.a2m with 921 sequences, total weight= 46.4464 avg weight= 0.0504304 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1yndA/info/1yndA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1y/1yndA/nostruct-align/1yndA.t2k-thin90.a2m.gz, have 102665 columns in 432 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i19A/nostruct-align/1i19A.t2k-thin90.a2m.gz
# 1i19A.t2k-thin90.a2m with 133 sequences, total weight= 133 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02186 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i19A/info/1i19A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i19A/nostruct-align/1i19A.t2k-thin90.a2m.gz, have 103206 columns in 433 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dljA/nostruct-align/1dljA.t2k-thin90.a2m.gz
# 1dljA.t2k-thin90.a2m with 309 sequences, total weight= 78.4761 avg weight= 0.253968 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30084 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dljA/info/1dljA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dljA/nostruct-align/1dljA.t2k-thin90.a2m.gz, have 103608 columns in 434 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1go3E/nostruct-align/1go3E.t2k-thin90.a2m.gz
# 1go3E.t2k-thin90.a2m with 286 sequences, total weight= 286 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17801 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1go3E/info/1go3E.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1go3E/nostruct-align/1go3E.t2k-thin90.a2m.gz, have 103785 columns in 435 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fo8A/nostruct-align/1fo8A.t2k-thin90.a2m.gz
# 1fo8A.t2k-thin90.a2m with 13 sequences, total weight= 6.9491 avg weight= 0.534546 20 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fo8A/info/1fo8A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fo8A/nostruct-align/1fo8A.t2k-thin90.a2m.gz, have 104115 columns in 436 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bdo/nostruct-align/1bdo.t2k-thin90.a2m.gz
# 1bdo.t2k-thin90.a2m with 277 sequences, total weight= 45.3387 avg weight= 0.163678 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30041 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bdo/info/1bdo.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1b/1bdo/nostruct-align/1bdo.t2k-thin90.a2m.gz, have 104195 columns in 437 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rwhA/nostruct-align/1rwhA.t2k-thin90.a2m.gz
# 1rwhA.t2k-thin90.a2m with 30 sequences, total weight= 30 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27419 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rwhA/info/1rwhA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rwhA/nostruct-align/1rwhA.t2k-thin90.a2m.gz, have 104949 columns in 438 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j7xA/nostruct-align/1j7xA.t2k-thin90.a2m.gz
# 1j7xA.t2k-thin90.a2m with 147 sequences, total weight= 52.4339 avg weight= 0.356693 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j7xA/info/1j7xA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j7xA/nostruct-align/1j7xA.t2k-thin90.a2m.gz, have 105251 columns in 439 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ukkA/nostruct-align/1ukkA.t2k-thin90.a2m.gz
# 1ukkA.t2k-thin90.a2m with 173 sequences, total weight= 173 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26652 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ukkA/info/1ukkA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1ukkA/nostruct-align/1ukkA.t2k-thin90.a2m.gz, have 105392 columns in 440 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m15A/nostruct-align/1m15A.t2k-thin90.a2m.gz
# 1m15A.t2k-thin90.a2m with 100 sequences, total weight= 19.2793 avg weight= 0.192793 33 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m15A/info/1m15A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m15A/nostruct-align/1m15A.t2k-thin90.a2m.gz, have 105748 columns in 441 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bkrA/nostruct-align/1bkrA.t2k-thin90.a2m.gz
# 1bkrA.t2k-thin90.a2m with 125 sequences, total weight= 66.163 avg weight= 0.529304 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30029 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bkrA/info/1bkrA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1b/1bkrA/nostruct-align/1bkrA.t2k-thin90.a2m.gz, have 105856 columns in 442 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qlwA/nostruct-align/1qlwA.t2k-thin90.a2m.gz
# 1qlwA.t2k-thin90.a2m with 61 sequences, total weight= 61 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11385 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qlwA/info/1qlwA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qlwA/nostruct-align/1qlwA.t2k-thin90.a2m.gz, have 106174 columns in 443 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1x8vA/nostruct-align/1x8vA.t2k-thin90.a2m.gz
# 1x8vA.t2k-thin90.a2m with 3435 sequences, total weight= 3435 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03124 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1x8vA/info/1x8vA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1x8vA/nostruct-align/1x8vA.t2k-thin90.a2m.gz, have 106603 columns in 444 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1elkA/nostruct-align/1elkA.t2k-thin90.a2m.gz
# 1elkA.t2k-thin90.a2m with 53 sequences, total weight= 37.5076 avg weight= 0.707691 38 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1elkA/info/1elkA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1elkA/nostruct-align/1elkA.t2k-thin90.a2m.gz, have 106756 columns in 445 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f1mA/nostruct-align/1f1mA.t2k-thin90.a2m.gz
# 1f1mA.t2k-thin90.a2m with 114 sequences, total weight= 6.01726 avg weight= 0.052783 24 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f1mA/info/1f1mA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f1mA/nostruct-align/1f1mA.t2k-thin90.a2m.gz, have 106918 columns in 446 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vkkA/nostruct-align/1vkkA.t2k-thin90.a2m.gz
# 1vkkA.t2k-thin90.a2m with 155 sequences, total weight= 64.3158 avg weight= 0.414941 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vkkA/info/1vkkA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vkkA/nostruct-align/1vkkA.t2k-thin90.a2m.gz, have 107055 columns in 447 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r2qA/nostruct-align/1r2qA.t2k-thin90.a2m.gz
# 1r2qA.t2k-thin90.a2m with 1136 sequences, total weight= 1136 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22007 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r2qA/info/1r2qA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r2qA/nostruct-align/1r2qA.t2k-thin90.a2m.gz, have 107225 columns in 448 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1edg/nostruct-align/1edg.t2k-thin90.a2m.gz
# 1edg.t2k-thin90.a2m with 130 sequences, total weight= 130 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0252 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1edg/info/1edg.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1edg/nostruct-align/1edg.t2k-thin90.a2m.gz, have 107605 columns in 449 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cnzA/nostruct-align/1cnzA.t2k-thin90.a2m.gz
# 1cnzA.t2k-thin90.a2m with 181 sequences, total weight= 28.3591 avg weight= 0.15668 44 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cnzA/info/1cnzA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cnzA/nostruct-align/1cnzA.t2k-thin90.a2m.gz, have 107968 columns in 450 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w96A/nostruct-align/1w96A.t2k-thin90.a2m.gz
# 1w96A.t2k-thin90.a2m with 981 sequences, total weight= 319.538 avg weight= 0.325727 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30784 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w96A/info/1w96A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1w96A/nostruct-align/1w96A.t2k-thin90.a2m.gz, have 108517 columns in 451 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k4nA/nostruct-align/1k4nA.t2k-thin90.a2m.gz
# 1k4nA.t2k-thin90.a2m with 14 sequences, total weight= 5.51251 avg weight= 0.393751 22 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k4nA/info/1k4nA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k4nA/nostruct-align/1k4nA.t2k-thin90.a2m.gz, have 108700 columns in 452 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gxrA/nostruct-align/1gxrA.t2k-thin90.a2m.gz
# 1gxrA.t2k-thin90.a2m with 1415 sequences, total weight= 1415 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.839139 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gxrA/info/1gxrA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gxrA/nostruct-align/1gxrA.t2k-thin90.a2m.gz, have 109035 columns in 453 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qv9A/nostruct-align/1qv9A.t2k-thin90.a2m.gz
# 1qv9A.t2k-thin90.a2m with 5 sequences, total weight= 2.99702 avg weight= 0.599405 12 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qv9A/info/1qv9A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qv9A/nostruct-align/1qv9A.t2k-thin90.a2m.gz, have 109317 columns in 454 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rwiA/nostruct-align/1rwiA.t2k-thin90.a2m.gz
# 1rwiA.t2k-thin90.a2m with 630 sequences, total weight= 630 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.889204 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rwiA/info/1rwiA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rwiA/nostruct-align/1rwiA.t2k-thin90.a2m.gz, have 109573 columns in 455 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2d/2dpmA/nostruct-align/2dpmA.t2k-thin90.a2m.gz
# 2dpmA.t2k-thin90.a2m with 108 sequences, total weight= 108 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26701 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2d/2dpmA/info/2dpmA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/2d/2dpmA/nostruct-align/2dpmA.t2k-thin90.a2m.gz, have 109831 columns in 456 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1u14A/nostruct-align/1u14A.t2k-thin90.a2m.gz
# 1u14A.t2k-thin90.a2m with 29 sequences, total weight= 13.5163 avg weight= 0.466078 30 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1u14A/info/1u14A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1u14A/nostruct-align/1u14A.t2k-thin90.a2m.gz, have 110000 columns in 457 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v54H/nostruct-align/1v54H.t2k-thin90.a2m.gz
# 1v54H.t2k-thin90.a2m with 24 sequences, total weight= 10.8833 avg weight= 0.453472 26 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v54H/info/1v54H.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v54H/nostruct-align/1v54H.t2k-thin90.a2m.gz, have 110079 columns in 458 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bx4A/nostruct-align/1bx4A.t2k-thin90.a2m.gz
# 1bx4A.t2k-thin90.a2m with 242 sequences, total weight= 242 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09961 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bx4A/info/1bx4A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1b/1bx4A/nostruct-align/1bx4A.t2k-thin90.a2m.gz, have 110421 columns in 459 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e42A/nostruct-align/1e42A.t2k-thin90.a2m.gz
# 1e42A.t2k-thin90.a2m with 11 sequences, total weight= 5.80161 avg weight= 0.527419 16 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e42A/info/1e42A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e42A/nostruct-align/1e42A.t2k-thin90.a2m.gz, have 110654 columns in 460 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t56A/nostruct-align/1t56A.t2k-thin90.a2m.gz
# 1t56A.t2k-thin90.a2m with 1539 sequences, total weight= 1539 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.856189 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t56A/info/1t56A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t56A/nostruct-align/1t56A.t2k-thin90.a2m.gz, have 110847 columns in 461 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tmxA/nostruct-align/1tmxA.t2k-thin90.a2m.gz
# 1tmxA.t2k-thin90.a2m with 219 sequences, total weight= 58.8716 avg weight= 0.26882 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tmxA/info/1tmxA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tmxA/nostruct-align/1tmxA.t2k-thin90.a2m.gz, have 111139 columns in 462 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lmiA/nostruct-align/1lmiA.t2k-thin90.a2m.gz
# 1lmiA.t2k-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.621329 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lmiA/info/1lmiA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lmiA/nostruct-align/1lmiA.t2k-thin90.a2m.gz, have 111270 columns in 463 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gp0A/nostruct-align/1gp0A.t2k-thin90.a2m.gz
# 1gp0A.t2k-thin90.a2m with 178 sequences, total weight= 55.418 avg weight= 0.311337 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30033 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gp0A/info/1gp0A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gp0A/nostruct-align/1gp0A.t2k-thin90.a2m.gz, have 111403 columns in 464 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1opd/nostruct-align/1opd.t2k-thin90.a2m.gz
# 1opd.t2k-thin90.a2m with 153 sequences, total weight= 20.6805 avg weight= 0.135167 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1opd/info/1opd.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1opd/nostruct-align/1opd.t2k-thin90.a2m.gz, have 111488 columns in 465 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vl7A/nostruct-align/1vl7A.t2k-thin90.a2m.gz
# 1vl7A.t2k-thin90.a2m with 46 sequences, total weight= 25.3178 avg weight= 0.550388 37 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vl7A/info/1vl7A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vl7A/nostruct-align/1vl7A.t2k-thin90.a2m.gz, have 111623 columns in 466 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mqoA/nostruct-align/1mqoA.t2k-thin90.a2m.gz
# 1mqoA.t2k-thin90.a2m with 518 sequences, total weight= 518 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01621 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mqoA/info/1mqoA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mqoA/nostruct-align/1mqoA.t2k-thin90.a2m.gz, have 111844 columns in 467 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a73A/nostruct-align/1a73A.t2k-thin90.a2m.gz
# 1a73A.t2k-thin90.a2m with 7 sequences, total weight= 6.43428 avg weight= 0.919182 10 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1a73A/info/1a73A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1a/1a73A/nostruct-align/1a73A.t2k-thin90.a2m.gz, have 112006 columns in 468 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1no5A/nostruct-align/1no5A.t2k-thin90.a2m.gz
# 1no5A.t2k-thin90.a2m with 102 sequences, total weight= 102 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1562 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1no5A/info/1no5A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1no5A/nostruct-align/1no5A.t2k-thin90.a2m.gz, have 112106 columns in 469 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fltX/nostruct-align/1fltX.t2k-thin90.a2m.gz
# 1fltX.t2k-thin90.a2m with 32 sequences, total weight= 29.9375 avg weight= 0.935548 25 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fltX/info/1fltX.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fltX/nostruct-align/1fltX.t2k-thin90.a2m.gz, have 112201 columns in 470 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lf7A/nostruct-align/1lf7A.t2k-thin90.a2m.gz
# 1lf7A.t2k-thin90.a2m with 88 sequences, total weight= 78.8609 avg weight= 0.896146 43 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lf7A/info/1lf7A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lf7A/nostruct-align/1lf7A.t2k-thin90.a2m.gz, have 112365 columns in 471 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ew0A/nostruct-align/1ew0A.t2k-thin90.a2m.gz
# 1ew0A.t2k-thin90.a2m with 341 sequences, total weight= 341 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.978087 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ew0A/info/1ew0A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1ew0A/nostruct-align/1ew0A.t2k-thin90.a2m.gz, have 112495 columns in 472 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nxuA/nostruct-align/1nxuA.t2k-thin90.a2m.gz
# 1nxuA.t2k-thin90.a2m with 50 sequences, total weight= 21.0935 avg weight= 0.42187 38 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nxuA/info/1nxuA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nxuA/nostruct-align/1nxuA.t2k-thin90.a2m.gz, have 112827 columns in 473 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f9yA/nostruct-align/1f9yA.t2k-thin90.a2m.gz
# 1f9yA.t2k-thin90.a2m with 106 sequences, total weight= 24.7746 avg weight= 0.233723 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f9yA/info/1f9yA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f9yA/nostruct-align/1f9yA.t2k-thin90.a2m.gz, have 112985 columns in 474 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3e/3ezmA/nostruct-align/3ezmA.t2k-thin90.a2m.gz
# 3ezmA.t2k-thin90.a2m with 5 sequences, total weight= 5 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20796 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3e/3ezmA/info/3ezmA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/3e/3ezmA/nostruct-align/3ezmA.t2k-thin90.a2m.gz, have 113086 columns in 475 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vmhA/nostruct-align/1vmhA.t2k-thin90.a2m.gz
# 1vmhA.t2k-thin90.a2m with 130 sequences, total weight= 17.2732 avg weight= 0.132871 39 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vmhA/info/1vmhA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vmhA/nostruct-align/1vmhA.t2k-thin90.a2m.gz, have 113215 columns in 476 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h05A/nostruct-align/1h05A.t2k-thin90.a2m.gz
# 1h05A.t2k-thin90.a2m with 102 sequences, total weight= 8.66864 avg weight= 0.0849867 30 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h05A/info/1h05A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h05A/nostruct-align/1h05A.t2k-thin90.a2m.gz, have 113353 columns in 477 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s7iA/nostruct-align/1s7iA.t2k-thin90.a2m.gz
# 1s7iA.t2k-thin90.a2m with 66 sequences, total weight= 27.7813 avg weight= 0.420928 41 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s7iA/info/1s7iA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1s/1s7iA/nostruct-align/1s7iA.t2k-thin90.a2m.gz, have 113477 columns in 478 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p9hA/nostruct-align/1p9hA.t2k-thin90.a2m.gz
# 1p9hA.t2k-thin90.a2m with 340 sequences, total weight= 101.299 avg weight= 0.297938 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30049 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p9hA/info/1p9hA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1p9hA/nostruct-align/1p9hA.t2k-thin90.a2m.gz, have 113656 columns in 479 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mwqA/nostruct-align/1mwqA.t2k-thin90.a2m.gz
# 1mwqA.t2k-thin90.a2m with 71 sequences, total weight= 32.8529 avg weight= 0.462717 40 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mwqA/info/1mwqA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mwqA/nostruct-align/1mwqA.t2k-thin90.a2m.gz, have 113756 columns in 480 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ifrA/nostruct-align/1ifrA.t2k-thin90.a2m.gz
# 1ifrA.t2k-thin90.a2m with 70 sequences, total weight= 24.8172 avg weight= 0.354531 39 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ifrA/info/1ifrA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1ifrA/nostruct-align/1ifrA.t2k-thin90.a2m.gz, have 113869 columns in 481 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ej0A/nostruct-align/1ej0A.t2k-thin90.a2m.gz
# 1ej0A.t2k-thin90.a2m with 288 sequences, total weight= 288 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23891 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ej0A/info/1ej0A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1ej0A/nostruct-align/1ej0A.t2k-thin90.a2m.gz, have 114049 columns in 482 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kq6A/nostruct-align/1kq6A.t2k-thin90.a2m.gz
# 1kq6A.t2k-thin90.a2m with 47 sequences, total weight= 47 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20501 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kq6A/info/1kq6A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kq6A/nostruct-align/1kq6A.t2k-thin90.a2m.gz, have 114189 columns in 483 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3s/3sdhA/nostruct-align/3sdhA.t2k-thin90.a2m.gz
# 3sdhA.t2k-thin90.a2m with 348 sequences, total weight= 153.003 avg weight= 0.439662 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30355 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3s/3sdhA/info/3sdhA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/3s/3sdhA/nostruct-align/3sdhA.t2k-thin90.a2m.gz, have 114334 columns in 484 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1snyA/nostruct-align/1snyA.t2k-thin90.a2m.gz
# 1snyA.t2k-thin90.a2m with 3965 sequences, total weight= 3965 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28813 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1snyA/info/1snyA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1s/1snyA/nostruct-align/1snyA.t2k-thin90.a2m.gz, have 114582 columns in 485 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1x6oA/nostruct-align/1x6oA.t2k-thin90.a2m.gz
# 1x6oA.t2k-thin90.a2m with 90 sequences, total weight= 31.4364 avg weight= 0.349293 34 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1x6oA/info/1x6oA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1x6oA/nostruct-align/1x6oA.t2k-thin90.a2m.gz, have 114725 columns in 486 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jpzA/nostruct-align/1jpzA.t2k-thin90.a2m.gz
# 1jpzA.t2k-thin90.a2m with 1426 sequences, total weight= 1426 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07568 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jpzA/info/1jpzA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jpzA/nostruct-align/1jpzA.t2k-thin90.a2m.gz, have 115181 columns in 487 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2t/2tnfA/nostruct-align/2tnfA.t2k-thin90.a2m.gz
# 2tnfA.t2k-thin90.a2m with 74 sequences, total weight= 34.4038 avg weight= 0.464916 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2t/2tnfA/info/2tnfA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/2t/2tnfA/nostruct-align/2tnfA.t2k-thin90.a2m.gz, have 115329 columns in 488 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uwfA/nostruct-align/1uwfA.t2k-thin90.a2m.gz
# 1uwfA.t2k-thin90.a2m with 7 sequences, total weight= 4.38112 avg weight= 0.625875 14 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uwfA/info/1uwfA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uwfA/nostruct-align/1uwfA.t2k-thin90.a2m.gz, have 115487 columns in 489 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d4xG/nostruct-align/1d4xG.t2k-thin90.a2m.gz
# 1d4xG.t2k-thin90.a2m with 167 sequences, total weight= 167 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21921 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d4xG/info/1d4xG.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1d/1d4xG/nostruct-align/1d4xG.t2k-thin90.a2m.gz, have 115611 columns in 490 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f86A/nostruct-align/1f86A.t2k-thin90.a2m.gz
# 1f86A.t2k-thin90.a2m with 47 sequences, total weight= 9.31995 avg weight= 0.198297 29 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f86A/info/1f86A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f86A/nostruct-align/1f86A.t2k-thin90.a2m.gz, have 115726 columns in 491 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1orrA/nostruct-align/1orrA.t2k-thin90.a2m.gz
# 1orrA.t2k-thin90.a2m with 1470 sequences, total weight= 1470 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03436 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1orrA/info/1orrA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1orrA/nostruct-align/1orrA.t2k-thin90.a2m.gz, have 116064 columns in 492 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m4iA/nostruct-align/1m4iA.t2k-thin90.a2m.gz
# 1m4iA.t2k-thin90.a2m with 88 sequences, total weight= 88 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19254 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m4iA/info/1m4iA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m4iA/nostruct-align/1m4iA.t2k-thin90.a2m.gz, have 116245 columns in 493 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rtqA/nostruct-align/1rtqA.t2k-thin90.a2m.gz
# 1rtqA.t2k-thin90.a2m with 275 sequences, total weight= 275 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.962988 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rtqA/info/1rtqA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rtqA/nostruct-align/1rtqA.t2k-thin90.a2m.gz, have 116536 columns in 494 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g6sA/nostruct-align/1g6sA.t2k-thin90.a2m.gz
# 1g6sA.t2k-thin90.a2m with 296 sequences, total weight= 74.5392 avg weight= 0.251822 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30117 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g6sA/info/1g6sA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1g6sA/nostruct-align/1g6sA.t2k-thin90.a2m.gz, have 116963 columns in 495 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r2mA/nostruct-align/1r2mA.t2k-thin90.a2m.gz
# 1r2mA.t2k-thin90.a2m with 19 sequences, total weight= 4.48085 avg weight= 0.235834 21 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r2mA/info/1r2mA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r2mA/nostruct-align/1r2mA.t2k-thin90.a2m.gz, have 117033 columns in 496 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nqzA/nostruct-align/1nqzA.t2k-thin90.a2m.gz
# 1nqzA.t2k-thin90.a2m with 602 sequences, total weight= 602 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07278 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nqzA/info/1nqzA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nqzA/nostruct-align/1nqzA.t2k-thin90.a2m.gz, have 117204 columns in 497 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2e/2eng/nostruct-align/2eng.t2k-thin90.a2m.gz
# 2eng.t2k-thin90.a2m with 20 sequences, total weight= 4.48624 avg weight= 0.224312 20 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2e/2eng/info/2eng.stride-mixed.CB-burial-12-7
WARNING: skipping d, since it is lower case.
# After reading /projects/compbio/experiments/models.97/pdb/2e/2eng/nostruct-align/2eng.t2k-thin90.a2m.gz, have 117409 columns in 498 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kafA/nostruct-align/1kafA.t2k-thin90.a2m.gz
# 1kafA.t2k-thin90.a2m with 3 sequences, total weight= 3 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0778 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kafA/info/1kafA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kafA/nostruct-align/1kafA.t2k-thin90.a2m.gz, have 117517 columns in 499 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1ku3A/nostruct-align/1ku3A.t2k-thin90.a2m.gz
# 1ku3A.t2k-thin90.a2m with 176 sequences, total weight= 14.765 avg weight= 0.0838922 38 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1ku3A/info/1ku3A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1ku3A/nostruct-align/1ku3A.t2k-thin90.a2m.gz, have 117578 columns in 500 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rkqA/nostruct-align/1rkqA.t2k-thin90.a2m.gz
# 1rkqA.t2k-thin90.a2m with 605 sequences, total weight= 605 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.964149 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rkqA/info/1rkqA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rkqA/nostruct-align/1rkqA.t2k-thin90.a2m.gz, have 117849 columns in 501 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qg8A/nostruct-align/1qg8A.t2k-thin90.a2m.gz
# 1qg8A.t2k-thin90.a2m with 477 sequences, total weight= 477 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.974505 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qg8A/info/1qg8A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qg8A/nostruct-align/1qg8A.t2k-thin90.a2m.gz, have 118087 columns in 502 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lm5A/nostruct-align/1lm5A.t2k-thin90.a2m.gz
# 1lm5A.t2k-thin90.a2m with 74 sequences, total weight= 74 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26737 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lm5A/info/1lm5A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lm5A/nostruct-align/1lm5A.t2k-thin90.a2m.gz, have 118276 columns in 503 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2c/2cuaA/nostruct-align/2cuaA.t2k-thin90.a2m.gz
# 2cuaA.t2k-thin90.a2m with 552 sequences, total weight= 52.3834 avg weight= 0.0948974 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2c/2cuaA/info/2cuaA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/2c/2cuaA/nostruct-align/2cuaA.t2k-thin90.a2m.gz, have 118398 columns in 504 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mla/nostruct-align/1mla.t2k-thin90.a2m.gz
# 1mla.t2k-thin90.a2m with 375 sequences, total weight= 193.42 avg weight= 0.515787 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30393 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mla/info/1mla.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mla/nostruct-align/1mla.t2k-thin90.a2m.gz, have 118703 columns in 505 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f9vA/nostruct-align/1f9vA.t2k-thin90.a2m.gz
# 1f9vA.t2k-thin90.a2m with 287 sequences, total weight= 32.0344 avg weight= 0.111618 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f9vA/info/1f9vA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f9vA/nostruct-align/1f9vA.t2k-thin90.a2m.gz, have 119016 columns in 506 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s2oA/nostruct-align/1s2oA.t2k-thin90.a2m.gz
# 1s2oA.t2k-thin90.a2m with 573 sequences, total weight= 573 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08492 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s2oA/info/1s2oA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1s/1s2oA/nostruct-align/1s2oA.t2k-thin90.a2m.gz, have 119260 columns in 507 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k92A/nostruct-align/1k92A.t2k-thin90.a2m.gz
# 1k92A.t2k-thin90.a2m with 123 sequences, total weight= 16.3904 avg weight= 0.133255 29 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k92A/info/1k92A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k92A/nostruct-align/1k92A.t2k-thin90.a2m.gz, have 119704 columns in 508 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i4jA/nostruct-align/1i4jA.t2k-thin90.a2m.gz
# 1i4jA.t2k-thin90.a2m with 176 sequences, total weight= 25.8785 avg weight= 0.147037 40 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i4jA/info/1i4jA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i4jA/nostruct-align/1i4jA.t2k-thin90.a2m.gz, have 119814 columns in 509 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q3oA/nostruct-align/1q3oA.t2k-thin90.a2m.gz
# 1q3oA.t2k-thin90.a2m with 485 sequences, total weight= 467.547 avg weight= 0.964015 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30041 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q3oA/info/1q3oA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q3oA/nostruct-align/1q3oA.t2k-thin90.a2m.gz, have 119918 columns in 510 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1euvA/nostruct-align/1euvA.t2k-thin90.a2m.gz
# 1euvA.t2k-thin90.a2m with 98 sequences, total weight= 98 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07322 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1euvA/info/1euvA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1euvA/nostruct-align/1euvA.t2k-thin90.a2m.gz, have 120139 columns in 511 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d3gA/nostruct-align/1d3gA.t2k-thin90.a2m.gz
# 1d3gA.t2k-thin90.a2m with 289 sequences, total weight= 289 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2087 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d3gA/info/1d3gA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1d/1d3gA/nostruct-align/1d3gA.t2k-thin90.a2m.gz, have 120499 columns in 512 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uufA/nostruct-align/1uufA.t2k-thin90.a2m.gz
# 1uufA.t2k-thin90.a2m with 1598 sequences, total weight= 1598 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24015 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uufA/info/1uufA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uufA/nostruct-align/1uufA.t2k-thin90.a2m.gz, have 120838 columns in 513 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wmaA/nostruct-align/1wmaA.t2k-thin90.a2m.gz
# 1wmaA.t2k-thin90.a2m with 5480 sequences, total weight= 5480 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2267 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wmaA/info/1wmaA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1wmaA/nostruct-align/1wmaA.t2k-thin90.a2m.gz, have 121113 columns in 514 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qveA/nostruct-align/1qveA.t2k-thin90.a2m.gz
# 1qveA.t2k-thin90.a2m with 146 sequences, total weight= 57.5364 avg weight= 0.394085 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qveA/info/1qveA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qveA/nostruct-align/1qveA.t2k-thin90.a2m.gz, have 121239 columns in 515 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qazA/nostruct-align/1qazA.t2k-thin90.a2m.gz
# 1qazA.t2k-thin90.a2m with 10 sequences, total weight= 6.7346 avg weight= 0.67346 13 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qazA/info/1qazA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qazA/nostruct-align/1qazA.t2k-thin90.a2m.gz, have 121590 columns in 516 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cczA/nostruct-align/1cczA.t2k-thin90.a2m.gz
# 1cczA.t2k-thin90.a2m with 87 sequences, total weight= 87 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0489 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cczA/info/1cczA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cczA/nostruct-align/1cczA.t2k-thin90.a2m.gz, have 121761 columns in 517 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p0zA/nostruct-align/1p0zA.t2k-thin90.a2m.gz
# 1p0zA.t2k-thin90.a2m with 41 sequences, total weight= 22.4928 avg weight= 0.548604 33 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p0zA/info/1p0zA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1p0zA/nostruct-align/1p0zA.t2k-thin90.a2m.gz, have 121892 columns in 518 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n9eA/nostruct-align/1n9eA.t2k-thin90.a2m.gz
# 1n9eA.t2k-thin90.a2m with 67 sequences, total weight= 43.825 avg weight= 0.654105 39 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n9eA/info/1n9eA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n9eA/nostruct-align/1n9eA.t2k-thin90.a2m.gz, have 122627 columns in 519 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l8bA/nostruct-align/1l8bA.t2k-thin90.a2m.gz
# 1l8bA.t2k-thin90.a2m with 67 sequences, total weight= 30.0261 avg weight= 0.44815 40 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l8bA/info/1l8bA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1l/1l8bA/nostruct-align/1l8bA.t2k-thin90.a2m.gz, have 122804 columns in 520 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vkeA/nostruct-align/1vkeA.t2k-thin90.a2m.gz
# 1vkeA.t2k-thin90.a2m with 150 sequences, total weight= 150 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28857 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vkeA/info/1vkeA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vkeA/nostruct-align/1vkeA.t2k-thin90.a2m.gz, have 122921 columns in 521 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1b8oA/nostruct-align/1b8oA.t2k-thin90.a2m.gz
# 1b8oA.t2k-thin90.a2m with 130 sequences, total weight= 37.5754 avg weight= 0.289041 45 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1b8oA/info/1b8oA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1b/1b8oA/nostruct-align/1b8oA.t2k-thin90.a2m.gz, have 123201 columns in 522 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vcaA/nostruct-align/1vcaA.t2k-thin90.a2m.gz
# 1vcaA.t2k-thin90.a2m with 1073 sequences, total weight= 1073 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.997197 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vcaA/info/1vcaA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vcaA/nostruct-align/1vcaA.t2k-thin90.a2m.gz, have 123400 columns in 523 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qq9A/nostruct-align/1qq9A.t2k-thin90.a2m.gz
# 1qq9A.t2k-thin90.a2m with 211 sequences, total weight= 211 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02171 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qq9A/info/1qq9A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qq9A/nostruct-align/1qq9A.t2k-thin90.a2m.gz, have 123677 columns in 524 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xkrA/nostruct-align/1xkrA.t2k-thin90.a2m.gz
# 1xkrA.t2k-thin90.a2m with 90 sequences, total weight= 90 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1946 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xkrA/info/1xkrA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1xkrA/nostruct-align/1xkrA.t2k-thin90.a2m.gz, have 123882 columns in 525 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uasA/nostruct-align/1uasA.t2k-thin90.a2m.gz
# 1uasA.t2k-thin90.a2m with 111 sequences, total weight= 111 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25097 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uasA/info/1uasA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uasA/nostruct-align/1uasA.t2k-thin90.a2m.gz, have 124244 columns in 526 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1y9lA/nostruct-align/1y9lA.t2k-thin90.a2m.gz
# 1y9lA.t2k-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.616166 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1y9lA/info/1y9lA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1y/1y9lA/nostruct-align/1y9lA.t2k-thin90.a2m.gz, have 124354 columns in 527 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hyvA/nostruct-align/1hyvA.t2k-thin90.a2m.gz
# 1hyvA.t2k-thin90.a2m with 355 sequences, total weight= 355 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25099 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hyvA/info/1hyvA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hyvA/nostruct-align/1hyvA.t2k-thin90.a2m.gz, have 124498 columns in 528 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uxy/nostruct-align/1uxy.t2k-thin90.a2m.gz
# 1uxy.t2k-thin90.a2m with 121 sequences, total weight= 32.5913 avg weight= 0.26935 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uxy/info/1uxy.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uxy/nostruct-align/1uxy.t2k-thin90.a2m.gz, have 124838 columns in 529 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1avwB/nostruct-align/1avwB.t2k-thin90.a2m.gz
# 1avwB.t2k-thin90.a2m with 90 sequences, total weight= 49.0697 avg weight= 0.545219 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1avwB/info/1avwB.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1a/1avwB/nostruct-align/1avwB.t2k-thin90.a2m.gz, have 125009 columns in 530 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xszA/nostruct-align/1xszA.t2k-thin90.a2m.gz
# 1xszA.t2k-thin90.a2m with 162 sequences, total weight= 126.395 avg weight= 0.780215 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xszA/info/1xszA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1xszA/nostruct-align/1xszA.t2k-thin90.a2m.gz, have 125365 columns in 531 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e43A/nostruct-align/1e43A.t2k-thin90.a2m.gz
# 1e43A.t2k-thin90.a2m with 357 sequences, total weight= 357 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07365 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e43A/info/1e43A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e43A/nostruct-align/1e43A.t2k-thin90.a2m.gz, have 125848 columns in 532 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fxoA/nostruct-align/1fxoA.t2k-thin90.a2m.gz
# 1fxoA.t2k-thin90.a2m with 398 sequences, total weight= 398 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20333 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fxoA/info/1fxoA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fxoA/nostruct-align/1fxoA.t2k-thin90.a2m.gz, have 126140 columns in 533 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q52A/nostruct-align/1q52A.t2k-thin90.a2m.gz
# 1q52A.t2k-thin90.a2m with 911 sequences, total weight= 253.264 avg weight= 0.278007 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30693 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q52A/info/1q52A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q52A/nostruct-align/1q52A.t2k-thin90.a2m.gz, have 126409 columns in 534 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mnaA/nostruct-align/1mnaA.t2k-thin90.a2m.gz
# 1mnaA.t2k-thin90.a2m with 284 sequences, total weight= 284 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.846483 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mnaA/info/1mnaA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mnaA/nostruct-align/1mnaA.t2k-thin90.a2m.gz, have 126685 columns in 535 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mugA/nostruct-align/1mugA.t2k-thin90.a2m.gz
# 1mugA.t2k-thin90.a2m with 42 sequences, total weight= 42 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27357 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mugA/info/1mugA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mugA/nostruct-align/1mugA.t2k-thin90.a2m.gz, have 126850 columns in 536 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1suuA/nostruct-align/1suuA.t2k-thin90.a2m.gz
# 1suuA.t2k-thin90.a2m with 238 sequences, total weight= 82.7719 avg weight= 0.347781 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30128 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1suuA/info/1suuA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1s/1suuA/nostruct-align/1suuA.t2k-thin90.a2m.gz, have 127143 columns in 537 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nf9A/nostruct-align/1nf9A.t2k-thin90.a2m.gz
# 1nf9A.t2k-thin90.a2m with 215 sequences, total weight= 215 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24477 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nf9A/info/1nf9A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nf9A/nostruct-align/1nf9A.t2k-thin90.a2m.gz, have 127350 columns in 538 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bgf/nostruct-align/1bgf.t2k-thin90.a2m.gz
# 1bgf.t2k-thin90.a2m with 24 sequences, total weight= 10.1892 avg weight= 0.424549 25 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bgf/info/1bgf.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1b/1bgf/nostruct-align/1bgf.t2k-thin90.a2m.gz, have 127474 columns in 539 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ugiA/nostruct-align/1ugiA.t2k-thin90.a2m.gz
# 1ugiA.t2k-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.584933 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ugiA/info/1ugiA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1ugiA/nostruct-align/1ugiA.t2k-thin90.a2m.gz, have 127557 columns in 540 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1y0uA/nostruct-align/1y0uA.t2k-thin90.a2m.gz
# 1y0uA.t2k-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.06995 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1y0uA/info/1y0uA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1y/1y0uA/nostruct-align/1y0uA.t2k-thin90.a2m.gz, have 127646 columns in 541 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1y66A/nostruct-align/1y66A.t2k-thin90.a2m.gz
# 1y66A.t2k-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.514604 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1y66A/info/1y66A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1y/1y66A/nostruct-align/1y66A.t2k-thin90.a2m.gz, have 127696 columns in 542 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wdpA/nostruct-align/1wdpA.t2k-thin90.a2m.gz
# 1wdpA.t2k-thin90.a2m with 52 sequences, total weight= 11.0115 avg weight= 0.211759 27 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wdpA/info/1wdpA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1wdpA/nostruct-align/1wdpA.t2k-thin90.a2m.gz, have 128189 columns in 543 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2b/2bkaA/nostruct-align/2bkaA.t2k-thin90.a2m.gz
# 2bkaA.t2k-thin90.a2m with 343 sequences, total weight= 343 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04577 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2b/2bkaA/info/2bkaA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/2b/2bkaA/nostruct-align/2bkaA.t2k-thin90.a2m.gz, have 128420 columns in 544 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2b/2bjqA/nostruct-align/2bjqA.t2k-thin90.a2m.gz
# 2bjqA.t2k-thin90.a2m with 13 sequences, total weight= 5.02766 avg weight= 0.386743 17 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2b/2bjqA/info/2bjqA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/2b/2bjqA/nostruct-align/2bjqA.t2k-thin90.a2m.gz, have 128760 columns in 545 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sw5A/nostruct-align/1sw5A.t2k-thin90.a2m.gz
# 1sw5A.t2k-thin90.a2m with 124 sequences, total weight= 53.4192 avg weight= 0.4308 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sw5A/info/1sw5A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sw5A/nostruct-align/1sw5A.t2k-thin90.a2m.gz, have 129030 columns in 546 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mqkL/nostruct-align/1mqkL.t2k-thin90.a2m.gz
# 1mqkL.t2k-thin90.a2m with 6402 sequences, total weight= 74.3143 avg weight= 0.011608 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31391 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mqkL/info/1mqkL.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mqkL/nostruct-align/1mqkL.t2k-thin90.a2m.gz, have 129138 columns in 547 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vk1A/nostruct-align/1vk1A.t2k-thin90.a2m.gz
# 1vk1A.t2k-thin90.a2m with 153 sequences, total weight= 109.893 avg weight= 0.718254 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vk1A/info/1vk1A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vk1A/nostruct-align/1vk1A.t2k-thin90.a2m.gz, have 129370 columns in 548 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xk7A/nostruct-align/1xk7A.t2k-thin90.a2m.gz
# 1xk7A.t2k-thin90.a2m with 589 sequences, total weight= 118.624 avg weight= 0.201399 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30263 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xk7A/info/1xk7A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1xk7A/nostruct-align/1xk7A.t2k-thin90.a2m.gz, have 129777 columns in 549 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2t/2trxA/nostruct-align/2trxA.t2k-thin90.a2m.gz
# 2trxA.t2k-thin90.a2m with 665 sequences, total weight= 665 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17012 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2t/2trxA/info/2trxA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/2t/2trxA/nostruct-align/2trxA.t2k-thin90.a2m.gz, have 129885 columns in 550 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2b/2bjfA/nostruct-align/2bjfA.t2k-thin90.a2m.gz
# 2bjfA.t2k-thin90.a2m with 75 sequences, total weight= 46.7012 avg weight= 0.622683 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2b/2bjfA/info/2bjfA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/2b/2bjfA/nostruct-align/2bjfA.t2k-thin90.a2m.gz, have 130213 columns in 551 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sqgA/nostruct-align/1sqgA.t2k-thin90.a2m.gz
# 1sqgA.t2k-thin90.a2m with 540 sequences, total weight= 540 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1268 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sqgA/info/1sqgA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sqgA/nostruct-align/1sqgA.t2k-thin90.a2m.gz, have 130637 columns in 552 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tvgA/nostruct-align/1tvgA.t2k-thin90.a2m.gz
# 1tvgA.t2k-thin90.a2m with 6 sequences, total weight= 3.4076 avg weight= 0.567933 12 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tvgA/info/1tvgA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tvgA/nostruct-align/1tvgA.t2k-thin90.a2m.gz, have 130773 columns in 553 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h4xA/nostruct-align/1h4xA.t2k-thin90.a2m.gz
# 1h4xA.t2k-thin90.a2m with 170 sequences, total weight= 170 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26298 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h4xA/info/1h4xA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h4xA/nostruct-align/1h4xA.t2k-thin90.a2m.gz, have 130884 columns in 554 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v4pA/nostruct-align/1v4pA.t2k-thin90.a2m.gz
# 1v4pA.t2k-thin90.a2m with 387 sequences, total weight= 109.174 avg weight= 0.282104 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30316 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v4pA/info/1v4pA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v4pA/nostruct-align/1v4pA.t2k-thin90.a2m.gz, have 131035 columns in 555 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vclA/nostruct-align/1vclA.t2k-thin90.a2m.gz
# 1vclA.t2k-thin90.a2m with 125 sequences, total weight= 42.6107 avg weight= 0.340886 22 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vclA/info/1vclA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vclA/nostruct-align/1vclA.t2k-thin90.a2m.gz, have 131467 columns in 556 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w1hA/nostruct-align/1w1hA.t2k-thin90.a2m.gz
# 1w1hA.t2k-thin90.a2m with 15 sequences, total weight= 7.48169 avg weight= 0.49878 21 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w1hA/info/1w1hA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1w1hA/nostruct-align/1w1hA.t2k-thin90.a2m.gz, have 131614 columns in 557 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ihjA/nostruct-align/1ihjA.t2k-thin90.a2m.gz
# 1ihjA.t2k-thin90.a2m with 353 sequences, total weight= 176.699 avg weight= 0.500563 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30179 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ihjA/info/1ihjA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1ihjA/nostruct-align/1ihjA.t2k-thin90.a2m.gz, have 131708 columns in 558 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r62A/nostruct-align/1r62A.t2k-thin90.a2m.gz
# 1r62A.t2k-thin90.a2m with 4006 sequences, total weight= 4006 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24069 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r62A/info/1r62A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r62A/nostruct-align/1r62A.t2k-thin90.a2m.gz, have 131844 columns in 559 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1y0bA/nostruct-align/1y0bA.t2k-thin90.a2m.gz
# 1y0bA.t2k-thin90.a2m with 450 sequences, total weight= 225.627 avg weight= 0.501394 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30273 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1y0bA/info/1y0bA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1y/1y0bA/nostruct-align/1y0bA.t2k-thin90.a2m.gz, have 132037 columns in 560 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nofA/nostruct-align/1nofA.t2k-thin90.a2m.gz
# 1nofA.t2k-thin90.a2m with 49 sequences, total weight= 49 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25643 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nofA/info/1nofA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nofA/nostruct-align/1nofA.t2k-thin90.a2m.gz, have 132420 columns in 561 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1ykiA/nostruct-align/1ykiA.t2k-thin90.a2m.gz
# 1ykiA.t2k-thin90.a2m with 331 sequences, total weight= 331 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11755 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1ykiA/info/1ykiA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1y/1ykiA/nostruct-align/1ykiA.t2k-thin90.a2m.gz, have 132636 columns in 562 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g3p/nostruct-align/1g3p.t2k-thin90.a2m.gz
# 1g3p.t2k-thin90.a2m with 3 sequences, total weight= 3 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16516 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g3p/info/1g3p.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1g3p/nostruct-align/1g3p.t2k-thin90.a2m.gz, have 132828 columns in 563 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vdwA/nostruct-align/1vdwA.t2k-thin90.a2m.gz
# 1vdwA.t2k-thin90.a2m with 1307 sequences, total weight= 1307 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24901 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vdwA/info/1vdwA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vdwA/nostruct-align/1vdwA.t2k-thin90.a2m.gz, have 133076 columns in 564 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h2cA/nostruct-align/1h2cA.t2k-thin90.a2m.gz
# 1h2cA.t2k-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01055 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h2cA/info/1h2cA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h2cA/nostruct-align/1h2cA.t2k-thin90.a2m.gz, have 133200 columns in 565 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vhuA/nostruct-align/1vhuA.t2k-thin90.a2m.gz
# 1vhuA.t2k-thin90.a2m with 127 sequences, total weight= 79.2484 avg weight= 0.624003 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vhuA/info/1vhuA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vhuA/nostruct-align/1vhuA.t2k-thin90.a2m.gz, have 133392 columns in 566 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1ju2A/nostruct-align/1ju2A.t2k-thin90.a2m.gz
# 1ju2A.t2k-thin90.a2m with 294 sequences, total weight= 294 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03754 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1ju2A/info/1ju2A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1ju2A/nostruct-align/1ju2A.t2k-thin90.a2m.gz, have 133913 columns in 567 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1ysqA/nostruct-align/1ysqA.t2k-thin90.a2m.gz
# 1ysqA.t2k-thin90.a2m with 499 sequences, total weight= 499 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25986 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1ysqA/info/1ysqA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1y/1ysqA/nostruct-align/1ysqA.t2k-thin90.a2m.gz, have 134094 columns in 568 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t9iA/nostruct-align/1t9iA.t2k-thin90.a2m.gz
# 1t9iA.t2k-thin90.a2m with 150 sequences, total weight= 150 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2094 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t9iA/info/1t9iA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t9iA/nostruct-align/1t9iA.t2k-thin90.a2m.gz, have 134247 columns in 569 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d2sA/nostruct-align/1d2sA.t2k-thin90.a2m.gz
# 1d2sA.t2k-thin90.a2m with 189 sequences, total weight= 189 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.991545 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d2sA/info/1d2sA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1d/1d2sA/nostruct-align/1d2sA.t2k-thin90.a2m.gz, have 134417 columns in 570 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oh4A/nostruct-align/1oh4A.t2k-thin90.a2m.gz
# 1oh4A.t2k-thin90.a2m with 5 sequences, total weight= 4.81508 avg weight= 0.963016 11 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oh4A/info/1oh4A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oh4A/nostruct-align/1oh4A.t2k-thin90.a2m.gz, have 134591 columns in 571 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ok0A/nostruct-align/1ok0A.t2k-thin90.a2m.gz
# 1ok0A.t2k-thin90.a2m with 8 sequences, total weight= 4.20491 avg weight= 0.525614 16 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ok0A/info/1ok0A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1ok0A/nostruct-align/1ok0A.t2k-thin90.a2m.gz, have 134665 columns in 572 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1thfD/nostruct-align/1thfD.t2k-thin90.a2m.gz
# 1thfD.t2k-thin90.a2m with 444 sequences, total weight= 444 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2861 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1thfD/info/1thfD.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1thfD/nostruct-align/1thfD.t2k-thin90.a2m.gz, have 134918 columns in 573 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/7a/7a3hA/nostruct-align/7a3hA.t2k-thin90.a2m.gz
# 7a3hA.t2k-thin90.a2m with 157 sequences, total weight= 157 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08996 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/7a/7a3hA/info/7a3hA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/7a/7a3hA/nostruct-align/7a3hA.t2k-thin90.a2m.gz, have 135218 columns in 574 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ejxC/nostruct-align/1ejxC.t2k-thin90.a2m.gz
# 1ejxC.t2k-thin90.a2m with 384 sequences, total weight= 378.443 avg weight= 0.985528 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ejxC/info/1ejxC.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1ejxC/nostruct-align/1ejxC.t2k-thin90.a2m.gz, have 135774 columns in 575 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tfe/nostruct-align/1tfe.t2k-thin90.a2m.gz
# 1tfe.t2k-thin90.a2m with 137 sequences, total weight= 17.5714 avg weight= 0.128258 39 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tfe/info/1tfe.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tfe/nostruct-align/1tfe.t2k-thin90.a2m.gz, have 135916 columns in 576 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f94A/nostruct-align/1f94A.t2k-thin90.a2m.gz
# 1f94A.t2k-thin90.a2m with 143 sequences, total weight= 20.4403 avg weight= 0.142939 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f94A/info/1f94A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f94A/nostruct-align/1f94A.t2k-thin90.a2m.gz, have 135979 columns in 577 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kr4A/nostruct-align/1kr4A.t2k-thin90.a2m.gz
# 1kr4A.t2k-thin90.a2m with 70 sequences, total weight= 18.3437 avg weight= 0.262052 39 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kr4A/info/1kr4A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kr4A/nostruct-align/1kr4A.t2k-thin90.a2m.gz, have 136089 columns in 578 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1ryoA/nostruct-align/1ryoA.t2k-thin90.a2m.gz
# 1ryoA.t2k-thin90.a2m with 164 sequences, total weight= 78.9855 avg weight= 0.481619 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30037 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1ryoA/info/1ryoA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1ryoA/nostruct-align/1ryoA.t2k-thin90.a2m.gz, have 136413 columns in 579 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bu8A/nostruct-align/1bu8A.t2k-thin90.a2m.gz
# 1bu8A.t2k-thin90.a2m with 146 sequences, total weight= 104.558 avg weight= 0.716148 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bu8A/info/1bu8A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1b/1bu8A/nostruct-align/1bu8A.t2k-thin90.a2m.gz, have 136859 columns in 580 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rw1A/nostruct-align/1rw1A.t2k-thin90.a2m.gz
# 1rw1A.t2k-thin90.a2m with 213 sequences, total weight= 38.9814 avg weight= 0.183011 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rw1A/info/1rw1A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rw1A/nostruct-align/1rw1A.t2k-thin90.a2m.gz, have 136973 columns in 581 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1y4wA/nostruct-align/1y4wA.t2k-thin90.a2m.gz
# 1y4wA.t2k-thin90.a2m with 289 sequences, total weight= 232.806 avg weight= 0.805558 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30138 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1y4wA/info/1y4wA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1y/1y4wA/nostruct-align/1y4wA.t2k-thin90.a2m.gz, have 137490 columns in 582 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j24A/nostruct-align/1j24A.t2k-thin90.a2m.gz
# 1j24A.t2k-thin90.a2m with 46 sequences, total weight= 32.85 avg weight= 0.714131 41 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j24A/info/1j24A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j24A/nostruct-align/1j24A.t2k-thin90.a2m.gz, have 137623 columns in 583 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hxhA/nostruct-align/1hxhA.t2k-thin90.a2m.gz
# 1hxhA.t2k-thin90.a2m with 2988 sequences, total weight= 2988 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25913 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hxhA/info/1hxhA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hxhA/nostruct-align/1hxhA.t2k-thin90.a2m.gz, have 137876 columns in 584 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f32A/nostruct-align/1f32A.t2k-thin90.a2m.gz
# 1f32A.t2k-thin90.a2m with 8 sequences, total weight= 6.84308 avg weight= 0.855385 14 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f32A/info/1f32A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f32A/nostruct-align/1f32A.t2k-thin90.a2m.gz, have 138003 columns in 585 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jhgA/nostruct-align/1jhgA.t2k-thin90.a2m.gz
# 1jhgA.t2k-thin90.a2m with 25 sequences, total weight= 13.5581 avg weight= 0.542323 28 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jhgA/info/1jhgA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jhgA/nostruct-align/1jhgA.t2k-thin90.a2m.gz, have 138104 columns in 586 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r0uA/nostruct-align/1r0uA.t2k-thin90.a2m.gz
# 1r0uA.t2k-thin90.a2m with 21 sequences, total weight= 21 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15189 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r0uA/info/1r0uA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r0uA/nostruct-align/1r0uA.t2k-thin90.a2m.gz, have 138246 columns in 587 chains
# command:CPU_time= 1580.32 sec, elapsed time= 1696.29 sec)
# command:# command:# Prefix for input files set to /cse/faculty/karplus/dna/predict-2nd/testing/training-data/
# command:# reading script from file dunbrack-30pc-1763-1.t2k-thin90-CB_burial_12_7
# Prefix for input files set to 
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ed8A/nostruct-align/1ed8A.t2k-thin90.a2m.gz
# 1ed8A.t2k-thin90.a2m with 116 sequences, total weight= 46.095 avg weight= 0.397371 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ed8A/info/1ed8A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1ed8A/nostruct-align/1ed8A.t2k-thin90.a2m.gz, have 449 columns in 1 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2g/2gdm/nostruct-align/2gdm.t2k-thin90.a2m.gz
# 2gdm.t2k-thin90.a2m with 261 sequences, total weight= 261 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27201 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2g/2gdm/info/2gdm.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/2g/2gdm/nostruct-align/2gdm.t2k-thin90.a2m.gz, have 602 columns in 2 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iukA/nostruct-align/1iukA.t2k-thin90.a2m.gz
# 1iukA.t2k-thin90.a2m with 118 sequences, total weight= 38.6294 avg weight= 0.327368 43 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iukA/info/1iukA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1iukA/nostruct-align/1iukA.t2k-thin90.a2m.gz, have 738 columns in 3 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1senA/nostruct-align/1senA.t2k-thin90.a2m.gz
# 1senA.t2k-thin90.a2m with 777 sequences, total weight= 777 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29108 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1senA/info/1senA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1s/1senA/nostruct-align/1senA.t2k-thin90.a2m.gz, have 872 columns in 4 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rm6B/nostruct-align/1rm6B.t2k-thin90.a2m.gz
# 1rm6B.t2k-thin90.a2m with 189 sequences, total weight= 51.339 avg weight= 0.271635 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rm6B/info/1rm6B.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rm6B/nostruct-align/1rm6B.t2k-thin90.a2m.gz, have 1195 columns in 5 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jtvA/nostruct-align/1jtvA.t2k-thin90.a2m.gz
# 1jtvA.t2k-thin90.a2m with 3266 sequences, total weight= 3266 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19126 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jtvA/info/1jtvA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jtvA/nostruct-align/1jtvA.t2k-thin90.a2m.gz, have 1473 columns in 6 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g5aA/nostruct-align/1g5aA.t2k-thin90.a2m.gz
# 1g5aA.t2k-thin90.a2m with 437 sequences, total weight= 437 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.949663 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g5aA/info/1g5aA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1g5aA/nostruct-align/1g5aA.t2k-thin90.a2m.gz, have 2101 columns in 7 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1ro0A/nostruct-align/1ro0A.t2k-thin90.a2m.gz
# 1ro0A.t2k-thin90.a2m with 12 sequences, total weight= 6.4283 avg weight= 0.535692 17 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1ro0A/info/1ro0A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1ro0A/nostruct-align/1ro0A.t2k-thin90.a2m.gz, have 2311 columns in 8 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xg0C/nostruct-align/1xg0C.t2k-thin90.a2m.gz
# 1xg0C.t2k-thin90.a2m with 241 sequences, total weight= 24.8278 avg weight= 0.10302 44 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xg0C/info/1xg0C.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1xg0C/nostruct-align/1xg0C.t2k-thin90.a2m.gz, have 2485 columns in 9 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k2eA/nostruct-align/1k2eA.t2k-thin90.a2m.gz
# 1k2eA.t2k-thin90.a2m with 623 sequences, total weight= 623 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.94777 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k2eA/info/1k2eA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k2eA/nostruct-align/1k2eA.t2k-thin90.a2m.gz, have 2637 columns in 10 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1km4A/nostruct-align/1km4A.t2k-thin90.a2m.gz
# 1km4A.t2k-thin90.a2m with 252 sequences, total weight= 252 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25616 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1km4A/info/1km4A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1km4A/nostruct-align/1km4A.t2k-thin90.a2m.gz, have 2849 columns in 11 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cex/nostruct-align/1cex.t2k-thin90.a2m.gz
# 1cex.t2k-thin90.a2m with 32 sequences, total weight= 23.742 avg weight= 0.741937 28 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cex/info/1cex.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cex/nostruct-align/1cex.t2k-thin90.a2m.gz, have 3046 columns in 12 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qqfA/nostruct-align/1qqfA.t2k-thin90.a2m.gz
# 1qqfA.t2k-thin90.a2m with 104 sequences, total weight= 30.7089 avg weight= 0.295278 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qqfA/info/1qqfA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qqfA/nostruct-align/1qqfA.t2k-thin90.a2m.gz, have 3323 columns in 13 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gd0A/nostruct-align/1gd0A.t2k-thin90.a2m.gz
# 1gd0A.t2k-thin90.a2m with 51 sequences, total weight= 31.1657 avg weight= 0.611093 34 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gd0A/info/1gd0A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gd0A/nostruct-align/1gd0A.t2k-thin90.a2m.gz, have 3441 columns in 14 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r77A/nostruct-align/1r77A.t2k-thin90.a2m.gz
# 1r77A.t2k-thin90.a2m with 45 sequences, total weight= 29.5952 avg weight= 0.657671 31 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r77A/info/1r77A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r77A/nostruct-align/1r77A.t2k-thin90.a2m.gz, have 3540 columns in 15 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1x82A/nostruct-align/1x82A.t2k-thin90.a2m.gz
# 1x82A.t2k-thin90.a2m with 131 sequences, total weight= 131 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1393 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1x82A/info/1x82A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1x82A/nostruct-align/1x82A.t2k-thin90.a2m.gz, have 3730 columns in 16 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1atzA/nostruct-align/1atzA.t2k-thin90.a2m.gz
# 1atzA.t2k-thin90.a2m with 267 sequences, total weight= 267 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29331 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1atzA/info/1atzA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1a/1atzA/nostruct-align/1atzA.t2k-thin90.a2m.gz, have 3914 columns in 17 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v9yA/nostruct-align/1v9yA.t2k-thin90.a2m.gz
# 1v9yA.t2k-thin90.a2m with 1179 sequences, total weight= 1179 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.984587 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v9yA/info/1v9yA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v9yA/nostruct-align/1v9yA.t2k-thin90.a2m.gz, have 4017 columns in 18 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ocyA/nostruct-align/1ocyA.t2k-thin90.a2m.gz
# 1ocyA.t2k-thin90.a2m with 53 sequences, total weight= 53 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29149 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ocyA/info/1ocyA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1ocyA/nostruct-align/1ocyA.t2k-thin90.a2m.gz, have 4215 columns in 19 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fobA/nostruct-align/1fobA.t2k-thin90.a2m.gz
# 1fobA.t2k-thin90.a2m with 19 sequences, total weight= 8.75192 avg weight= 0.460628 24 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fobA/info/1fobA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fobA/nostruct-align/1fobA.t2k-thin90.a2m.gz, have 4549 columns in 20 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dwkA/nostruct-align/1dwkA.t2k-thin90.a2m.gz
# 1dwkA.t2k-thin90.a2m with 24 sequences, total weight= 6.53294 avg weight= 0.272206 23 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dwkA/info/1dwkA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dwkA/nostruct-align/1dwkA.t2k-thin90.a2m.gz, have 4705 columns in 21 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ugpB/nostruct-align/1ugpB.t2k-thin90.a2m.gz
# 1ugpB.t2k-thin90.a2m with 22 sequences, total weight= 13.216 avg weight= 0.600725 22 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ugpB/info/1ugpB.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1ugpB/nostruct-align/1ugpB.t2k-thin90.a2m.gz, have 4931 columns in 22 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ijbA/nostruct-align/1ijbA.t2k-thin90.a2m.gz
# 1ijbA.t2k-thin90.a2m with 333 sequences, total weight= 333 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23028 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ijbA/info/1ijbA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1ijbA/nostruct-align/1ijbA.t2k-thin90.a2m.gz, have 5133 columns in 23 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lqvA/nostruct-align/1lqvA.t2k-thin90.a2m.gz
# 1lqvA.t2k-thin90.a2m with 512 sequences, total weight= 40.6686 avg weight= 0.0794309 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lqvA/info/1lqvA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lqvA/nostruct-align/1lqvA.t2k-thin90.a2m.gz, have 5305 columns in 24 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xodA/nostruct-align/1xodA.t2k-thin90.a2m.gz
# 1xodA.t2k-thin90.a2m with 33 sequences, total weight= 11.189 avg weight= 0.33906 25 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xodA/info/1xodA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1xodA/nostruct-align/1xodA.t2k-thin90.a2m.gz, have 5410 columns in 25 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cc8A/nostruct-align/1cc8A.t2k-thin90.a2m.gz
# 1cc8A.t2k-thin90.a2m with 186 sequences, total weight= 60.8503 avg weight= 0.327152 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cc8A/info/1cc8A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cc8A/nostruct-align/1cc8A.t2k-thin90.a2m.gz, have 5482 columns in 26 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wqjB/nostruct-align/1wqjB.t2k-thin90.a2m.gz
# 1wqjB.t2k-thin90.a2m with 123 sequences, total weight= 40.9971 avg weight= 0.33331 43 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wqjB/info/1wqjB.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1wqjB/nostruct-align/1wqjB.t2k-thin90.a2m.gz, have 5562 columns in 27 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1on2A/nostruct-align/1on2A.t2k-thin90.a2m.gz
# 1on2A.t2k-thin90.a2m with 229 sequences, total weight= 229 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2243 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1on2A/info/1on2A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1on2A/nostruct-align/1on2A.t2k-thin90.a2m.gz, have 5697 columns in 28 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f3uA/nostruct-align/1f3uA.t2k-thin90.a2m.gz
# 1f3uA.t2k-thin90.a2m with 10 sequences, total weight= 10 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19149 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f3uA/info/1f3uA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f3uA/nostruct-align/1f3uA.t2k-thin90.a2m.gz, have 5815 columns in 29 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rqpA/nostruct-align/1rqpA.t2k-thin90.a2m.gz
# 1rqpA.t2k-thin90.a2m with 41 sequences, total weight= 17.0549 avg weight= 0.415972 28 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rqpA/info/1rqpA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rqpA/nostruct-align/1rqpA.t2k-thin90.a2m.gz, have 6106 columns in 30 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vpt/nostruct-align/1vpt.t2k-thin90.a2m.gz
# 1vpt.t2k-thin90.a2m with 12 sequences, total weight= 7.48844 avg weight= 0.624036 18 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vpt/info/1vpt.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vpt/nostruct-align/1vpt.t2k-thin90.a2m.gz, have 6397 columns in 31 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p4cA/nostruct-align/1p4cA.t2k-thin90.a2m.gz
# 1p4cA.t2k-thin90.a2m with 448 sequences, total weight= 448 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2228 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p4cA/info/1p4cA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1p4cA/nostruct-align/1p4cA.t2k-thin90.a2m.gz, have 6750 columns in 32 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s5dA/nostruct-align/1s5dA.t2k-thin90.a2m.gz
# 1s5dA.t2k-thin90.a2m with 19 sequences, total weight= 15.9522 avg weight= 0.839588 17 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s5dA/info/1s5dA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1s/1s5dA/nostruct-align/1s5dA.t2k-thin90.a2m.gz, have 6968 columns in 33 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m40A/nostruct-align/1m40A.t2k-thin90.a2m.gz
# 1m40A.t2k-thin90.a2m with 125 sequences, total weight= 111.265 avg weight= 0.890121 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m40A/info/1m40A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m40A/nostruct-align/1m40A.t2k-thin90.a2m.gz, have 7231 columns in 34 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p5fA/nostruct-align/1p5fA.t2k-thin90.a2m.gz
# 1p5fA.t2k-thin90.a2m with 325 sequences, total weight= 325 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24241 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p5fA/info/1p5fA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1p5fA/nostruct-align/1p5fA.t2k-thin90.a2m.gz, have 7417 columns in 35 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a7s/nostruct-align/1a7s.t2k-thin90.a2m.gz
# 1a7s.t2k-thin90.a2m with 1515 sequences, total weight= 300.194 avg weight= 0.198148 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.32001 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1a7s/info/1a7s.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1a/1a7s/nostruct-align/1a7s.t2k-thin90.a2m.gz, have 7638 columns in 36 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i58A/nostruct-align/1i58A.t2k-thin90.a2m.gz
# 1i58A.t2k-thin90.a2m with 843 sequences, total weight= 843 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24546 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i58A/info/1i58A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i58A/nostruct-align/1i58A.t2k-thin90.a2m.gz, have 7827 columns in 37 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uujA/nostruct-align/1uujA.t2k-thin90.a2m.gz
# 1uujA.t2k-thin90.a2m with 21 sequences, total weight= 8.55259 avg weight= 0.407266 27 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uujA/info/1uujA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uujA/nostruct-align/1uujA.t2k-thin90.a2m.gz, have 7903 columns in 38 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v8yA/nostruct-align/1v8yA.t2k-thin90.a2m.gz
# 1v8yA.t2k-thin90.a2m with 1130 sequences, total weight= 1130 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07292 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v8yA/info/1v8yA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v8yA/nostruct-align/1v8yA.t2k-thin90.a2m.gz, have 8053 columns in 39 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1usmA/nostruct-align/1usmA.t2k-thin90.a2m.gz
# 1usmA.t2k-thin90.a2m with 80 sequences, total weight= 20.0002 avg weight= 0.250003 39 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1usmA/info/1usmA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1usmA/nostruct-align/1usmA.t2k-thin90.a2m.gz, have 8130 columns in 40 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fr2B/nostruct-align/1fr2B.t2k-thin90.a2m.gz
# 1fr2B.t2k-thin90.a2m with 14 sequences, total weight= 4.51977 avg weight= 0.322841 20 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fr2B/info/1fr2B.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fr2B/nostruct-align/1fr2B.t2k-thin90.a2m.gz, have 8261 columns in 41 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d2vA/nostruct-align/1d2vA.t2k-thin90.a2m.gz
# 1d2vA.t2k-thin90.a2m with 71 sequences, total weight= 16.5616 avg weight= 0.233262 35 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d2vA/info/1d2vA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1d/1d2vA/nostruct-align/1d2vA.t2k-thin90.a2m.gz, have 8365 columns in 42 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dz3A/nostruct-align/1dz3A.t2k-thin90.a2m.gz
# 1dz3A.t2k-thin90.a2m with 1538 sequences, total weight= 1333.53 avg weight= 0.867053 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30385 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dz3A/info/1dz3A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dz3A/nostruct-align/1dz3A.t2k-thin90.a2m.gz, have 8488 columns in 43 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o2dA/nostruct-align/1o2dA.t2k-thin90.a2m.gz
# 1o2dA.t2k-thin90.a2m with 268 sequences, total weight= 268 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26689 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o2dA/info/1o2dA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o2dA/nostruct-align/1o2dA.t2k-thin90.a2m.gz, have 8847 columns in 44 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qu9A/nostruct-align/1qu9A.t2k-thin90.a2m.gz
# 1qu9A.t2k-thin90.a2m with 370 sequences, total weight= 151.681 avg weight= 0.40995 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30185 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qu9A/info/1qu9A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qu9A/nostruct-align/1qu9A.t2k-thin90.a2m.gz, have 8974 columns in 45 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rqwA/nostruct-align/1rqwA.t2k-thin90.a2m.gz
# 1rqwA.t2k-thin90.a2m with 116 sequences, total weight= 12.722 avg weight= 0.109672 33 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rqwA/info/1rqwA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rqwA/nostruct-align/1rqwA.t2k-thin90.a2m.gz, have 9181 columns in 46 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m9xC/nostruct-align/1m9xC.t2k-thin90.a2m.gz
# 1m9xC.t2k-thin90.a2m with 479 sequences, total weight= 19.8392 avg weight= 0.0414179 30 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m9xC/info/1m9xC.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m9xC/nostruct-align/1m9xC.t2k-thin90.a2m.gz, have 9327 columns in 47 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1ruwA/nostruct-align/1ruwA.t2k-thin90.a2m.gz
# 1ruwA.t2k-thin90.a2m with 808 sequences, total weight= 62.8542 avg weight= 0.0777898 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1ruwA/info/1ruwA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1ruwA/nostruct-align/1ruwA.t2k-thin90.a2m.gz, have 9396 columns in 48 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p5zB/nostruct-align/1p5zB.t2k-thin90.a2m.gz
# 1p5zB.t2k-thin90.a2m with 99 sequences, total weight= 99 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1353 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p5zB/info/1p5zB.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1p5zB/nostruct-align/1p5zB.t2k-thin90.a2m.gz, have 9625 columns in 49 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1khxA/nostruct-align/1khxA.t2k-thin90.a2m.gz
# 1khxA.t2k-thin90.a2m with 30 sequences, total weight= 14.2613 avg weight= 0.475378 27 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1khxA/info/1khxA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1khxA/nostruct-align/1khxA.t2k-thin90.a2m.gz, have 9828 columns in 50 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hbnC/nostruct-align/1hbnC.t2k-thin90.a2m.gz
# 1hbnC.t2k-thin90.a2m with 12 sequences, total weight= 2.9696 avg weight= 0.247466 14 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hbnC/info/1hbnC.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hbnC/nostruct-align/1hbnC.t2k-thin90.a2m.gz, have 10075 columns in 51 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bm8/nostruct-align/1bm8.t2k-thin90.a2m.gz
# 1bm8.t2k-thin90.a2m with 15 sequences, total weight= 9.60539 avg weight= 0.64036 21 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bm8/info/1bm8.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1b/1bm8/nostruct-align/1bm8.t2k-thin90.a2m.gz, have 10174 columns in 52 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2n/2nlrA/nostruct-align/2nlrA.t2k-thin90.a2m.gz
# 2nlrA.t2k-thin90.a2m with 45 sequences, total weight= 27.9667 avg weight= 0.621481 34 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2n/2nlrA/info/2nlrA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/2n/2nlrA/nostruct-align/2nlrA.t2k-thin90.a2m.gz, have 10396 columns in 53 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uebA/nostruct-align/1uebA.t2k-thin90.a2m.gz
# 1uebA.t2k-thin90.a2m with 172 sequences, total weight= 21.4323 avg weight= 0.124606 43 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uebA/info/1uebA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uebA/nostruct-align/1uebA.t2k-thin90.a2m.gz, have 10580 columns in 54 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dytA/nostruct-align/1dytA.t2k-thin90.a2m.gz
# 1dytA.t2k-thin90.a2m with 165 sequences, total weight= 24.5931 avg weight= 0.149049 37 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dytA/info/1dytA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dytA/nostruct-align/1dytA.t2k-thin90.a2m.gz, have 10713 columns in 55 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rreA/nostruct-align/1rreA.t2k-thin90.a2m.gz
# 1rreA.t2k-thin90.a2m with 380 sequences, total weight= 173.824 avg weight= 0.457432 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30394 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rreA/info/1rreA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rreA/nostruct-align/1rreA.t2k-thin90.a2m.gz, have 10895 columns in 56 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iwlA/nostruct-align/1iwlA.t2k-thin90.a2m.gz
# 1iwlA.t2k-thin90.a2m with 60 sequences, total weight= 60 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22274 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iwlA/info/1iwlA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1iwlA/nostruct-align/1iwlA.t2k-thin90.a2m.gz, have 11072 columns in 57 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2b/2biiA/nostruct-align/2biiA.t2k-thin90.a2m.gz
# 2biiA.t2k-thin90.a2m with 227 sequences, total weight= 54.2712 avg weight= 0.23908 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2b/2biiA/info/2biiA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/2b/2biiA/nostruct-align/2biiA.t2k-thin90.a2m.gz, have 11487 columns in 58 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1evyA/nostruct-align/1evyA.t2k-thin90.a2m.gz
# 1evyA.t2k-thin90.a2m with 227 sequences, total weight= 78.2587 avg weight= 0.344752 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1evyA/info/1evyA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1evyA/nostruct-align/1evyA.t2k-thin90.a2m.gz, have 11833 columns in 59 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2p/2pvbA/nostruct-align/2pvbA.t2k-thin90.a2m.gz
# 2pvbA.t2k-thin90.a2m with 586 sequences, total weight= 586 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26945 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2p/2pvbA/info/2pvbA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/2p/2pvbA/nostruct-align/2pvbA.t2k-thin90.a2m.gz, have 11940 columns in 60 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jcdA/nostruct-align/1jcdA.t2k-thin90.a2m.gz
# 1jcdA.t2k-thin90.a2m with 9 sequences, total weight= 5.12699 avg weight= 0.569666 17 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jcdA/info/1jcdA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jcdA/nostruct-align/1jcdA.t2k-thin90.a2m.gz, have 11990 columns in 61 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a2pA/nostruct-align/1a2pA.t2k-thin90.a2m.gz
# 1a2pA.t2k-thin90.a2m with 22 sequences, total weight= 7.1617 avg weight= 0.325532 22 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1a2pA/info/1a2pA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1a/1a2pA/nostruct-align/1a2pA.t2k-thin90.a2m.gz, have 12098 columns in 62 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fn9A/nostruct-align/1fn9A.t2k-thin90.a2m.gz
# 1fn9A.t2k-thin90.a2m with 8 sequences, total weight= 4.86247 avg weight= 0.607809 10 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fn9A/info/1fn9A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fn9A/nostruct-align/1fn9A.t2k-thin90.a2m.gz, have 12463 columns in 63 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rfyA/nostruct-align/1rfyA.t2k-thin90.a2m.gz
# 1rfyA.t2k-thin90.a2m with 2 sequences, total weight= 1.97122 avg weight= 0.985608 6 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rfyA/info/1rfyA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rfyA/nostruct-align/1rfyA.t2k-thin90.a2m.gz, have 12552 columns in 64 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n1jB/nostruct-align/1n1jB.t2k-thin90.a2m.gz
# 1n1jB.t2k-thin90.a2m with 125 sequences, total weight= 40.2408 avg weight= 0.321927 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n1jB/info/1n1jB.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n1jB/nostruct-align/1n1jB.t2k-thin90.a2m.gz, have 12630 columns in 65 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1y0yA/nostruct-align/1y0yA.t2k-thin90.a2m.gz
# 1y0yA.t2k-thin90.a2m with 228 sequences, total weight= 228 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.06807 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1y0yA/info/1y0yA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1y/1y0yA/nostruct-align/1y0yA.t2k-thin90.a2m.gz, have 12965 columns in 66 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j27A/nostruct-align/1j27A.t2k-thin90.a2m.gz
# 1j27A.t2k-thin90.a2m with 20 sequences, total weight= 11.966 avg weight= 0.598298 24 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j27A/info/1j27A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j27A/nostruct-align/1j27A.t2k-thin90.a2m.gz, have 13063 columns in 67 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g12A/nostruct-align/1g12A.t2k-thin90.a2m.gz
# 1g12A.t2k-thin90.a2m with 15 sequences, total weight= 9.12035 avg weight= 0.608024 21 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g12A/info/1g12A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1g12A/nostruct-align/1g12A.t2k-thin90.a2m.gz, have 13230 columns in 68 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1ng6A/nostruct-align/1ng6A.t2k-thin90.a2m.gz
# 1ng6A.t2k-thin90.a2m with 74 sequences, total weight= 21.3911 avg weight= 0.289068 37 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1ng6A/info/1ng6A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1ng6A/nostruct-align/1ng6A.t2k-thin90.a2m.gz, have 13378 columns in 69 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q7zA/nostruct-align/1q7zA.t2k-thin90.a2m.gz
# 1q7zA.t2k-thin90.a2m with 766 sequences, total weight= 206.904 avg weight= 0.27011 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30218 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q7zA/info/1q7zA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q7zA/nostruct-align/1q7zA.t2k-thin90.a2m.gz, have 13937 columns in 70 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1ybkA/nostruct-align/1ybkA.t2k-thin90.a2m.gz
# 1ybkA.t2k-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.59493 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1ybkA/info/1ybkA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1y/1ybkA/nostruct-align/1ybkA.t2k-thin90.a2m.gz, have 13989 columns in 71 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nc5A/nostruct-align/1nc5A.t2k-thin90.a2m.gz
# 1nc5A.t2k-thin90.a2m with 27 sequences, total weight= 24.7578 avg weight= 0.916956 26 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nc5A/info/1nc5A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nc5A/nostruct-align/1nc5A.t2k-thin90.a2m.gz, have 14352 columns in 72 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1llmC/nostruct-align/1llmC.t2k-thin90.a2m.gz
# 1llmC.t2k-thin90.a2m with 6187 sequences, total weight= 238.434 avg weight= 0.0385378 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3238 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1llmC/info/1llmC.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1l/1llmC/nostruct-align/1llmC.t2k-thin90.a2m.gz, have 14439 columns in 73 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1su8A/nostruct-align/1su8A.t2k-thin90.a2m.gz
# 1su8A.t2k-thin90.a2m with 73 sequences, total weight= 34.6629 avg weight= 0.474835 38 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1su8A/info/1su8A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1s/1su8A/nostruct-align/1su8A.t2k-thin90.a2m.gz, have 15072 columns in 74 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mba/nostruct-align/1mba.t2k-thin90.a2m.gz
# 1mba.t2k-thin90.a2m with 293 sequences, total weight= 185.031 avg weight= 0.631507 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30236 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mba/info/1mba.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mba/nostruct-align/1mba.t2k-thin90.a2m.gz, have 15218 columns in 75 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tjxA/nostruct-align/1tjxA.t2k-thin90.a2m.gz
# 1tjxA.t2k-thin90.a2m with 1107 sequences, total weight= 1107 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1443 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tjxA/info/1tjxA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tjxA/nostruct-align/1tjxA.t2k-thin90.a2m.gz, have 15374 columns in 76 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n8vA/nostruct-align/1n8vA.t2k-thin90.a2m.gz
# 1n8vA.t2k-thin90.a2m with 38 sequences, total weight= 8.97313 avg weight= 0.236135 27 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n8vA/info/1n8vA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n8vA/nostruct-align/1n8vA.t2k-thin90.a2m.gz, have 15475 columns in 77 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f1uA/nostruct-align/1f1uA.t2k-thin90.a2m.gz
# 1f1uA.t2k-thin90.a2m with 282 sequences, total weight= 282 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1185 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f1uA/info/1f1uA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f1uA/nostruct-align/1f1uA.t2k-thin90.a2m.gz, have 15797 columns in 78 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tqjA/nostruct-align/1tqjA.t2k-thin90.a2m.gz
# 1tqjA.t2k-thin90.a2m with 224 sequences, total weight= 24.5178 avg weight= 0.109454 45 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tqjA/info/1tqjA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tqjA/nostruct-align/1tqjA.t2k-thin90.a2m.gz, have 16014 columns in 79 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oneA/nostruct-align/1oneA.t2k-thin90.a2m.gz
# 1oneA.t2k-thin90.a2m with 196 sequences, total weight= 24.2113 avg weight= 0.123527 35 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oneA/info/1oneA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oneA/nostruct-align/1oneA.t2k-thin90.a2m.gz, have 16450 columns in 80 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gskA/nostruct-align/1gskA.t2k-thin90.a2m.gz
# 1gskA.t2k-thin90.a2m with 252 sequences, total weight= 252 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17939 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gskA/info/1gskA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gskA/nostruct-align/1gskA.t2k-thin90.a2m.gz, have 16952 columns in 81 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j3aA/nostruct-align/1j3aA.t2k-thin90.a2m.gz
# 1j3aA.t2k-thin90.a2m with 138 sequences, total weight= 33.5217 avg weight= 0.242911 39 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j3aA/info/1j3aA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j3aA/nostruct-align/1j3aA.t2k-thin90.a2m.gz, have 17081 columns in 82 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dgwA/nostruct-align/1dgwA.t2k-thin90.a2m.gz
# 1dgwA.t2k-thin90.a2m with 144 sequences, total weight= 109.339 avg weight= 0.759296 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3004 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dgwA/info/1dgwA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dgwA/nostruct-align/1dgwA.t2k-thin90.a2m.gz, have 17259 columns in 83 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w50A/nostruct-align/1w50A.t2k-thin90.a2m.gz
# 1w50A.t2k-thin90.a2m with 641 sequences, total weight= 641 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29848 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w50A/info/1w50A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1w50A/nostruct-align/1w50A.t2k-thin90.a2m.gz, have 17636 columns in 84 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gx5A/nostruct-align/1gx5A.t2k-thin90.a2m.gz
# 1gx5A.t2k-thin90.a2m with 143 sequences, total weight= 41.7708 avg weight= 0.292103 30 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gx5A/info/1gx5A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gx5A/nostruct-align/1gx5A.t2k-thin90.a2m.gz, have 18166 columns in 85 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mun/nostruct-align/1mun.t2k-thin90.a2m.gz
# 1mun.t2k-thin90.a2m with 295 sequences, total weight= 103.681 avg weight= 0.351462 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30147 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mun/info/1mun.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mun/nostruct-align/1mun.t2k-thin90.a2m.gz, have 18391 columns in 86 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v54B/nostruct-align/1v54B.t2k-thin90.a2m.gz
# 1v54B.t2k-thin90.a2m with 1039 sequences, total weight= 63.9564 avg weight= 0.0615557 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30051 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v54B/info/1v54B.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v54B/nostruct-align/1v54B.t2k-thin90.a2m.gz, have 18618 columns in 87 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1owlA/nostruct-align/1owlA.t2k-thin90.a2m.gz
# 1owlA.t2k-thin90.a2m with 874 sequences, total weight= 874 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27323 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1owlA/info/1owlA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1owlA/nostruct-align/1owlA.t2k-thin90.a2m.gz, have 19091 columns in 88 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rrmA/nostruct-align/1rrmA.t2k-thin90.a2m.gz
# 1rrmA.t2k-thin90.a2m with 438 sequences, total weight= 438 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2954 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rrmA/info/1rrmA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rrmA/nostruct-align/1rrmA.t2k-thin90.a2m.gz, have 19476 columns in 89 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d0dA/nostruct-align/1d0dA.t2k-thin90.a2m.gz
# 1d0dA.t2k-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20764 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d0dA/info/1d0dA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1d/1d0dA/nostruct-align/1d0dA.t2k-thin90.a2m.gz, have 19536 columns in 90 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ibyA/nostruct-align/1ibyA.t2k-thin90.a2m.gz
# 1ibyA.t2k-thin90.a2m with 93 sequences, total weight= 61.9503 avg weight= 0.666132 42 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ibyA/info/1ibyA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1ibyA/nostruct-align/1ibyA.t2k-thin90.a2m.gz, have 19648 columns in 91 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o82A/nostruct-align/1o82A.t2k-thin90.a2m.gz
# 1o82A.t2k-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.634682 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o82A/info/1o82A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o82A/nostruct-align/1o82A.t2k-thin90.a2m.gz, have 19718 columns in 92 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1brt/nostruct-align/1brt.t2k-thin90.a2m.gz
# 1brt.t2k-thin90.a2m with 681 sequences, total weight= 681 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.817764 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1brt/info/1brt.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1b/1brt/nostruct-align/1brt.t2k-thin90.a2m.gz, have 19995 columns in 93 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oqqA/nostruct-align/1oqqA.t2k-thin90.a2m.gz
# 1oqqA.t2k-thin90.a2m with 227 sequences, total weight= 93.4123 avg weight= 0.411508 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30036 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oqqA/info/1oqqA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oqqA/nostruct-align/1oqqA.t2k-thin90.a2m.gz, have 20101 columns in 94 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nrjB/nostruct-align/1nrjB.t2k-thin90.a2m.gz
# 1nrjB.t2k-thin90.a2m with 431 sequences, total weight= 431 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0254 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nrjB/info/1nrjB.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nrjB/nostruct-align/1nrjB.t2k-thin90.a2m.gz, have 20292 columns in 95 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1behA/nostruct-align/1behA.t2k-thin90.a2m.gz
# 1behA.t2k-thin90.a2m with 124 sequences, total weight= 60.7414 avg weight= 0.48985 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1behA/info/1behA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1b/1behA/nostruct-align/1behA.t2k-thin90.a2m.gz, have 20476 columns in 96 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gvjA/nostruct-align/1gvjA.t2k-thin90.a2m.gz
# 1gvjA.t2k-thin90.a2m with 92 sequences, total weight= 30.3828 avg weight= 0.330248 39 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gvjA/info/1gvjA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gvjA/nostruct-align/1gvjA.t2k-thin90.a2m.gz, have 20617 columns in 97 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sgwA/nostruct-align/1sgwA.t2k-thin90.a2m.gz
# 1sgwA.t2k-thin90.a2m with 13637 sequences, total weight= 10739.3 avg weight= 0.78751 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30823 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sgwA/info/1sgwA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sgwA/nostruct-align/1sgwA.t2k-thin90.a2m.gz, have 20817 columns in 98 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nkiA/nostruct-align/1nkiA.t2k-thin90.a2m.gz
# 1nkiA.t2k-thin90.a2m with 622 sequences, total weight= 622 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07893 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nkiA/info/1nkiA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nkiA/nostruct-align/1nkiA.t2k-thin90.a2m.gz, have 20951 columns in 99 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tfzA/nostruct-align/1tfzA.t2k-thin90.a2m.gz
# 1tfzA.t2k-thin90.a2m with 128 sequences, total weight= 40.8223 avg weight= 0.318924 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tfzA/info/1tfzA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tfzA/nostruct-align/1tfzA.t2k-thin90.a2m.gz, have 21315 columns in 100 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rv9A/nostruct-align/1rv9A.t2k-thin90.a2m.gz
# 1rv9A.t2k-thin90.a2m with 135 sequences, total weight= 35.874 avg weight= 0.265733 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rv9A/info/1rv9A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rv9A/nostruct-align/1rv9A.t2k-thin90.a2m.gz, have 21557 columns in 101 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1ypyA/nostruct-align/1ypyA.t2k-thin90.a2m.gz
# 1ypyA.t2k-thin90.a2m with 28 sequences, total weight= 11.3356 avg weight= 0.404843 27 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1ypyA/info/1ypyA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1y/1ypyA/nostruct-align/1ypyA.t2k-thin90.a2m.gz, have 21739 columns in 102 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mg7A/nostruct-align/1mg7A.t2k-thin90.a2m.gz
# 1mg7A.t2k-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.58081 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mg7A/info/1mg7A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mg7A/nostruct-align/1mg7A.t2k-thin90.a2m.gz, have 22090 columns in 103 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1us5A/nostruct-align/1us5A.t2k-thin90.a2m.gz
# 1us5A.t2k-thin90.a2m with 268 sequences, total weight= 268 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01054 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1us5A/info/1us5A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1us5A/nostruct-align/1us5A.t2k-thin90.a2m.gz, have 22387 columns in 104 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1ctf/nostruct-align/1ctf.t2k-thin90.a2m.gz
# 1ctf.t2k-thin90.a2m with 152 sequences, total weight= 7.64956 avg weight= 0.0503261 30 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1ctf/info/1ctf.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1c/1ctf/nostruct-align/1ctf.t2k-thin90.a2m.gz, have 22455 columns in 105 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gai/nostruct-align/1gai.t2k-thin90.a2m.gz
# 1gai.t2k-thin90.a2m with 54 sequences, total weight= 49.1124 avg weight= 0.909488 30 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gai/info/1gai.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gai/nostruct-align/1gai.t2k-thin90.a2m.gz, have 22927 columns in 106 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jsdB/nostruct-align/1jsdB.t2k-thin90.a2m.gz
# 1jsdB.t2k-thin90.a2m with 18 sequences, total weight= 3.74919 avg weight= 0.208288 17 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jsdB/info/1jsdB.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jsdB/nostruct-align/1jsdB.t2k-thin90.a2m.gz, have 23087 columns in 107 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e9gA/nostruct-align/1e9gA.t2k-thin90.a2m.gz
# 1e9gA.t2k-thin90.a2m with 139 sequences, total weight= 27.9031 avg weight= 0.200742 36 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e9gA/info/1e9gA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e9gA/nostruct-align/1e9gA.t2k-thin90.a2m.gz, have 23371 columns in 108 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lucA/nostruct-align/1lucA.t2k-thin90.a2m.gz
# 1lucA.t2k-thin90.a2m with 272 sequences, total weight= 272 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08065 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lucA/info/1lucA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lucA/nostruct-align/1lucA.t2k-thin90.a2m.gz, have 23697 columns in 109 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mtyG/nostruct-align/1mtyG.t2k-thin90.a2m.gz
# 1mtyG.t2k-thin90.a2m with 5 sequences, total weight= 3.65052 avg weight= 0.730104 12 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mtyG/info/1mtyG.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mtyG/nostruct-align/1mtyG.t2k-thin90.a2m.gz, have 23859 columns in 110 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s5aA/nostruct-align/1s5aA.t2k-thin90.a2m.gz
# 1s5aA.t2k-thin90.a2m with 45 sequences, total weight= 45 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05894 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s5aA/info/1s5aA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1s/1s5aA/nostruct-align/1s5aA.t2k-thin90.a2m.gz, have 23998 columns in 111 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1ntvA/nostruct-align/1ntvA.t2k-thin90.a2m.gz
# 1ntvA.t2k-thin90.a2m with 28 sequences, total weight= 25.0537 avg weight= 0.894776 29 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1ntvA/info/1ntvA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1ntvA/nostruct-align/1ntvA.t2k-thin90.a2m.gz, have 24150 columns in 112 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h1nA/nostruct-align/1h1nA.t2k-thin90.a2m.gz
# 1h1nA.t2k-thin90.a2m with 126 sequences, total weight= 126 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10131 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h1nA/info/1h1nA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h1nA/nostruct-align/1h1nA.t2k-thin90.a2m.gz, have 24455 columns in 113 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sx7A/nostruct-align/1sx7A.t2k-thin90.a2m.gz
# 1sx7A.t2k-thin90.a2m with 53 sequences, total weight= 33.5838 avg weight= 0.633657 31 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sx7A/info/1sx7A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sx7A/nostruct-align/1sx7A.t2k-thin90.a2m.gz, have 24619 columns in 114 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s29A/nostruct-align/1s29A.t2k-thin90.a2m.gz
# 1s29A.t2k-thin90.a2m with 73 sequences, total weight= 23.699 avg weight= 0.324644 41 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s29A/info/1s29A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1s/1s29A/nostruct-align/1s29A.t2k-thin90.a2m.gz, have 24711 columns in 115 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f8mA/nostruct-align/1f8mA.t2k-thin90.a2m.gz
# 1f8mA.t2k-thin90.a2m with 153 sequences, total weight= 39.2484 avg weight= 0.256525 40 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f8mA/info/1f8mA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f8mA/nostruct-align/1f8mA.t2k-thin90.a2m.gz, have 25138 columns in 116 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1earA/nostruct-align/1earA.t2k-thin90.a2m.gz
# 1earA.t2k-thin90.a2m with 60 sequences, total weight= 33.1714 avg weight= 0.552857 43 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1earA/info/1earA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1earA/nostruct-align/1earA.t2k-thin90.a2m.gz, have 25280 columns in 117 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r9wA/nostruct-align/1r9wA.t2k-thin90.a2m.gz
# 1r9wA.t2k-thin90.a2m with 83 sequences, total weight= 11.0144 avg weight= 0.132703 32 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r9wA/info/1r9wA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r9wA/nostruct-align/1r9wA.t2k-thin90.a2m.gz, have 25418 columns in 118 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1woqA/nostruct-align/1woqA.t2k-thin90.a2m.gz
# 1woqA.t2k-thin90.a2m with 459 sequences, total weight= 459 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21778 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1woqA/info/1woqA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1woqA/nostruct-align/1woqA.t2k-thin90.a2m.gz, have 25671 columns in 119 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xubA/nostruct-align/1xubA.t2k-thin90.a2m.gz
# 1xubA.t2k-thin90.a2m with 172 sequences, total weight= 91.9367 avg weight= 0.534516 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30136 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xubA/info/1xubA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1xubA/nostruct-align/1xubA.t2k-thin90.a2m.gz, have 25949 columns in 120 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vimA/nostruct-align/1vimA.t2k-thin90.a2m.gz
# 1vimA.t2k-thin90.a2m with 621 sequences, total weight= 621 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12825 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vimA/info/1vimA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vimA/nostruct-align/1vimA.t2k-thin90.a2m.gz, have 26141 columns in 121 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eluA/nostruct-align/1eluA.t2k-thin90.a2m.gz
# 1eluA.t2k-thin90.a2m with 280 sequences, total weight= 280 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01627 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eluA/info/1eluA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1eluA/nostruct-align/1eluA.t2k-thin90.a2m.gz, have 26522 columns in 122 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m65A/nostruct-align/1m65A.t2k-thin90.a2m.gz
# 1m65A.t2k-thin90.a2m with 126 sequences, total weight= 126 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15377 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m65A/info/1m65A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m65A/nostruct-align/1m65A.t2k-thin90.a2m.gz, have 26756 columns in 123 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1whzA/nostruct-align/1whzA.t2k-thin90.a2m.gz
# 1whzA.t2k-thin90.a2m with 58 sequences, total weight= 27.8907 avg weight= 0.480874 35 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1whzA/info/1whzA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1whzA/nostruct-align/1whzA.t2k-thin90.a2m.gz, have 26826 columns in 124 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e2kA/nostruct-align/1e2kA.t2k-thin90.a2m.gz
# 1e2kA.t2k-thin90.a2m with 38 sequences, total weight= 26.756 avg weight= 0.704106 31 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e2kA/info/1e2kA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e2kA/nostruct-align/1e2kA.t2k-thin90.a2m.gz, have 27134 columns in 125 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cs6A/nostruct-align/1cs6A.t2k-thin90.a2m.gz
# 1cs6A.t2k-thin90.a2m with 1532 sequences, total weight= 1532 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.848894 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cs6A/info/1cs6A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cs6A/nostruct-align/1cs6A.t2k-thin90.a2m.gz, have 27516 columns in 126 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1y0hA/nostruct-align/1y0hA.t2k-thin90.a2m.gz
# 1y0hA.t2k-thin90.a2m with 146 sequences, total weight= 146 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.293 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1y0hA/info/1y0hA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1y/1y0hA/nostruct-align/1y0hA.t2k-thin90.a2m.gz, have 27617 columns in 127 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1u7gA/nostruct-align/1u7gA.t2k-thin90.a2m.gz
# 1u7gA.t2k-thin90.a2m with 382 sequences, total weight= 56.3359 avg weight= 0.147476 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30046 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1u7gA/info/1u7gA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1u7gA/nostruct-align/1u7gA.t2k-thin90.a2m.gz, have 28000 columns in 128 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j2lA/nostruct-align/1j2lA.t2k-thin90.a2m.gz
# 1j2lA.t2k-thin90.a2m with 162 sequences, total weight= 12.8903 avg weight= 0.0795699 40 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j2lA/info/1j2lA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j2lA/nostruct-align/1j2lA.t2k-thin90.a2m.gz, have 28068 columns in 129 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kaeA/nostruct-align/1kaeA.t2k-thin90.a2m.gz
# 1kaeA.t2k-thin90.a2m with 124 sequences, total weight= 13.4995 avg weight= 0.108867 39 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kaeA/info/1kaeA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kaeA/nostruct-align/1kaeA.t2k-thin90.a2m.gz, have 28502 columns in 130 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dfmA/nostruct-align/1dfmA.t2k-thin90.a2m.gz
# 1dfmA.t2k-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0014 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dfmA/info/1dfmA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dfmA/nostruct-align/1dfmA.t2k-thin90.a2m.gz, have 28725 columns in 131 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k55A/nostruct-align/1k55A.t2k-thin90.a2m.gz
# 1k55A.t2k-thin90.a2m with 107 sequences, total weight= 76.2367 avg weight= 0.712493 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k55A/info/1k55A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k55A/nostruct-align/1k55A.t2k-thin90.a2m.gz, have 28970 columns in 132 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uk8A/nostruct-align/1uk8A.t2k-thin90.a2m.gz
# 1uk8A.t2k-thin90.a2m with 2008 sequences, total weight= 2008 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.861506 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uk8A/info/1uk8A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uk8A/nostruct-align/1uk8A.t2k-thin90.a2m.gz, have 29241 columns in 133 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hz6A/nostruct-align/1hz6A.t2k-thin90.a2m.gz
# 1hz6A.t2k-thin90.a2m with 5 sequences, total weight= 2.79656 avg weight= 0.559313 9 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hz6A/info/1hz6A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hz6A/nostruct-align/1hz6A.t2k-thin90.a2m.gz, have 29308 columns in 134 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1inlA/nostruct-align/1inlA.t2k-thin90.a2m.gz
# 1inlA.t2k-thin90.a2m with 200 sequences, total weight= 200 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18361 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1inlA/info/1inlA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1inlA/nostruct-align/1inlA.t2k-thin90.a2m.gz, have 29593 columns in 135 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uv7A/nostruct-align/1uv7A.t2k-thin90.a2m.gz
# 1uv7A.t2k-thin90.a2m with 18 sequences, total weight= 10.4636 avg weight= 0.581313 23 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uv7A/info/1uv7A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uv7A/nostruct-align/1uv7A.t2k-thin90.a2m.gz, have 29669 columns in 136 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2b/2bo9B/nostruct-align/2bo9B.t2k-thin90.a2m.gz
# 2bo9B.t2k-thin90.a2m with 14 sequences, total weight= 7.2498 avg weight= 0.517843 19 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2b/2bo9B/info/2bo9B.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/2b/2bo9B/nostruct-align/2bo9B.t2k-thin90.a2m.gz, have 29886 columns in 137 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cxqA/nostruct-align/1cxqA.t2k-thin90.a2m.gz
# 1cxqA.t2k-thin90.a2m with 358 sequences, total weight= 358 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16125 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cxqA/info/1cxqA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cxqA/nostruct-align/1cxqA.t2k-thin90.a2m.gz, have 30029 columns in 138 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bs0A/nostruct-align/1bs0A.t2k-thin90.a2m.gz
# 1bs0A.t2k-thin90.a2m with 471 sequences, total weight= 471 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0836 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bs0A/info/1bs0A.stride-mixed.CB-burial-12-7
WARNING: skipping e, since it is lower case.
# After reading /projects/compbio/experiments/models.97/pdb/1b/1bs0A/nostruct-align/1bs0A.t2k-thin90.a2m.gz, have 30411 columns in 139 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pfbA/nostruct-align/1pfbA.t2k-thin90.a2m.gz
# 1pfbA.t2k-thin90.a2m with 87 sequences, total weight= 25.8579 avg weight= 0.297218 39 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pfbA/info/1pfbA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pfbA/nostruct-align/1pfbA.t2k-thin90.a2m.gz, have 30466 columns in 140 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3s/3sil/nostruct-align/3sil.t2k-thin90.a2m.gz
# 3sil.t2k-thin90.a2m with 79 sequences, total weight= 79 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14397 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3s/3sil/info/3sil.stride-mixed.CB-burial-12-7
WARNING: skipping a, since it is lower case.
# After reading /projects/compbio/experiments/models.97/pdb/3s/3sil/nostruct-align/3sil.t2k-thin90.a2m.gz, have 30844 columns in 141 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vhwA/nostruct-align/1vhwA.t2k-thin90.a2m.gz
# 1vhwA.t2k-thin90.a2m with 207 sequences, total weight= 207 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24044 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vhwA/info/1vhwA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vhwA/nostruct-align/1vhwA.t2k-thin90.a2m.gz, have 31081 columns in 142 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xsvA/nostruct-align/1xsvA.t2k-thin90.a2m.gz
# 1xsvA.t2k-thin90.a2m with 38 sequences, total weight= 12.692 avg weight= 0.334001 32 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xsvA/info/1xsvA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1xsvA/nostruct-align/1xsvA.t2k-thin90.a2m.gz, have 31187 columns in 143 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xqaA/nostruct-align/1xqaA.t2k-thin90.a2m.gz
# 1xqaA.t2k-thin90.a2m with 231 sequences, total weight= 231 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08066 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xqaA/info/1xqaA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1xqaA/nostruct-align/1xqaA.t2k-thin90.a2m.gz, have 31299 columns in 144 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ut1A/nostruct-align/1ut1A.t2k-thin90.a2m.gz
# 1ut1A.t2k-thin90.a2m with 8 sequences, total weight= 5.02289 avg weight= 0.627861 17 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ut1A/info/1ut1A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1ut1A/nostruct-align/1ut1A.t2k-thin90.a2m.gz, have 31439 columns in 145 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mr7A/nostruct-align/1mr7A.t2k-thin90.a2m.gz
# 1mr7A.t2k-thin90.a2m with 801 sequences, total weight= 801 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23684 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mr7A/info/1mr7A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mr7A/nostruct-align/1mr7A.t2k-thin90.a2m.gz, have 31642 columns in 146 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xkpA/nostruct-align/1xkpA.t2k-thin90.a2m.gz
# 1xkpA.t2k-thin90.a2m with 20 sequences, total weight= 20 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27715 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xkpA/info/1xkpA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1xkpA/nostruct-align/1xkpA.t2k-thin90.a2m.gz, have 31873 columns in 147 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r89A/nostruct-align/1r89A.t2k-thin90.a2m.gz
# 1r89A.t2k-thin90.a2m with 19 sequences, total weight= 11.3541 avg weight= 0.597583 26 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r89A/info/1r89A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r89A/nostruct-align/1r89A.t2k-thin90.a2m.gz, have 32310 columns in 148 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gv9A/nostruct-align/1gv9A.t2k-thin90.a2m.gz
# 1gv9A.t2k-thin90.a2m with 59 sequences, total weight= 55.7061 avg weight= 0.944171 36 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gv9A/info/1gv9A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gv9A/nostruct-align/1gv9A.t2k-thin90.a2m.gz, have 32533 columns in 149 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1koe/nostruct-align/1koe.t2k-thin90.a2m.gz
# 1koe.t2k-thin90.a2m with 11 sequences, total weight= 3.60381 avg weight= 0.32762 15 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1koe/info/1koe.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1koe/nostruct-align/1koe.t2k-thin90.a2m.gz, have 32705 columns in 150 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mfgA/nostruct-align/1mfgA.t2k-thin90.a2m.gz
# 1mfgA.t2k-thin90.a2m with 552 sequences, total weight= 552 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22616 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mfgA/info/1mfgA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mfgA/nostruct-align/1mfgA.t2k-thin90.a2m.gz, have 32800 columns in 151 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wmhA/nostruct-align/1wmhA.t2k-thin90.a2m.gz
# 1wmhA.t2k-thin90.a2m with 12 sequences, total weight= 4.23086 avg weight= 0.352572 15 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wmhA/info/1wmhA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1wmhA/nostruct-align/1wmhA.t2k-thin90.a2m.gz, have 32883 columns in 152 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pv5A/nostruct-align/1pv5A.t2k-thin90.a2m.gz
# 1pv5A.t2k-thin90.a2m with 17 sequences, total weight= 17 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24456 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pv5A/info/1pv5A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pv5A/nostruct-align/1pv5A.t2k-thin90.a2m.gz, have 33144 columns in 153 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1psrA/nostruct-align/1psrA.t2k-thin90.a2m.gz
# 1psrA.t2k-thin90.a2m with 201 sequences, total weight= 139.856 avg weight= 0.695801 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1psrA/info/1psrA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1psrA/nostruct-align/1psrA.t2k-thin90.a2m.gz, have 33244 columns in 154 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vj2A/nostruct-align/1vj2A.t2k-thin90.a2m.gz
# 1vj2A.t2k-thin90.a2m with 285 sequences, total weight= 285 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.953633 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vj2A/info/1vj2A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vj2A/nostruct-align/1vj2A.t2k-thin90.a2m.gz, have 33358 columns in 155 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tjyA/nostruct-align/1tjyA.t2k-thin90.a2m.gz
# 1tjyA.t2k-thin90.a2m with 360 sequences, total weight= 360 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1264 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tjyA/info/1tjyA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tjyA/nostruct-align/1tjyA.t2k-thin90.a2m.gz, have 33674 columns in 156 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1smoA/nostruct-align/1smoA.t2k-thin90.a2m.gz
# 1smoA.t2k-thin90.a2m with 1506 sequences, total weight= 96.3919 avg weight= 0.0640052 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30536 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1smoA/info/1smoA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1s/1smoA/nostruct-align/1smoA.t2k-thin90.a2m.gz, have 33787 columns in 157 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kzfA/nostruct-align/1kzfA.t2k-thin90.a2m.gz
# 1kzfA.t2k-thin90.a2m with 58 sequences, total weight= 34.106 avg weight= 0.588034 43 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kzfA/info/1kzfA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kzfA/nostruct-align/1kzfA.t2k-thin90.a2m.gz, have 33985 columns in 158 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nr0A/nostruct-align/1nr0A.t2k-thin90.a2m.gz
# 1nr0A.t2k-thin90.a2m with 2004 sequences, total weight= 2004 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.719045 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nr0A/info/1nr0A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nr0A/nostruct-align/1nr0A.t2k-thin90.a2m.gz, have 34595 columns in 159 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vyrA/nostruct-align/1vyrA.t2k-thin90.a2m.gz
# 1vyrA.t2k-thin90.a2m with 449 sequences, total weight= 115.294 avg weight= 0.25678 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30352 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vyrA/info/1vyrA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vyrA/nostruct-align/1vyrA.t2k-thin90.a2m.gz, have 34958 columns in 160 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nlnA/nostruct-align/1nlnA.t2k-thin90.a2m.gz
# 1nlnA.t2k-thin90.a2m with 25 sequences, total weight= 4.81714 avg weight= 0.192685 23 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nlnA/info/1nlnA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nlnA/nostruct-align/1nlnA.t2k-thin90.a2m.gz, have 35161 columns in 161 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hdhA/nostruct-align/1hdhA.t2k-thin90.a2m.gz
# 1hdhA.t2k-thin90.a2m with 361 sequences, total weight= 361 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0361 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hdhA/info/1hdhA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hdhA/nostruct-align/1hdhA.t2k-thin90.a2m.gz, have 35686 columns in 162 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vp6A/nostruct-align/1vp6A.t2k-thin90.a2m.gz
# 1vp6A.t2k-thin90.a2m with 778 sequences, total weight= 778 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20745 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vp6A/info/1vp6A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vp6A/nostruct-align/1vp6A.t2k-thin90.a2m.gz, have 35819 columns in 163 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eb6A/nostruct-align/1eb6A.t2k-thin90.a2m.gz
# 1eb6A.t2k-thin90.a2m with 19 sequences, total weight= 14.824 avg weight= 0.780212 23 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eb6A/info/1eb6A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1eb6A/nostruct-align/1eb6A.t2k-thin90.a2m.gz, have 35996 columns in 164 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v5vA/nostruct-align/1v5vA.t2k-thin90.a2m.gz
# 1v5vA.t2k-thin90.a2m with 335 sequences, total weight= 231.872 avg weight= 0.692155 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30074 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v5vA/info/1v5vA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v5vA/nostruct-align/1v5vA.t2k-thin90.a2m.gz, have 36395 columns in 165 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1yo3A/nostruct-align/1yo3A.t2k-thin90.a2m.gz
# 1yo3A.t2k-thin90.a2m with 83 sequences, total weight= 23.0472 avg weight= 0.277678 41 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1yo3A/info/1yo3A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1y/1yo3A/nostruct-align/1yo3A.t2k-thin90.a2m.gz, have 36480 columns in 166 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r9dA/nostruct-align/1r9dA.t2k-thin90.a2m.gz
# 1r9dA.t2k-thin90.a2m with 68 sequences, total weight= 27.2636 avg weight= 0.400936 36 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r9dA/info/1r9dA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r9dA/nostruct-align/1r9dA.t2k-thin90.a2m.gz, have 37266 columns in 167 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gk9B/nostruct-align/1gk9B.t2k-thin90.a2m.gz
# 1gk9B.t2k-thin90.a2m with 67 sequences, total weight= 67 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20955 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gk9B/info/1gk9B.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gk9B/nostruct-align/1gk9B.t2k-thin90.a2m.gz, have 37823 columns in 168 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1x91A/nostruct-align/1x91A.t2k-thin90.a2m.gz
# 1x91A.t2k-thin90.a2m with 123 sequences, total weight= 123 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10374 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1x91A/info/1x91A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1x91A/nostruct-align/1x91A.t2k-thin90.a2m.gz, have 37972 columns in 169 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l9lA/nostruct-align/1l9lA.t2k-thin90.a2m.gz
# 1l9lA.t2k-thin90.a2m with 73 sequences, total weight= 65.7085 avg weight= 0.900116 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l9lA/info/1l9lA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1l/1l9lA/nostruct-align/1l9lA.t2k-thin90.a2m.gz, have 38046 columns in 170 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vlpA/nostruct-align/1vlpA.t2k-thin90.a2m.gz
# 1vlpA.t2k-thin90.a2m with 127 sequences, total weight= 31.4914 avg weight= 0.247964 44 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vlpA/info/1vlpA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vlpA/nostruct-align/1vlpA.t2k-thin90.a2m.gz, have 38464 columns in 171 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vjuA/nostruct-align/1vjuA.t2k-thin90.a2m.gz
# 1vjuA.t2k-thin90.a2m with 356 sequences, total weight= 12.0155 avg weight= 0.0337515 38 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vjuA/info/1vjuA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vjuA/nostruct-align/1vjuA.t2k-thin90.a2m.gz, have 38755 columns in 172 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ogwA/nostruct-align/1ogwA.t2k-thin90.a2m.gz
# 1ogwA.t2k-thin90.a2m with 304 sequences, total weight= 159.027 avg weight= 0.523115 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30299 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ogwA/info/1ogwA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1ogwA/nostruct-align/1ogwA.t2k-thin90.a2m.gz, have 38831 columns in 173 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r1tA/nostruct-align/1r1tA.t2k-thin90.a2m.gz
# 1r1tA.t2k-thin90.a2m with 614 sequences, total weight= 107.973 avg weight= 0.175852 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30049 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r1tA/info/1r1tA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r1tA/nostruct-align/1r1tA.t2k-thin90.a2m.gz, have 38929 columns in 174 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h03P/nostruct-align/1h03P.t2k-thin90.a2m.gz
# 1h03P.t2k-thin90.a2m with 623 sequences, total weight= 623 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10605 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h03P/info/1h03P.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h03P/nostruct-align/1h03P.t2k-thin90.a2m.gz, have 39054 columns in 175 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w4xA/nostruct-align/1w4xA.t2k-thin90.a2m.gz
# 1w4xA.t2k-thin90.a2m with 1145 sequences, total weight= 1145 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.862608 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w4xA/info/1w4xA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1w4xA/nostruct-align/1w4xA.t2k-thin90.a2m.gz, have 39587 columns in 176 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vjpA/nostruct-align/1vjpA.t2k-thin90.a2m.gz
# 1vjpA.t2k-thin90.a2m with 77 sequences, total weight= 25.7395 avg weight= 0.33428 35 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vjpA/info/1vjpA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vjpA/nostruct-align/1vjpA.t2k-thin90.a2m.gz, have 39969 columns in 177 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h6lA/nostruct-align/1h6lA.t2k-thin90.a2m.gz
# 1h6lA.t2k-thin90.a2m with 18 sequences, total weight= 13.7876 avg weight= 0.765976 21 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h6lA/info/1h6lA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h6lA/nostruct-align/1h6lA.t2k-thin90.a2m.gz, have 40322 columns in 178 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oywA/nostruct-align/1oywA.t2k-thin90.a2m.gz
# 1oywA.t2k-thin90.a2m with 1703 sequences, total weight= 1703 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.96965 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oywA/info/1oywA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oywA/nostruct-align/1oywA.t2k-thin90.a2m.gz, have 40838 columns in 179 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fp2A/nostruct-align/1fp2A.t2k-thin90.a2m.gz
# 1fp2A.t2k-thin90.a2m with 215 sequences, total weight= 215 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14267 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fp2A/info/1fp2A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fp2A/nostruct-align/1fp2A.t2k-thin90.a2m.gz, have 41183 columns in 180 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v9fA/nostruct-align/1v9fA.t2k-thin90.a2m.gz
# 1v9fA.t2k-thin90.a2m with 559 sequences, total weight= 326.21 avg weight= 0.58356 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30326 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v9fA/info/1v9fA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v9fA/nostruct-align/1v9fA.t2k-thin90.a2m.gz, have 41433 columns in 181 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qwgA/nostruct-align/1qwgA.t2k-thin90.a2m.gz
# 1qwgA.t2k-thin90.a2m with 12 sequences, total weight= 10.0278 avg weight= 0.835649 20 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qwgA/info/1qwgA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qwgA/nostruct-align/1qwgA.t2k-thin90.a2m.gz, have 41684 columns in 182 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f7lA/nostruct-align/1f7lA.t2k-thin90.a2m.gz
# 1f7lA.t2k-thin90.a2m with 132 sequences, total weight= 72.1113 avg weight= 0.546298 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30035 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f7lA/info/1f7lA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f7lA/nostruct-align/1f7lA.t2k-thin90.a2m.gz, have 41802 columns in 183 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nbcA/nostruct-align/1nbcA.t2k-thin90.a2m.gz
# 1nbcA.t2k-thin90.a2m with 56 sequences, total weight= 34.1981 avg weight= 0.610681 40 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nbcA/info/1nbcA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nbcA/nostruct-align/1nbcA.t2k-thin90.a2m.gz, have 41957 columns in 184 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1my7A/nostruct-align/1my7A.t2k-thin90.a2m.gz
# 1my7A.t2k-thin90.a2m with 31 sequences, total weight= 12.2336 avg weight= 0.394633 27 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1my7A/info/1my7A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1my7A/nostruct-align/1my7A.t2k-thin90.a2m.gz, have 42064 columns in 185 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xu9A/nostruct-align/1xu9A.t2k-thin90.a2m.gz
# 1xu9A.t2k-thin90.a2m with 5583 sequences, total weight= 4500.83 avg weight= 0.806166 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30657 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xu9A/info/1xu9A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1xu9A/nostruct-align/1xu9A.t2k-thin90.a2m.gz, have 42333 columns in 186 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t6t1/nostruct-align/1t6t1.t2k-thin90.a2m.gz
# 1t6t1.t2k-thin90.a2m with 70 sequences, total weight= 45.3542 avg weight= 0.647917 40 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t6t1/info/1t6t1.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t6t1/nostruct-align/1t6t1.t2k-thin90.a2m.gz, have 42441 columns in 187 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ek6A/nostruct-align/1ek6A.t2k-thin90.a2m.gz
# 1ek6A.t2k-thin90.a2m with 688 sequences, total weight= 688 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.995574 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ek6A/info/1ek6A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1ek6A/nostruct-align/1ek6A.t2k-thin90.a2m.gz, have 42787 columns in 188 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ey4A/nostruct-align/1ey4A.t2k-thin90.a2m.gz
# 1ey4A.t2k-thin90.a2m with 160 sequences, total weight= 160 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26681 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ey4A/info/1ey4A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1ey4A/nostruct-align/1ey4A.t2k-thin90.a2m.gz, have 42923 columns in 189 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gvzA/nostruct-align/1gvzA.t2k-thin90.a2m.gz
# 1gvzA.t2k-thin90.a2m with 1374 sequences, total weight= 1230.99 avg weight= 0.895919 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30247 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gvzA/info/1gvzA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gvzA/nostruct-align/1gvzA.t2k-thin90.a2m.gz, have 43160 columns in 190 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gz8A/nostruct-align/1gz8A.t2k-thin90.a2m.gz
# 1gz8A.t2k-thin90.a2m with 5289 sequences, total weight= 5289 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09443 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gz8A/info/1gz8A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gz8A/nostruct-align/1gz8A.t2k-thin90.a2m.gz, have 43451 columns in 191 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1ynbA/nostruct-align/1ynbA.t2k-thin90.a2m.gz
# 1ynbA.t2k-thin90.a2m with 99 sequences, total weight= 68.6443 avg weight= 0.693376 44 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1ynbA/info/1ynbA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1y/1ynbA/nostruct-align/1ynbA.t2k-thin90.a2m.gz, have 43618 columns in 192 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nytA/nostruct-align/1nytA.t2k-thin90.a2m.gz
# 1nytA.t2k-thin90.a2m with 229 sequences, total weight= 154.036 avg weight= 0.672644 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30135 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nytA/info/1nytA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nytA/nostruct-align/1nytA.t2k-thin90.a2m.gz, have 43889 columns in 193 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1evlA/nostruct-align/1evlA.t2k-thin90.a2m.gz
# 1evlA.t2k-thin90.a2m with 238 sequences, total weight= 238 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23552 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1evlA/info/1evlA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1evlA/nostruct-align/1evlA.t2k-thin90.a2m.gz, have 44290 columns in 194 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hyoA/nostruct-align/1hyoA.t2k-thin90.a2m.gz
# 1hyoA.t2k-thin90.a2m with 177 sequences, total weight= 60.9016 avg weight= 0.344077 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hyoA/info/1hyoA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hyoA/nostruct-align/1hyoA.t2k-thin90.a2m.gz, have 44706 columns in 195 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mh1/nostruct-align/1mh1.t2k-thin90.a2m.gz
# 1mh1.t2k-thin90.a2m with 633 sequences, total weight= 597.469 avg weight= 0.943869 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30101 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mh1/info/1mh1.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mh1/nostruct-align/1mh1.t2k-thin90.a2m.gz, have 44889 columns in 196 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qw9A/nostruct-align/1qw9A.t2k-thin90.a2m.gz
# 1qw9A.t2k-thin90.a2m with 52 sequences, total weight= 27.6226 avg weight= 0.531204 35 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qw9A/info/1qw9A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qw9A/nostruct-align/1qw9A.t2k-thin90.a2m.gz, have 45386 columns in 197 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gtkA/nostruct-align/1gtkA.t2k-thin90.a2m.gz
# 1gtkA.t2k-thin90.a2m with 113 sequences, total weight= 17.045 avg weight= 0.150841 41 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gtkA/info/1gtkA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gtkA/nostruct-align/1gtkA.t2k-thin90.a2m.gz, have 45680 columns in 198 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hbnA/nostruct-align/1hbnA.t2k-thin90.a2m.gz
# 1hbnA.t2k-thin90.a2m with 51 sequences, total weight= 5.11719 avg weight= 0.100337 15 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hbnA/info/1hbnA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hbnA/nostruct-align/1hbnA.t2k-thin90.a2m.gz, have 46227 columns in 199 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kqpA/nostruct-align/1kqpA.t2k-thin90.a2m.gz
# 1kqpA.t2k-thin90.a2m with 190 sequences, total weight= 97.4391 avg weight= 0.512837 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30086 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kqpA/info/1kqpA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kqpA/nostruct-align/1kqpA.t2k-thin90.a2m.gz, have 46498 columns in 200 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mb3A/nostruct-align/1mb3A.t2k-thin90.a2m.gz
# 1mb3A.t2k-thin90.a2m with 3805 sequences, total weight= 3116.24 avg weight= 0.818986 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30622 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mb3A/info/1mb3A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mb3A/nostruct-align/1mb3A.t2k-thin90.a2m.gz, have 46615 columns in 201 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vqqA/nostruct-align/1vqqA.t2k-thin90.a2m.gz
# 1vqqA.t2k-thin90.a2m with 590 sequences, total weight= 590 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20614 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vqqA/info/1vqqA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vqqA/nostruct-align/1vqqA.t2k-thin90.a2m.gz, have 47250 columns in 202 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p1jA/nostruct-align/1p1jA.t2k-thin90.a2m.gz
# 1p1jA.t2k-thin90.a2m with 54 sequences, total weight= 27.1622 avg weight= 0.503004 30 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p1jA/info/1p1jA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1p1jA/nostruct-align/1p1jA.t2k-thin90.a2m.gz, have 47775 columns in 203 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/4u/4ubpB/nostruct-align/4ubpB.t2k-thin90.a2m.gz
# 4ubpB.t2k-thin90.a2m with 86 sequences, total weight= 6.82481 avg weight= 0.0793582 30 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/4u/4ubpB/info/4ubpB.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/4u/4ubpB/nostruct-align/4ubpB.t2k-thin90.a2m.gz, have 47897 columns in 204 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vhtA/nostruct-align/1vhtA.t2k-thin90.a2m.gz
# 1vhtA.t2k-thin90.a2m with 200 sequences, total weight= 150.629 avg weight= 0.753143 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vhtA/info/1vhtA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vhtA/nostruct-align/1vhtA.t2k-thin90.a2m.gz, have 48105 columns in 205 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nrzA/nostruct-align/1nrzA.t2k-thin90.a2m.gz
# 1nrzA.t2k-thin90.a2m with 65 sequences, total weight= 20.2959 avg weight= 0.312244 38 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nrzA/info/1nrzA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nrzA/nostruct-align/1nrzA.t2k-thin90.a2m.gz, have 48268 columns in 206 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kfcA/nostruct-align/1kfcA.t2k-thin90.a2m.gz
# 1kfcA.t2k-thin90.a2m with 219 sequences, total weight= 22.1329 avg weight= 0.101063 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kfcA/info/1kfcA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kfcA/nostruct-align/1kfcA.t2k-thin90.a2m.gz, have 48522 columns in 207 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1ve2A/nostruct-align/1ve2A.t2k-thin90.a2m.gz
# 1ve2A.t2k-thin90.a2m with 797 sequences, total weight= 797 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28023 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1ve2A/info/1ve2A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1ve2A/nostruct-align/1ve2A.t2k-thin90.a2m.gz, have 48744 columns in 208 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hw1A/nostruct-align/1hw1A.t2k-thin90.a2m.gz
# 1hw1A.t2k-thin90.a2m with 387 sequences, total weight= 387 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08013 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hw1A/info/1hw1A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hw1A/nostruct-align/1hw1A.t2k-thin90.a2m.gz, have 48970 columns in 209 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k4iA/nostruct-align/1k4iA.t2k-thin90.a2m.gz
# 1k4iA.t2k-thin90.a2m with 145 sequences, total weight= 13.2677 avg weight= 0.0915011 33 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k4iA/info/1k4iA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k4iA/nostruct-align/1k4iA.t2k-thin90.a2m.gz, have 49186 columns in 210 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w0hA/nostruct-align/1w0hA.t2k-thin90.a2m.gz
# 1w0hA.t2k-thin90.a2m with 151 sequences, total weight= 151 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23761 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w0hA/info/1w0hA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1w0hA/nostruct-align/1w0hA.t2k-thin90.a2m.gz, have 49386 columns in 211 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n0qA/nostruct-align/1n0qA.t2k-thin90.a2m.gz
# 1n0qA.t2k-thin90.a2m with 1981 sequences, total weight= 1981 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28487 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n0qA/info/1n0qA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n0qA/nostruct-align/1n0qA.t2k-thin90.a2m.gz, have 49477 columns in 212 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1utg/nostruct-align/1utg.t2k-thin90.a2m.gz
# 1utg.t2k-thin90.a2m with 32 sequences, total weight= 11.2852 avg weight= 0.352662 27 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1utg/info/1utg.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1utg/nostruct-align/1utg.t2k-thin90.a2m.gz, have 49547 columns in 213 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jm1A/nostruct-align/1jm1A.t2k-thin90.a2m.gz
# 1jm1A.t2k-thin90.a2m with 225 sequences, total weight= 127.645 avg weight= 0.56731 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jm1A/info/1jm1A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jm1A/nostruct-align/1jm1A.t2k-thin90.a2m.gz, have 49749 columns in 214 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fna/nostruct-align/1fna.t2k-thin90.a2m.gz
# 1fna.t2k-thin90.a2m with 917 sequences, total weight= 917 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1025 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fna/info/1fna.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fna/nostruct-align/1fna.t2k-thin90.a2m.gz, have 49840 columns in 215 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k7cA/nostruct-align/1k7cA.t2k-thin90.a2m.gz
# 1k7cA.t2k-thin90.a2m with 35 sequences, total weight= 24.526 avg weight= 0.700741 29 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k7cA/info/1k7cA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k7cA/nostruct-align/1k7cA.t2k-thin90.a2m.gz, have 50073 columns in 216 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t8kA/nostruct-align/1t8kA.t2k-thin90.a2m.gz
# 1t8kA.t2k-thin90.a2m with 500 sequences, total weight= 134.058 avg weight= 0.268116 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30287 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t8kA/info/1t8kA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t8kA/nostruct-align/1t8kA.t2k-thin90.a2m.gz, have 50150 columns in 217 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1ml4A/nostruct-align/1ml4A.t2k-thin90.a2m.gz
# 1ml4A.t2k-thin90.a2m with 277 sequences, total weight= 36.685 avg weight= 0.132437 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1ml4A/info/1ml4A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1ml4A/nostruct-align/1ml4A.t2k-thin90.a2m.gz, have 50457 columns in 218 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ucsA/nostruct-align/1ucsA.t2k-thin90.a2m.gz
# 1ucsA.t2k-thin90.a2m with 10 sequences, total weight= 5.03674 avg weight= 0.503674 15 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ucsA/info/1ucsA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1ucsA/nostruct-align/1ucsA.t2k-thin90.a2m.gz, have 50521 columns in 219 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eg2A/nostruct-align/1eg2A.t2k-thin90.a2m.gz
# 1eg2A.t2k-thin90.a2m with 213 sequences, total weight= 213 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21725 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eg2A/info/1eg2A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1eg2A/nostruct-align/1eg2A.t2k-thin90.a2m.gz, have 50791 columns in 220 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1ymkA/nostruct-align/1ymkA.t2k-thin90.a2m.gz
# 1ymkA.t2k-thin90.a2m with 316 sequences, total weight= 316 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20173 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1ymkA/info/1ymkA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1y/1ymkA/nostruct-align/1ymkA.t2k-thin90.a2m.gz, have 50962 columns in 221 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sdiA/nostruct-align/1sdiA.t2k-thin90.a2m.gz
# 1sdiA.t2k-thin90.a2m with 27 sequences, total weight= 9.13589 avg weight= 0.338366 27 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sdiA/info/1sdiA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sdiA/nostruct-align/1sdiA.t2k-thin90.a2m.gz, have 51175 columns in 222 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n40A/nostruct-align/1n40A.t2k-thin90.a2m.gz
# 1n40A.t2k-thin90.a2m with 886 sequences, total weight= 886 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08495 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n40A/info/1n40A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n40A/nostruct-align/1n40A.t2k-thin90.a2m.gz, have 51569 columns in 223 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e58A/nostruct-align/1e58A.t2k-thin90.a2m.gz
# 1e58A.t2k-thin90.a2m with 185 sequences, total weight= 185 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19596 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e58A/info/1e58A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e58A/nostruct-align/1e58A.t2k-thin90.a2m.gz, have 51816 columns in 224 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kq3A/nostruct-align/1kq3A.t2k-thin90.a2m.gz
# 1kq3A.t2k-thin90.a2m with 219 sequences, total weight= 219 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17876 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kq3A/info/1kq3A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kq3A/nostruct-align/1kq3A.t2k-thin90.a2m.gz, have 52180 columns in 225 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nvmA/nostruct-align/1nvmA.t2k-thin90.a2m.gz
# 1nvmA.t2k-thin90.a2m with 354 sequences, total weight= 187.28 avg weight= 0.529038 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30264 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nvmA/info/1nvmA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nvmA/nostruct-align/1nvmA.t2k-thin90.a2m.gz, have 52520 columns in 226 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kugA/nostruct-align/1kugA.t2k-thin90.a2m.gz
# 1kugA.t2k-thin90.a2m with 192 sequences, total weight= 177.354 avg weight= 0.923718 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30044 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kugA/info/1kugA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kugA/nostruct-align/1kugA.t2k-thin90.a2m.gz, have 52721 columns in 227 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wubA/nostruct-align/1wubA.t2k-thin90.a2m.gz
# 1wubA.t2k-thin90.a2m with 165 sequences, total weight= 74.5817 avg weight= 0.45201 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30048 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wubA/info/1wubA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1wubA/nostruct-align/1wubA.t2k-thin90.a2m.gz, have 52897 columns in 228 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1umgA/nostruct-align/1umgA.t2k-thin90.a2m.gz
# 1umgA.t2k-thin90.a2m with 21 sequences, total weight= 3.74432 avg weight= 0.178301 18 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1umgA/info/1umgA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1umgA/nostruct-align/1umgA.t2k-thin90.a2m.gz, have 53256 columns in 229 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gkpA/nostruct-align/1gkpA.t2k-thin90.a2m.gz
# 1gkpA.t2k-thin90.a2m with 390 sequences, total weight= 390 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.959872 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gkpA/info/1gkpA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gkpA/nostruct-align/1gkpA.t2k-thin90.a2m.gz, have 53714 columns in 230 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lwbA/nostruct-align/1lwbA.t2k-thin90.a2m.gz
# 1lwbA.t2k-thin90.a2m with 8 sequences, total weight= 6.67078 avg weight= 0.833848 14 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lwbA/info/1lwbA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lwbA/nostruct-align/1lwbA.t2k-thin90.a2m.gz, have 53836 columns in 231 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w6sA/nostruct-align/1w6sA.t2k-thin90.a2m.gz
# 1w6sA.t2k-thin90.a2m with 254 sequences, total weight= 254 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11025 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w6sA/info/1w6sA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1w6sA/nostruct-align/1w6sA.t2k-thin90.a2m.gz, have 54431 columns in 232 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gnlA/nostruct-align/1gnlA.t2k-thin90.a2m.gz
# 1gnlA.t2k-thin90.a2m with 52 sequences, total weight= 18.5719 avg weight= 0.357153 33 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gnlA/info/1gnlA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gnlA/nostruct-align/1gnlA.t2k-thin90.a2m.gz, have 54974 columns in 233 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nls/nostruct-align/1nls.t2k-thin90.a2m.gz
# 1nls.t2k-thin90.a2m with 277 sequences, total weight= 56.6791 avg weight= 0.204618 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nls/info/1nls.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nls/nostruct-align/1nls.t2k-thin90.a2m.gz, have 55211 columns in 234 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wr8A/nostruct-align/1wr8A.t2k-thin90.a2m.gz
# 1wr8A.t2k-thin90.a2m with 870 sequences, total weight= 870 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05494 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wr8A/info/1wr8A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1wr8A/nostruct-align/1wr8A.t2k-thin90.a2m.gz, have 55441 columns in 235 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mtzA/nostruct-align/1mtzA.t2k-thin90.a2m.gz
# 1mtzA.t2k-thin90.a2m with 1070 sequences, total weight= 1070 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.787676 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mtzA/info/1mtzA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mtzA/nostruct-align/1mtzA.t2k-thin90.a2m.gz, have 55731 columns in 236 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gu2A/nostruct-align/1gu2A.t2k-thin90.a2m.gz
# 1gu2A.t2k-thin90.a2m with 6 sequences, total weight= 5.40735 avg weight= 0.901225 13 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gu2A/info/1gu2A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gu2A/nostruct-align/1gu2A.t2k-thin90.a2m.gz, have 55855 columns in 237 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2m/2mhr/nostruct-align/2mhr.t2k-thin90.a2m.gz
# 2mhr.t2k-thin90.a2m with 89 sequences, total weight= 68.1084 avg weight= 0.765262 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2m/2mhr/info/2mhr.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/2m/2mhr/nostruct-align/2mhr.t2k-thin90.a2m.gz, have 55973 columns in 238 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1yn9A/nostruct-align/1yn9A.t2k-thin90.a2m.gz
# 1yn9A.t2k-thin90.a2m with 386 sequences, total weight= 386 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13843 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1yn9A/info/1yn9A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1y/1yn9A/nostruct-align/1yn9A.t2k-thin90.a2m.gz, have 56141 columns in 239 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wl4A/nostruct-align/1wl4A.t2k-thin90.a2m.gz
# 1wl4A.t2k-thin90.a2m with 1414 sequences, total weight= 395.794 avg weight= 0.279911 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31959 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wl4A/info/1wl4A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1wl4A/nostruct-align/1wl4A.t2k-thin90.a2m.gz, have 56535 columns in 240 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uxaA/nostruct-align/1uxaA.t2k-thin90.a2m.gz
# 1uxaA.t2k-thin90.a2m with 33 sequences, total weight= 14.7892 avg weight= 0.448156 30 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uxaA/info/1uxaA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uxaA/nostruct-align/1uxaA.t2k-thin90.a2m.gz, have 56720 columns in 241 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xrkA/nostruct-align/1xrkA.t2k-thin90.a2m.gz
# 1xrkA.t2k-thin90.a2m with 116 sequences, total weight= 116 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09064 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xrkA/info/1xrkA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1xrkA/nostruct-align/1xrkA.t2k-thin90.a2m.gz, have 56840 columns in 242 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dozA/nostruct-align/1dozA.t2k-thin90.a2m.gz
# 1dozA.t2k-thin90.a2m with 125 sequences, total weight= 45.061 avg weight= 0.360488 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dozA/info/1dozA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dozA/nostruct-align/1dozA.t2k-thin90.a2m.gz, have 57149 columns in 243 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lfpA/nostruct-align/1lfpA.t2k-thin90.a2m.gz
# 1lfpA.t2k-thin90.a2m with 127 sequences, total weight= 17.4619 avg weight= 0.137495 35 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lfpA/info/1lfpA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lfpA/nostruct-align/1lfpA.t2k-thin90.a2m.gz, have 57392 columns in 244 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xttA/nostruct-align/1xttA.t2k-thin90.a2m.gz
# 1xttA.t2k-thin90.a2m with 254 sequences, total weight= 57.0968 avg weight= 0.22479 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xttA/info/1xttA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1xttA/nostruct-align/1xttA.t2k-thin90.a2m.gz, have 57607 columns in 245 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1yd0A/nostruct-align/1yd0A.t2k-thin90.a2m.gz
# 1yd0A.t2k-thin90.a2m with 222 sequences, total weight= 22.1341 avg weight= 0.099703 45 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1yd0A/info/1yd0A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1y/1yd0A/nostruct-align/1yd0A.t2k-thin90.a2m.gz, have 57696 columns in 246 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1syyA/nostruct-align/1syyA.t2k-thin90.a2m.gz
# 1syyA.t2k-thin90.a2m with 231 sequences, total weight= 143.607 avg weight= 0.621674 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30113 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1syyA/info/1syyA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1s/1syyA/nostruct-align/1syyA.t2k-thin90.a2m.gz, have 58013 columns in 247 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hnjA/nostruct-align/1hnjA.t2k-thin90.a2m.gz
# 1hnjA.t2k-thin90.a2m with 271 sequences, total weight= 271 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16092 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hnjA/info/1hnjA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hnjA/nostruct-align/1hnjA.t2k-thin90.a2m.gz, have 58330 columns in 248 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r7jA/nostruct-align/1r7jA.t2k-thin90.a2m.gz
# 1r7jA.t2k-thin90.a2m with 34 sequences, total weight= 28.995 avg weight= 0.852793 32 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r7jA/info/1r7jA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r7jA/nostruct-align/1r7jA.t2k-thin90.a2m.gz, have 58420 columns in 249 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jfbA/nostruct-align/1jfbA.t2k-thin90.a2m.gz
# 1jfbA.t2k-thin90.a2m with 904 sequences, total weight= 904 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08832 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jfbA/info/1jfbA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jfbA/nostruct-align/1jfbA.t2k-thin90.a2m.gz, have 58819 columns in 250 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o7iA/nostruct-align/1o7iA.t2k-thin90.a2m.gz
# 1o7iA.t2k-thin90.a2m with 82 sequences, total weight= 82 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27771 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o7iA/info/1o7iA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o7iA/nostruct-align/1o7iA.t2k-thin90.a2m.gz, have 58934 columns in 251 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j1yA/nostruct-align/1j1yA.t2k-thin90.a2m.gz
# 1j1yA.t2k-thin90.a2m with 266 sequences, total weight= 266 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23366 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j1yA/info/1j1yA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j1yA/nostruct-align/1j1yA.t2k-thin90.a2m.gz, have 59050 columns in 252 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oz2A/nostruct-align/1oz2A.t2k-thin90.a2m.gz
# 1oz2A.t2k-thin90.a2m with 30 sequences, total weight= 13.684 avg weight= 0.456134 27 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oz2A/info/1oz2A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oz2A/nostruct-align/1oz2A.t2k-thin90.a2m.gz, have 59374 columns in 253 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f8eA/nostruct-align/1f8eA.t2k-thin90.a2m.gz
# 1f8eA.t2k-thin90.a2m with 17 sequences, total weight= 4.62636 avg weight= 0.272139 19 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f8eA/info/1f8eA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f8eA/nostruct-align/1f8eA.t2k-thin90.a2m.gz, have 59762 columns in 254 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xpcA/nostruct-align/1xpcA.t2k-thin90.a2m.gz
# 1xpcA.t2k-thin90.a2m with 507 sequences, total weight= 507 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19071 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xpcA/info/1xpcA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1xpcA/nostruct-align/1xpcA.t2k-thin90.a2m.gz, have 60007 columns in 255 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vr8A/nostruct-align/1vr8A.t2k-thin90.a2m.gz
# 1vr8A.t2k-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.595407 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vr8A/info/1vr8A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vr8A/nostruct-align/1vr8A.t2k-thin90.a2m.gz, have 60142 columns in 256 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kzqA/nostruct-align/1kzqA.t2k-thin90.a2m.gz
# 1kzqA.t2k-thin90.a2m with 19 sequences, total weight= 15.4634 avg weight= 0.813865 25 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kzqA/info/1kzqA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kzqA/nostruct-align/1kzqA.t2k-thin90.a2m.gz, have 60395 columns in 257 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t9hA/nostruct-align/1t9hA.t2k-thin90.a2m.gz
# 1t9hA.t2k-thin90.a2m with 223 sequences, total weight= 96.2914 avg weight= 0.4318 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30089 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t9hA/info/1t9hA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t9hA/nostruct-align/1t9hA.t2k-thin90.a2m.gz, have 60682 columns in 258 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1yxyA/nostruct-align/1yxyA.t2k-thin90.a2m.gz
# 1yxyA.t2k-thin90.a2m with 337 sequences, total weight= 337 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18552 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1yxyA/info/1yxyA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1y/1yxyA/nostruct-align/1yxyA.t2k-thin90.a2m.gz, have 60912 columns in 259 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m1nB/nostruct-align/1m1nB.t2k-thin90.a2m.gz
# 1m1nB.t2k-thin90.a2m with 246 sequences, total weight= 246 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2831 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m1nB/info/1m1nB.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m1nB/nostruct-align/1m1nB.t2k-thin90.a2m.gz, have 61434 columns in 260 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qw2A/nostruct-align/1qw2A.t2k-thin90.a2m.gz
# 1qw2A.t2k-thin90.a2m with 12 sequences, total weight= 6.36717 avg weight= 0.530597 20 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qw2A/info/1qw2A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qw2A/nostruct-align/1qw2A.t2k-thin90.a2m.gz, have 61536 columns in 261 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ufoA/nostruct-align/1ufoA.t2k-thin90.a2m.gz
# 1ufoA.t2k-thin90.a2m with 376 sequences, total weight= 376 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.873807 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ufoA/info/1ufoA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1ufoA/nostruct-align/1ufoA.t2k-thin90.a2m.gz, have 61774 columns in 262 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vkfA/nostruct-align/1vkfA.t2k-thin90.a2m.gz
# 1vkfA.t2k-thin90.a2m with 22 sequences, total weight= 8.8752 avg weight= 0.403418 27 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vkfA/info/1vkfA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vkfA/nostruct-align/1vkfA.t2k-thin90.a2m.gz, have 61946 columns in 263 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nszA/nostruct-align/1nszA.t2k-thin90.a2m.gz
# 1nszA.t2k-thin90.a2m with 97 sequences, total weight= 79.9224 avg weight= 0.823942 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nszA/info/1nszA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nszA/nostruct-align/1nszA.t2k-thin90.a2m.gz, have 62286 columns in 264 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dd9A/nostruct-align/1dd9A.t2k-thin90.a2m.gz
# 1dd9A.t2k-thin90.a2m with 160 sequences, total weight= 123.828 avg weight= 0.773922 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30047 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dd9A/info/1dd9A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dd9A/nostruct-align/1dd9A.t2k-thin90.a2m.gz, have 62596 columns in 265 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iuaA/nostruct-align/1iuaA.t2k-thin90.a2m.gz
# 1iuaA.t2k-thin90.a2m with 18 sequences, total weight= 7.7566 avg weight= 0.430922 20 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iuaA/info/1iuaA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1iuaA/nostruct-align/1iuaA.t2k-thin90.a2m.gz, have 62679 columns in 266 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lqtA/nostruct-align/1lqtA.t2k-thin90.a2m.gz
# 1lqtA.t2k-thin90.a2m with 302 sequences, total weight= 302 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15872 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lqtA/info/1lqtA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lqtA/nostruct-align/1lqtA.t2k-thin90.a2m.gz, have 63131 columns in 267 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mml/nostruct-align/1mml.t2k-thin90.a2m.gz
# 1mml.t2k-thin90.a2m with 509 sequences, total weight= 64.5292 avg weight= 0.126777 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3004 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mml/info/1mml.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mml/nostruct-align/1mml.t2k-thin90.a2m.gz, have 63382 columns in 268 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1y93A/nostruct-align/1y93A.t2k-thin90.a2m.gz
# 1y93A.t2k-thin90.a2m with 310 sequences, total weight= 146.966 avg weight= 0.474085 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3024 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1y93A/info/1y93A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1y/1y93A/nostruct-align/1y93A.t2k-thin90.a2m.gz, have 63540 columns in 269 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i2kA/nostruct-align/1i2kA.t2k-thin90.a2m.gz
# 1i2kA.t2k-thin90.a2m with 218 sequences, total weight= 218 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29736 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i2kA/info/1i2kA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i2kA/nostruct-align/1i2kA.t2k-thin90.a2m.gz, have 63809 columns in 270 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1x6zA/nostruct-align/1x6zA.t2k-thin90.a2m.gz
# 1x6zA.t2k-thin90.a2m with 73 sequences, total weight= 40.9573 avg weight= 0.561058 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1x6zA/info/1x6zA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1x6zA/nostruct-align/1x6zA.t2k-thin90.a2m.gz, have 63928 columns in 271 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wwzA/nostruct-align/1wwzA.t2k-thin90.a2m.gz
# 1wwzA.t2k-thin90.a2m with 1405 sequences, total weight= 1405 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.902357 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wwzA/info/1wwzA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1wwzA/nostruct-align/1wwzA.t2k-thin90.a2m.gz, have 64085 columns in 272 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1amf/nostruct-align/1amf.t2k-thin90.a2m.gz
# 1amf.t2k-thin90.a2m with 166 sequences, total weight= 166 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14131 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1amf/info/1amf.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1a/1amf/nostruct-align/1amf.t2k-thin90.a2m.gz, have 64316 columns in 273 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nogA/nostruct-align/1nogA.t2k-thin90.a2m.gz
# 1nogA.t2k-thin90.a2m with 68 sequences, total weight= 14.9283 avg weight= 0.219534 35 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nogA/info/1nogA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nogA/nostruct-align/1nogA.t2k-thin90.a2m.gz, have 64465 columns in 274 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kid/nostruct-align/1kid.t2k-thin90.a2m.gz
# 1kid.t2k-thin90.a2m with 197 sequences, total weight= 12.1824 avg weight= 0.0618397 34 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kid/info/1kid.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kid/nostruct-align/1kid.t2k-thin90.a2m.gz, have 64658 columns in 275 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1ryqA/nostruct-align/1ryqA.t2k-thin90.a2m.gz
# 1ryqA.t2k-thin90.a2m with 19 sequences, total weight= 6.55252 avg weight= 0.34487 23 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1ryqA/info/1ryqA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1ryqA/nostruct-align/1ryqA.t2k-thin90.a2m.gz, have 64722 columns in 276 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n4wA/nostruct-align/1n4wA.t2k-thin90.a2m.gz
# 1n4wA.t2k-thin90.a2m with 317 sequences, total weight= 317 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08592 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n4wA/info/1n4wA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n4wA/nostruct-align/1n4wA.t2k-thin90.a2m.gz, have 65220 columns in 277 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e7lA/nostruct-align/1e7lA.t2k-thin90.a2m.gz
# 1e7lA.t2k-thin90.a2m with 25 sequences, total weight= 18.6075 avg weight= 0.7443 21 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e7lA/info/1e7lA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e7lA/nostruct-align/1e7lA.t2k-thin90.a2m.gz, have 65377 columns in 278 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jyeA/nostruct-align/1jyeA.t2k-thin90.a2m.gz
# 1jyeA.t2k-thin90.a2m with 420 sequences, total weight= 420 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08647 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jyeA/info/1jyeA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jyeA/nostruct-align/1jyeA.t2k-thin90.a2m.gz, have 65648 columns in 279 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g66A/nostruct-align/1g66A.t2k-thin90.a2m.gz
# 1g66A.t2k-thin90.a2m with 35 sequences, total weight= 27.2235 avg weight= 0.777813 30 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g66A/info/1g66A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1g66A/nostruct-align/1g66A.t2k-thin90.a2m.gz, have 65855 columns in 280 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/19/19hcA/nostruct-align/19hcA.t2k-thin90.a2m.gz
# 19hcA.t2k-thin90.a2m with 146 sequences, total weight= 146 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.813899 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/19/19hcA/info/19hcA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/19/19hcA/nostruct-align/19hcA.t2k-thin90.a2m.gz, have 66147 columns in 281 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bebA/nostruct-align/1bebA.t2k-thin90.a2m.gz
# 1bebA.t2k-thin90.a2m with 119 sequences, total weight= 119 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27145 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bebA/info/1bebA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1b/1bebA/nostruct-align/1bebA.t2k-thin90.a2m.gz, have 66303 columns in 282 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ii5A/nostruct-align/1ii5A.t2k-thin90.a2m.gz
# 1ii5A.t2k-thin90.a2m with 219 sequences, total weight= 219 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22134 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ii5A/info/1ii5A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1ii5A/nostruct-align/1ii5A.t2k-thin90.a2m.gz, have 66524 columns in 283 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wmzA/nostruct-align/1wmzA.t2k-thin90.a2m.gz
# 1wmzA.t2k-thin90.a2m with 1016 sequences, total weight= 1016 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08287 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wmzA/info/1wmzA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1wmzA/nostruct-align/1wmzA.t2k-thin90.a2m.gz, have 66664 columns in 284 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oafA/nostruct-align/1oafA.t2k-thin90.a2m.gz
# 1oafA.t2k-thin90.a2m with 441 sequences, total weight= 59.8782 avg weight= 0.135778 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30076 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oafA/info/1oafA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oafA/nostruct-align/1oafA.t2k-thin90.a2m.gz, have 66914 columns in 285 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i0rA/nostruct-align/1i0rA.t2k-thin90.a2m.gz
# 1i0rA.t2k-thin90.a2m with 186 sequences, total weight= 87.39 avg weight= 0.469839 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30033 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i0rA/info/1i0rA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i0rA/nostruct-align/1i0rA.t2k-thin90.a2m.gz, have 67075 columns in 286 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1yocA/nostruct-align/1yocA.t2k-thin90.a2m.gz
# 1yocA.t2k-thin90.a2m with 82 sequences, total weight= 82 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22989 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1yocA/info/1yocA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1y/1yocA/nostruct-align/1yocA.t2k-thin90.a2m.gz, have 67220 columns in 287 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nbuA/nostruct-align/1nbuA.t2k-thin90.a2m.gz
# 1nbuA.t2k-thin90.a2m with 108 sequences, total weight= 28.2446 avg weight= 0.261524 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nbuA/info/1nbuA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nbuA/nostruct-align/1nbuA.t2k-thin90.a2m.gz, have 67338 columns in 288 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d02A/nostruct-align/1d02A.t2k-thin90.a2m.gz
# 1d02A.t2k-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.615068 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d02A/info/1d02A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1d/1d02A/nostruct-align/1d02A.t2k-thin90.a2m.gz, have 67535 columns in 289 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vl1A/nostruct-align/1vl1A.t2k-thin90.a2m.gz
# 1vl1A.t2k-thin90.a2m with 274 sequences, total weight= 88.8054 avg weight= 0.324107 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30244 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vl1A/info/1vl1A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vl1A/nostruct-align/1vl1A.t2k-thin90.a2m.gz, have 67753 columns in 290 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cqmA/nostruct-align/1cqmA.t2k-thin90.a2m.gz
# 1cqmA.t2k-thin90.a2m with 109 sequences, total weight= 37.0637 avg weight= 0.340034 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cqmA/info/1cqmA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cqmA/nostruct-align/1cqmA.t2k-thin90.a2m.gz, have 67851 columns in 291 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1io7A/nostruct-align/1io7A.t2k-thin90.a2m.gz
# 1io7A.t2k-thin90.a2m with 1003 sequences, total weight= 1003 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07008 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1io7A/info/1io7A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1io7A/nostruct-align/1io7A.t2k-thin90.a2m.gz, have 68217 columns in 292 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uwwA/nostruct-align/1uwwA.t2k-thin90.a2m.gz
# 1uwwA.t2k-thin90.a2m with 7 sequences, total weight= 2.93433 avg weight= 0.41919 13 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uwwA/info/1uwwA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uwwA/nostruct-align/1uwwA.t2k-thin90.a2m.gz, have 68401 columns in 293 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iktA/nostruct-align/1iktA.t2k-thin90.a2m.gz
# 1iktA.t2k-thin90.a2m with 72 sequences, total weight= 72 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25826 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iktA/info/1iktA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1iktA/nostruct-align/1iktA.t2k-thin90.a2m.gz, have 68516 columns in 294 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1yqhA/nostruct-align/1yqhA.t2k-thin90.a2m.gz
# 1yqhA.t2k-thin90.a2m with 75 sequences, total weight= 27.7907 avg weight= 0.370543 38 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1yqhA/info/1yqhA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1y/1yqhA/nostruct-align/1yqhA.t2k-thin90.a2m.gz, have 68620 columns in 295 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j8rA/nostruct-align/1j8rA.t2k-thin90.a2m.gz
# 1j8rA.t2k-thin90.a2m with 5 sequences, total weight= 3.45363 avg weight= 0.690725 12 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j8rA/info/1j8rA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j8rA/nostruct-align/1j8rA.t2k-thin90.a2m.gz, have 68816 columns in 296 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gweA/nostruct-align/1gweA.t2k-thin90.a2m.gz
# 1gweA.t2k-thin90.a2m with 153 sequences, total weight= 21.221 avg weight= 0.138699 37 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gweA/info/1gweA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gweA/nostruct-align/1gweA.t2k-thin90.a2m.gz, have 69314 columns in 297 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ispA/nostruct-align/1ispA.t2k-thin90.a2m.gz
# 1ispA.t2k-thin90.a2m with 267 sequences, total weight= 267 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.893598 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ispA/info/1ispA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1ispA/nostruct-align/1ispA.t2k-thin90.a2m.gz, have 69493 columns in 298 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nrvA/nostruct-align/1nrvA.t2k-thin90.a2m.gz
# 1nrvA.t2k-thin90.a2m with 272 sequences, total weight= 136.604 avg weight= 0.502219 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30243 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nrvA/info/1nrvA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nrvA/nostruct-align/1nrvA.t2k-thin90.a2m.gz, have 69593 columns in 299 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cs1A/nostruct-align/1cs1A.t2k-thin90.a2m.gz
# 1cs1A.t2k-thin90.a2m with 399 sequences, total weight= 399 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12719 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cs1A/info/1cs1A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cs1A/nostruct-align/1cs1A.t2k-thin90.a2m.gz, have 69977 columns in 300 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bdmA/nostruct-align/1bdmA.t2k-thin90.a2m.gz
# 1bdmA.t2k-thin90.a2m with 196 sequences, total weight= 38.9941 avg weight= 0.198949 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bdmA/info/1bdmA.stride-mixed.CB-burial-12-7
WARNING: skipping a, since it is lower case.
# After reading /projects/compbio/experiments/models.97/pdb/1b/1bdmA/nostruct-align/1bdmA.t2k-thin90.a2m.gz, have 70294 columns in 301 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lc5A/nostruct-align/1lc5A.t2k-thin90.a2m.gz
# 1lc5A.t2k-thin90.a2m with 610 sequences, total weight= 610 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09345 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lc5A/info/1lc5A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lc5A/nostruct-align/1lc5A.t2k-thin90.a2m.gz, have 70649 columns in 302 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w2fA/nostruct-align/1w2fA.t2k-thin90.a2m.gz
# 1w2fA.t2k-thin90.a2m with 84 sequences, total weight= 25.8289 avg weight= 0.307486 38 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w2fA/info/1w2fA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1w2fA/nostruct-align/1w2fA.t2k-thin90.a2m.gz, have 70925 columns in 303 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1je0A/nostruct-align/1je0A.t2k-thin90.a2m.gz
# 1je0A.t2k-thin90.a2m with 162 sequences, total weight= 99.0761 avg weight= 0.611581 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30076 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1je0A/info/1je0A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1je0A/nostruct-align/1je0A.t2k-thin90.a2m.gz, have 71151 columns in 304 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iab/nostruct-align/1iab.t2k-thin90.a2m.gz
# 1iab.t2k-thin90.a2m with 119 sequences, total weight= 47.7869 avg weight= 0.401571 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iab/info/1iab.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1iab/nostruct-align/1iab.t2k-thin90.a2m.gz, have 71351 columns in 305 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gnyA/nostruct-align/1gnyA.t2k-thin90.a2m.gz
# 1gnyA.t2k-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13963 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gnyA/info/1gnyA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gnyA/nostruct-align/1gnyA.t2k-thin90.a2m.gz, have 71504 columns in 306 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1y9iA/nostruct-align/1y9iA.t2k-thin90.a2m.gz
# 1y9iA.t2k-thin90.a2m with 42 sequences, total weight= 16.6136 avg weight= 0.395562 31 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1y9iA/info/1y9iA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1y/1y9iA/nostruct-align/1y9iA.t2k-thin90.a2m.gz, have 71663 columns in 307 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1na3A/nostruct-align/1na3A.t2k-thin90.a2m.gz
# 1na3A.t2k-thin90.a2m with 2404 sequences, total weight= 2404 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02581 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1na3A/info/1na3A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1na3A/nostruct-align/1na3A.t2k-thin90.a2m.gz, have 71749 columns in 308 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m6sA/nostruct-align/1m6sA.t2k-thin90.a2m.gz
# 1m6sA.t2k-thin90.a2m with 962 sequences, total weight= 962 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.925492 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m6sA/info/1m6sA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m6sA/nostruct-align/1m6sA.t2k-thin90.a2m.gz, have 72092 columns in 309 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lb6A/nostruct-align/1lb6A.t2k-thin90.a2m.gz
# 1lb6A.t2k-thin90.a2m with 45 sequences, total weight= 30.2175 avg weight= 0.671501 36 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lb6A/info/1lb6A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lb6A/nostruct-align/1lb6A.t2k-thin90.a2m.gz, have 72247 columns in 310 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1ga6A/nostruct-align/1ga6A.t2k-thin90.a2m.gz
# 1ga6A.t2k-thin90.a2m with 153 sequences, total weight= 153 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12256 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1ga6A/info/1ga6A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1ga6A/nostruct-align/1ga6A.t2k-thin90.a2m.gz, have 72616 columns in 311 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1agjA/nostruct-align/1agjA.t2k-thin90.a2m.gz
# 1agjA.t2k-thin90.a2m with 353 sequences, total weight= 353 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14141 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1agjA/info/1agjA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1a/1agjA/nostruct-align/1agjA.t2k-thin90.a2m.gz, have 72858 columns in 312 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g4yB/nostruct-align/1g4yB.t2k-thin90.a2m.gz
# 1g4yB.t2k-thin90.a2m with 12 sequences, total weight= 5.43649 avg weight= 0.453041 16 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g4yB/info/1g4yB.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1g4yB/nostruct-align/1g4yB.t2k-thin90.a2m.gz, have 72939 columns in 313 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tzpA/nostruct-align/1tzpA.t2k-thin90.a2m.gz
# 1tzpA.t2k-thin90.a2m with 24 sequences, total weight= 6.22104 avg weight= 0.25921 27 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tzpA/info/1tzpA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tzpA/nostruct-align/1tzpA.t2k-thin90.a2m.gz, have 73179 columns in 314 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vie/nostruct-align/1vie.t2k-thin90.a2m.gz
# 1vie.t2k-thin90.a2m with 3 sequences, total weight= 1.86924 avg weight= 0.62308 8 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vie/info/1vie.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vie/nostruct-align/1vie.t2k-thin90.a2m.gz, have 73239 columns in 315 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dk0A/nostruct-align/1dk0A.t2k-thin90.a2m.gz
# 1dk0A.t2k-thin90.a2m with 5 sequences, total weight= 4.9644 avg weight= 0.99288 9 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dk0A/info/1dk0A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dk0A/nostruct-align/1dk0A.t2k-thin90.a2m.gz, have 73412 columns in 316 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l8rA/nostruct-align/1l8rA.t2k-thin90.a2m.gz
# 1l8rA.t2k-thin90.a2m with 15 sequences, total weight= 6.17977 avg weight= 0.411985 19 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l8rA/info/1l8rA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1l/1l8rA/nostruct-align/1l8rA.t2k-thin90.a2m.gz, have 73513 columns in 317 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h7cA/nostruct-align/1h7cA.t2k-thin90.a2m.gz
# 1h7cA.t2k-thin90.a2m with 20 sequences, total weight= 15.4507 avg weight= 0.772533 22 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h7cA/info/1h7cA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h7cA/nostruct-align/1h7cA.t2k-thin90.a2m.gz, have 73616 columns in 318 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kveB/nostruct-align/1kveB.t2k-thin90.a2m.gz
# 1kveB.t2k-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.649556 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kveB/info/1kveB.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kveB/nostruct-align/1kveB.t2k-thin90.a2m.gz, have 73693 columns in 319 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1elwA/nostruct-align/1elwA.t2k-thin90.a2m.gz
# 1elwA.t2k-thin90.a2m with 704 sequences, total weight= 704 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07441 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1elwA/info/1elwA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1elwA/nostruct-align/1elwA.t2k-thin90.a2m.gz, have 73810 columns in 320 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1aho/nostruct-align/1aho.t2k-thin90.a2m.gz
# 1aho.t2k-thin90.a2m with 97 sequences, total weight= 11.1316 avg weight= 0.114759 33 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1aho/info/1aho.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1a/1aho/nostruct-align/1aho.t2k-thin90.a2m.gz, have 73874 columns in 321 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tvxA/nostruct-align/1tvxA.t2k-thin90.a2m.gz
# 1tvxA.t2k-thin90.a2m with 153 sequences, total weight= 45.1277 avg weight= 0.294952 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tvxA/info/1tvxA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tvxA/nostruct-align/1tvxA.t2k-thin90.a2m.gz, have 73938 columns in 322 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rk6A/nostruct-align/1rk6A.t2k-thin90.a2m.gz
# 1rk6A.t2k-thin90.a2m with 1235 sequences, total weight= 1235 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.899771 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rk6A/info/1rk6A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rk6A/nostruct-align/1rk6A.t2k-thin90.a2m.gz, have 74412 columns in 323 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w0pA/nostruct-align/1w0pA.t2k-thin90.a2m.gz
# 1w0pA.t2k-thin90.a2m with 66 sequences, total weight= 66 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22841 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w0pA/info/1w0pA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1w0pA/nostruct-align/1w0pA.t2k-thin90.a2m.gz, have 75165 columns in 324 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o9iA/nostruct-align/1o9iA.t2k-thin90.a2m.gz
# 1o9iA.t2k-thin90.a2m with 38 sequences, total weight= 16.4533 avg weight= 0.432982 29 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o9iA/info/1o9iA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o9iA/nostruct-align/1o9iA.t2k-thin90.a2m.gz, have 75431 columns in 325 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jboA/nostruct-align/1jboA.t2k-thin90.a2m.gz
# 1jboA.t2k-thin90.a2m with 192 sequences, total weight= 20.4892 avg weight= 0.106715 38 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jboA/info/1jboA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jboA/nostruct-align/1jboA.t2k-thin90.a2m.gz, have 75593 columns in 326 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jz8A/nostruct-align/1jz8A.t2k-thin90.a2m.gz
# 1jz8A.t2k-thin90.a2m with 193 sequences, total weight= 193 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15076 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jz8A/info/1jz8A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jz8A/nostruct-align/1jz8A.t2k-thin90.a2m.gz, have 76604 columns in 327 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lkkA/nostruct-align/1lkkA.t2k-thin90.a2m.gz
# 1lkkA.t2k-thin90.a2m with 221 sequences, total weight= 106.645 avg weight= 0.482558 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30164 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lkkA/info/1lkkA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lkkA/nostruct-align/1lkkA.t2k-thin90.a2m.gz, have 76709 columns in 328 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j83A/nostruct-align/1j83A.t2k-thin90.a2m.gz
# 1j83A.t2k-thin90.a2m with 7 sequences, total weight= 2.97216 avg weight= 0.424594 12 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j83A/info/1j83A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j83A/nostruct-align/1j83A.t2k-thin90.a2m.gz, have 76889 columns in 329 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n7oA/nostruct-align/1n7oA.t2k-thin90.a2m.gz
# 1n7oA.t2k-thin90.a2m with 27 sequences, total weight= 21.1421 avg weight= 0.783042 24 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n7oA/info/1n7oA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n7oA/nostruct-align/1n7oA.t2k-thin90.a2m.gz, have 77610 columns in 330 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kqfA/nostruct-align/1kqfA.t2k-thin90.a2m.gz
# 1kqfA.t2k-thin90.a2m with 235 sequences, total weight= 235 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12284 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kqfA/info/1kqfA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kqfA/nostruct-align/1kqfA.t2k-thin90.a2m.gz, have 78592 columns in 331 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mtyB/nostruct-align/1mtyB.t2k-thin90.a2m.gz
# 1mtyB.t2k-thin90.a2m with 22 sequences, total weight= 18.2255 avg weight= 0.82843 20 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mtyB/info/1mtyB.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mtyB/nostruct-align/1mtyB.t2k-thin90.a2m.gz, have 78976 columns in 332 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jtgB/nostruct-align/1jtgB.t2k-thin90.a2m.gz
# 1jtgB.t2k-thin90.a2m with 3 sequences, total weight= 3 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15327 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jtgB/info/1jtgB.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jtgB/nostruct-align/1jtgB.t2k-thin90.a2m.gz, have 79141 columns in 333 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q4uA/nostruct-align/1q4uA.t2k-thin90.a2m.gz
# 1q4uA.t2k-thin90.a2m with 142 sequences, total weight= 142 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.265 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q4uA/info/1q4uA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q4uA/nostruct-align/1q4uA.t2k-thin90.a2m.gz, have 79281 columns in 334 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ujpA/nostruct-align/1ujpA.t2k-thin90.a2m.gz
# 1ujpA.t2k-thin90.a2m with 154 sequences, total weight= 25.2489 avg weight= 0.163954 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ujpA/info/1ujpA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1ujpA/nostruct-align/1ujpA.t2k-thin90.a2m.gz, have 79524 columns in 335 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h70A/nostruct-align/1h70A.t2k-thin90.a2m.gz
# 1h70A.t2k-thin90.a2m with 63 sequences, total weight= 56.7561 avg weight= 0.900891 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h70A/info/1h70A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h70A/nostruct-align/1h70A.t2k-thin90.a2m.gz, have 79779 columns in 336 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nkd/nostruct-align/1nkd.t2k-thin90.a2m.gz
# 1nkd.t2k-thin90.a2m with 13 sequences, total weight= 3.63376 avg weight= 0.27952 13 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nkd/info/1nkd.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nkd/nostruct-align/1nkd.t2k-thin90.a2m.gz, have 79838 columns in 337 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xdzA/nostruct-align/1xdzA.t2k-thin90.a2m.gz
# 1xdzA.t2k-thin90.a2m with 205 sequences, total weight= 132.378 avg weight= 0.645744 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30037 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xdzA/info/1xdzA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1xdzA/nostruct-align/1xdzA.t2k-thin90.a2m.gz, have 80076 columns in 338 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iv3A/nostruct-align/1iv3A.t2k-thin90.a2m.gz
# 1iv3A.t2k-thin90.a2m with 98 sequences, total weight= 10.055 avg weight= 0.102602 33 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iv3A/info/1iv3A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1iv3A/nostruct-align/1iv3A.t2k-thin90.a2m.gz, have 80226 columns in 339 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jatB/nostruct-align/1jatB.t2k-thin90.a2m.gz
# 1jatB.t2k-thin90.a2m with 165 sequences, total weight= 41.9075 avg weight= 0.253985 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jatB/info/1jatB.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jatB/nostruct-align/1jatB.t2k-thin90.a2m.gz, have 80358 columns in 340 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xfiA/nostruct-align/1xfiA.t2k-thin90.a2m.gz
# 1xfiA.t2k-thin90.a2m with 33 sequences, total weight= 22.0413 avg weight= 0.667918 26 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xfiA/info/1xfiA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1xfiA/nostruct-align/1xfiA.t2k-thin90.a2m.gz, have 80701 columns in 341 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1plc/nostruct-align/1plc.t2k-thin90.a2m.gz
# 1plc.t2k-thin90.a2m with 118 sequences, total weight= 101.813 avg weight= 0.862818 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1plc/info/1plc.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1plc/nostruct-align/1plc.t2k-thin90.a2m.gz, have 80800 columns in 342 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jf8A/nostruct-align/1jf8A.t2k-thin90.a2m.gz
# 1jf8A.t2k-thin90.a2m with 165 sequences, total weight= 81.0359 avg weight= 0.491127 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30067 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jf8A/info/1jf8A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jf8A/nostruct-align/1jf8A.t2k-thin90.a2m.gz, have 80930 columns in 343 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1odmA/nostruct-align/1odmA.t2k-thin90.a2m.gz
# 1odmA.t2k-thin90.a2m with 386 sequences, total weight= 183.715 avg weight= 0.475945 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30331 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1odmA/info/1odmA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1odmA/nostruct-align/1odmA.t2k-thin90.a2m.gz, have 81259 columns in 344 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ew4A/nostruct-align/1ew4A.t2k-thin90.a2m.gz
# 1ew4A.t2k-thin90.a2m with 40 sequences, total weight= 13.7324 avg weight= 0.34331 32 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ew4A/info/1ew4A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1ew4A/nostruct-align/1ew4A.t2k-thin90.a2m.gz, have 81365 columns in 345 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gutA/nostruct-align/1gutA.t2k-thin90.a2m.gz
# 1gutA.t2k-thin90.a2m with 126 sequences, total weight= 26.2968 avg weight= 0.208705 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gutA/info/1gutA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gutA/nostruct-align/1gutA.t2k-thin90.a2m.gz, have 81432 columns in 346 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wz8A/nostruct-align/1wz8A.t2k-thin90.a2m.gz
# 1wz8A.t2k-thin90.a2m with 1453 sequences, total weight= 660.688 avg weight= 0.454706 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31489 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wz8A/info/1wz8A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1wz8A/nostruct-align/1wz8A.t2k-thin90.a2m.gz, have 81695 columns in 347 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mxrA/nostruct-align/1mxrA.t2k-thin90.a2m.gz
# 1mxrA.t2k-thin90.a2m with 132 sequences, total weight= 83.8114 avg weight= 0.634935 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mxrA/info/1mxrA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mxrA/nostruct-align/1mxrA.t2k-thin90.a2m.gz, have 82034 columns in 348 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n6aA/nostruct-align/1n6aA.t2k-thin90.a2m.gz
# 1n6aA.t2k-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.616476 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n6aA/info/1n6aA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n6aA/nostruct-align/1n6aA.t2k-thin90.a2m.gz, have 82268 columns in 349 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ecsA/nostruct-align/1ecsA.t2k-thin90.a2m.gz
# 1ecsA.t2k-thin90.a2m with 88 sequences, total weight= 88 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09141 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ecsA/info/1ecsA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1ecsA/nostruct-align/1ecsA.t2k-thin90.a2m.gz, have 82388 columns in 350 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1of8A/nostruct-align/1of8A.t2k-thin90.a2m.gz
# 1of8A.t2k-thin90.a2m with 279 sequences, total weight= 23.0937 avg weight= 0.082773 39 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1of8A/info/1of8A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1of8A/nostruct-align/1of8A.t2k-thin90.a2m.gz, have 82727 columns in 351 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f7dA/nostruct-align/1f7dA.t2k-thin90.a2m.gz
# 1f7dA.t2k-thin90.a2m with 337 sequences, total weight= 165.074 avg weight= 0.489834 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30049 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f7dA/info/1f7dA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f7dA/nostruct-align/1f7dA.t2k-thin90.a2m.gz, have 82845 columns in 352 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lk9A/nostruct-align/1lk9A.t2k-thin90.a2m.gz
# 1lk9A.t2k-thin90.a2m with 64 sequences, total weight= 43.0491 avg weight= 0.672642 32 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lk9A/info/1lk9A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lk9A/nostruct-align/1lk9A.t2k-thin90.a2m.gz, have 83270 columns in 353 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pmhX/nostruct-align/1pmhX.t2k-thin90.a2m.gz
# 1pmhX.t2k-thin90.a2m with 9 sequences, total weight= 8.11525 avg weight= 0.901694 15 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pmhX/info/1pmhX.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pmhX/nostruct-align/1pmhX.t2k-thin90.a2m.gz, have 83453 columns in 354 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1yv4A/nostruct-align/1yv4A.t2k-thin90.a2m.gz
# 1yv4A.t2k-thin90.a2m with 166 sequences, total weight= 15.3028 avg weight= 0.0921853 38 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1yv4A/info/1yv4A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1y/1yv4A/nostruct-align/1yv4A.t2k-thin90.a2m.gz, have 83557 columns in 355 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qz5A/nostruct-align/1qz5A.t2k-thin90.a2m.gz
# 1qz5A.t2k-thin90.a2m with 322 sequences, total weight= 168.573 avg weight= 0.523518 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30299 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qz5A/info/1qz5A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qz5A/nostruct-align/1qz5A.t2k-thin90.a2m.gz, have 83916 columns in 356 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h99A/nostruct-align/1h99A.t2k-thin90.a2m.gz
# 1h99A.t2k-thin90.a2m with 133 sequences, total weight= 133 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08744 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h99A/info/1h99A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h99A/nostruct-align/1h99A.t2k-thin90.a2m.gz, have 84136 columns in 357 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1c9oA/nostruct-align/1c9oA.t2k-thin90.a2m.gz
# 1c9oA.t2k-thin90.a2m with 159 sequences, total weight= 15.7415 avg weight= 0.099003 39 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1c9oA/info/1c9oA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1c/1c9oA/nostruct-align/1c9oA.t2k-thin90.a2m.gz, have 84202 columns in 358 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1yx1A/nostruct-align/1yx1A.t2k-thin90.a2m.gz
# 1yx1A.t2k-thin90.a2m with 15 sequences, total weight= 14.3032 avg weight= 0.953547 19 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1yx1A/info/1yx1A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1y/1yx1A/nostruct-align/1yx1A.t2k-thin90.a2m.gz, have 84452 columns in 359 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1yy6A/nostruct-align/1yy6A.t2k-thin90.a2m.gz
# 1yy6A.t2k-thin90.a2m with 241 sequences, total weight= 241 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2158 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1yy6A/info/1yy6A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1y/1yy6A/nostruct-align/1yy6A.t2k-thin90.a2m.gz, have 84589 columns in 360 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iq6A/nostruct-align/1iq6A.t2k-thin90.a2m.gz
# 1iq6A.t2k-thin90.a2m with 213 sequences, total weight= 213 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24408 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iq6A/info/1iq6A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1iq6A/nostruct-align/1iq6A.t2k-thin90.a2m.gz, have 84721 columns in 361 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pwxA/nostruct-align/1pwxA.t2k-thin90.a2m.gz
# 1pwxA.t2k-thin90.a2m with 2669 sequences, total weight= 323.772 avg weight= 0.121308 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.32978 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pwxA/info/1pwxA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pwxA/nostruct-align/1pwxA.t2k-thin90.a2m.gz, have 84973 columns in 362 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1x7yA/nostruct-align/1x7yA.t2k-thin90.a2m.gz
# 1x7yA.t2k-thin90.a2m with 569 sequences, total weight= 500.092 avg weight= 0.878897 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30124 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1x7yA/info/1x7yA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1x7yA/nostruct-align/1x7yA.t2k-thin90.a2m.gz, have 85342 columns in 363 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rzhH/nostruct-align/1rzhH.t2k-thin90.a2m.gz
# 1rzhH.t2k-thin90.a2m with 26 sequences, total weight= 5.65916 avg weight= 0.21766 22 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rzhH/info/1rzhH.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rzhH/nostruct-align/1rzhH.t2k-thin90.a2m.gz, have 85580 columns in 364 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1es9A/nostruct-align/1es9A.t2k-thin90.a2m.gz
# 1es9A.t2k-thin90.a2m with 77 sequences, total weight= 77 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08556 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1es9A/info/1es9A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1es9A/nostruct-align/1es9A.t2k-thin90.a2m.gz, have 85792 columns in 365 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1ja1A/nostruct-align/1ja1A.t2k-thin90.a2m.gz
# 1ja1A.t2k-thin90.a2m with 200 sequences, total weight= 200 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27753 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1ja1A/info/1ja1A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1ja1A/nostruct-align/1ja1A.t2k-thin90.a2m.gz, have 86408 columns in 366 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n9pA/nostruct-align/1n9pA.t2k-thin90.a2m.gz
# 1n9pA.t2k-thin90.a2m with 37 sequences, total weight= 11.836 avg weight= 0.319891 27 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n9pA/info/1n9pA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n9pA/nostruct-align/1n9pA.t2k-thin90.a2m.gz, have 86605 columns in 367 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tp6A/nostruct-align/1tp6A.t2k-thin90.a2m.gz
# 1tp6A.t2k-thin90.a2m with 11 sequences, total weight= 6.14229 avg weight= 0.55839 18 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tp6A/info/1tp6A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tp6A/nostruct-align/1tp6A.t2k-thin90.a2m.gz, have 86731 columns in 368 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wnaA/nostruct-align/1wnaA.t2k-thin90.a2m.gz
# 1wnaA.t2k-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.939484 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wnaA/info/1wnaA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1wnaA/nostruct-align/1wnaA.t2k-thin90.a2m.gz, have 86858 columns in 369 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dszA/nostruct-align/1dszA.t2k-thin90.a2m.gz
# 1dszA.t2k-thin90.a2m with 366 sequences, total weight= 18.9413 avg weight= 0.0517521 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dszA/info/1dszA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dszA/nostruct-align/1dszA.t2k-thin90.a2m.gz, have 86933 columns in 370 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1yge/nostruct-align/1yge.t2k-thin90.a2m.gz
# 1yge.t2k-thin90.a2m with 113 sequences, total weight= 26.9548 avg weight= 0.238538 37 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1yge/info/1yge.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1y/1yge/nostruct-align/1yge.t2k-thin90.a2m.gz, have 87772 columns in 371 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gmxA/nostruct-align/1gmxA.t2k-thin90.a2m.gz
# 1gmxA.t2k-thin90.a2m with 512 sequences, total weight= 512 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29058 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gmxA/info/1gmxA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gmxA/nostruct-align/1gmxA.t2k-thin90.a2m.gz, have 87880 columns in 372 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fxlA/nostruct-align/1fxlA.t2k-thin90.a2m.gz
# 1fxlA.t2k-thin90.a2m with 865 sequences, total weight= 865 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20542 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fxlA/info/1fxlA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fxlA/nostruct-align/1fxlA.t2k-thin90.a2m.gz, have 88047 columns in 373 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1u4bA/nostruct-align/1u4bA.t2k-thin90.a2m.gz
# 1u4bA.t2k-thin90.a2m with 302 sequences, total weight= 302 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27431 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1u4bA/info/1u4bA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1u4bA/nostruct-align/1u4bA.t2k-thin90.a2m.gz, have 88627 columns in 374 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1u7iA/nostruct-align/1u7iA.t2k-thin90.a2m.gz
# 1u7iA.t2k-thin90.a2m with 127 sequences, total weight= 71.3046 avg weight= 0.561453 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1u7iA/info/1u7iA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1u7iA/nostruct-align/1u7iA.t2k-thin90.a2m.gz, have 88761 columns in 375 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1khiA/nostruct-align/1khiA.t2k-thin90.a2m.gz
# 1khiA.t2k-thin90.a2m with 41 sequences, total weight= 10.6751 avg weight= 0.260369 24 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1khiA/info/1khiA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1khiA/nostruct-align/1khiA.t2k-thin90.a2m.gz, have 88908 columns in 376 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m2dA/nostruct-align/1m2dA.t2k-thin90.a2m.gz
# 1m2dA.t2k-thin90.a2m with 106 sequences, total weight= 101.196 avg weight= 0.954676 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m2dA/info/1m2dA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m2dA/nostruct-align/1m2dA.t2k-thin90.a2m.gz, have 89009 columns in 377 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oohA/nostruct-align/1oohA.t2k-thin90.a2m.gz
# 1oohA.t2k-thin90.a2m with 96 sequences, total weight= 96 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0479 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oohA/info/1oohA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oohA/nostruct-align/1oohA.t2k-thin90.a2m.gz, have 89135 columns in 378 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d4oA/nostruct-align/1d4oA.t2k-thin90.a2m.gz
# 1d4oA.t2k-thin90.a2m with 56 sequences, total weight= 4.25931 avg weight= 0.0760592 21 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d4oA/info/1d4oA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1d/1d4oA/nostruct-align/1d4oA.t2k-thin90.a2m.gz, have 89312 columns in 379 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gk9A/nostruct-align/1gk9A.t2k-thin90.a2m.gz
# 1gk9A.t2k-thin90.a2m with 69 sequences, total weight= 54.0654 avg weight= 0.783556 41 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gk9A/info/1gk9A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gk9A/nostruct-align/1gk9A.t2k-thin90.a2m.gz, have 89520 columns in 380 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f46A/nostruct-align/1f46A.t2k-thin90.a2m.gz
# 1f46A.t2k-thin90.a2m with 23 sequences, total weight= 13.8981 avg weight= 0.604265 27 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f46A/info/1f46A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f46A/nostruct-align/1f46A.t2k-thin90.a2m.gz, have 89659 columns in 381 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dy5A/nostruct-align/1dy5A.t2k-thin90.a2m.gz
# 1dy5A.t2k-thin90.a2m with 143 sequences, total weight= 21.1263 avg weight= 0.147736 41 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dy5A/info/1dy5A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dy5A/nostruct-align/1dy5A.t2k-thin90.a2m.gz, have 89783 columns in 382 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mdc/nostruct-align/1mdc.t2k-thin90.a2m.gz
# 1mdc.t2k-thin90.a2m with 118 sequences, total weight= 27.0802 avg weight= 0.229494 37 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mdc/info/1mdc.stride-mixed.CB-burial-12-7
WARNING: skipping c, since it is lower case.
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mdc/nostruct-align/1mdc.t2k-thin90.a2m.gz, have 89914 columns in 383 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q6zA/nostruct-align/1q6zA.t2k-thin90.a2m.gz
# 1q6zA.t2k-thin90.a2m with 886 sequences, total weight= 886 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15652 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q6zA/info/1q6zA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q6zA/nostruct-align/1q6zA.t2k-thin90.a2m.gz, have 90438 columns in 384 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jf3A/nostruct-align/1jf3A.t2k-thin90.a2m.gz
# 1jf3A.t2k-thin90.a2m with 417 sequences, total weight= 162.12 avg weight= 0.388778 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3048 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jf3A/info/1jf3A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jf3A/nostruct-align/1jf3A.t2k-thin90.a2m.gz, have 90585 columns in 385 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vhvA/nostruct-align/1vhvA.t2k-thin90.a2m.gz
# 1vhvA.t2k-thin90.a2m with 243 sequences, total weight= 243 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24514 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vhvA/info/1vhvA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vhvA/nostruct-align/1vhvA.t2k-thin90.a2m.gz, have 90836 columns in 386 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n55A/nostruct-align/1n55A.t2k-thin90.a2m.gz
# 1n55A.t2k-thin90.a2m with 211 sequences, total weight= 27.0207 avg weight= 0.12806 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n55A/info/1n55A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n55A/nostruct-align/1n55A.t2k-thin90.a2m.gz, have 91085 columns in 387 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mtyD/nostruct-align/1mtyD.t2k-thin90.a2m.gz
# 1mtyD.t2k-thin90.a2m with 52 sequences, total weight= 26.5498 avg weight= 0.510572 28 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mtyD/info/1mtyD.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mtyD/nostruct-align/1mtyD.t2k-thin90.a2m.gz, have 91597 columns in 388 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o98A/nostruct-align/1o98A.t2k-thin90.a2m.gz
# 1o98A.t2k-thin90.a2m with 175 sequences, total weight= 175 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25207 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o98A/info/1o98A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o98A/nostruct-align/1o98A.t2k-thin90.a2m.gz, have 92106 columns in 389 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3p/3pviA/nostruct-align/3pviA.t2k-thin90.a2m.gz
# 3pviA.t2k-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24461 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3p/3pviA/info/3pviA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/3p/3pviA/nostruct-align/3pviA.t2k-thin90.a2m.gz, have 92262 columns in 390 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uehA/nostruct-align/1uehA.t2k-thin90.a2m.gz
# 1uehA.t2k-thin90.a2m with 188 sequences, total weight= 26.7944 avg weight= 0.142524 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uehA/info/1uehA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uehA/nostruct-align/1uehA.t2k-thin90.a2m.gz, have 92476 columns in 391 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q9uA/nostruct-align/1q9uA.t2k-thin90.a2m.gz
# 1q9uA.t2k-thin90.a2m with 42 sequences, total weight= 42 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22248 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q9uA/info/1q9uA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q9uA/nostruct-align/1q9uA.t2k-thin90.a2m.gz, have 92604 columns in 392 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gwuA/nostruct-align/1gwuA.t2k-thin90.a2m.gz
# 1gwuA.t2k-thin90.a2m with 366 sequences, total weight= 42.0511 avg weight= 0.114894 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gwuA/info/1gwuA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gwuA/nostruct-align/1gwuA.t2k-thin90.a2m.gz, have 92910 columns in 393 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n7hA/nostruct-align/1n7hA.t2k-thin90.a2m.gz
# 1n7hA.t2k-thin90.a2m with 891 sequences, total weight= 891 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1709 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n7hA/info/1n7hA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n7hA/nostruct-align/1n7hA.t2k-thin90.a2m.gz, have 93241 columns in 394 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q8fA/nostruct-align/1q8fA.t2k-thin90.a2m.gz
# 1q8fA.t2k-thin90.a2m with 161 sequences, total weight= 144.092 avg weight= 0.894979 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30035 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q8fA/info/1q8fA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q8fA/nostruct-align/1q8fA.t2k-thin90.a2m.gz, have 93549 columns in 395 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r2zA/nostruct-align/1r2zA.t2k-thin90.a2m.gz
# 1r2zA.t2k-thin90.a2m with 137 sequences, total weight= 51.7177 avg weight= 0.377502 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r2zA/info/1r2zA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r2zA/nostruct-align/1r2zA.t2k-thin90.a2m.gz, have 93822 columns in 396 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nwwA/nostruct-align/1nwwA.t2k-thin90.a2m.gz
# 1nwwA.t2k-thin90.a2m with 29 sequences, total weight= 29 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11869 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nwwA/info/1nwwA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nwwA/nostruct-align/1nwwA.t2k-thin90.a2m.gz, have 93967 columns in 397 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oq1A/nostruct-align/1oq1A.t2k-thin90.a2m.gz
# 1oq1A.t2k-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.61905 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oq1A/info/1oq1A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oq1A/nostruct-align/1oq1A.t2k-thin90.a2m.gz, have 94190 columns in 398 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qstA/nostruct-align/1qstA.t2k-thin90.a2m.gz
# 1qstA.t2k-thin90.a2m with 286 sequences, total weight= 286 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.983777 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qstA/info/1qstA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qstA/nostruct-align/1qstA.t2k-thin90.a2m.gz, have 94350 columns in 399 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k5nB/nostruct-align/1k5nB.t2k-thin90.a2m.gz
# 1k5nB.t2k-thin90.a2m with 886 sequences, total weight= 886 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26285 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k5nB/info/1k5nB.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k5nB/nostruct-align/1k5nB.t2k-thin90.a2m.gz, have 94450 columns in 400 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eaqA/nostruct-align/1eaqA.t2k-thin90.a2m.gz
# 1eaqA.t2k-thin90.a2m with 16 sequences, total weight= 3.38193 avg weight= 0.211371 14 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eaqA/info/1eaqA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1eaqA/nostruct-align/1eaqA.t2k-thin90.a2m.gz, have 94574 columns in 401 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i6lA/nostruct-align/1i6lA.t2k-thin90.a2m.gz
# 1i6lA.t2k-thin90.a2m with 244 sequences, total weight= 76.3138 avg weight= 0.312762 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30097 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i6lA/info/1i6lA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i6lA/nostruct-align/1i6lA.t2k-thin90.a2m.gz, have 94900 columns in 402 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xakA/nostruct-align/1xakA.t2k-thin90.a2m.gz
# 1xakA.t2k-thin90.a2m with 2 sequences, total weight= 1.99051 avg weight= 0.995254 5 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xakA/info/1xakA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1xakA/nostruct-align/1xakA.t2k-thin90.a2m.gz, have 94968 columns in 403 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3s/3seb/nostruct-align/3seb.t2k-thin90.a2m.gz
# 3seb.t2k-thin90.a2m with 53 sequences, total weight= 52.0103 avg weight= 0.981326 26 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3s/3seb/info/3seb.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/3s/3seb/nostruct-align/3seb.t2k-thin90.a2m.gz, have 95206 columns in 404 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d2vC/nostruct-align/1d2vC.t2k-thin90.a2m.gz
# 1d2vC.t2k-thin90.a2m with 124 sequences, total weight= 81.681 avg weight= 0.658717 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d2vC/info/1d2vC.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1d/1d2vC/nostruct-align/1d2vC.t2k-thin90.a2m.gz, have 95672 columns in 405 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qv1A/nostruct-align/1qv1A.t2k-thin90.a2m.gz
# 1qv1A.t2k-thin90.a2m with 561 sequences, total weight= 561 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14169 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qv1A/info/1qv1A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qv1A/nostruct-align/1qv1A.t2k-thin90.a2m.gz, have 95859 columns in 406 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1x74A/nostruct-align/1x74A.t2k-thin90.a2m.gz
# 1x74A.t2k-thin90.a2m with 581 sequences, total weight= 82.4572 avg weight= 0.141923 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30228 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1x74A/info/1x74A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1x74A/nostruct-align/1x74A.t2k-thin90.a2m.gz, have 96213 columns in 407 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qreA/nostruct-align/1qreA.t2k-thin90.a2m.gz
# 1qreA.t2k-thin90.a2m with 238 sequences, total weight= 238 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15538 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qreA/info/1qreA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qreA/nostruct-align/1qreA.t2k-thin90.a2m.gz, have 96423 columns in 408 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ow4A/nostruct-align/1ow4A.t2k-thin90.a2m.gz
# 1ow4A.t2k-thin90.a2m with 51 sequences, total weight= 51 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07107 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ow4A/info/1ow4A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1ow4A/nostruct-align/1ow4A.t2k-thin90.a2m.gz, have 96543 columns in 409 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mw9X/nostruct-align/1mw9X.t2k-thin90.a2m.gz
# 1mw9X.t2k-thin90.a2m with 277 sequences, total weight= 69.9931 avg weight= 0.252683 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30141 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mw9X/info/1mw9X.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mw9X/nostruct-align/1mw9X.t2k-thin90.a2m.gz, have 97099 columns in 410 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n57A/nostruct-align/1n57A.t2k-thin90.a2m.gz
# 1n57A.t2k-thin90.a2m with 76 sequences, total weight= 50.6808 avg weight= 0.666853 34 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n57A/info/1n57A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n57A/nostruct-align/1n57A.t2k-thin90.a2m.gz, have 97378 columns in 411 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t4bA/nostruct-align/1t4bA.t2k-thin90.a2m.gz
# 1t4bA.t2k-thin90.a2m with 184 sequences, total weight= 27.4248 avg weight= 0.149048 45 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t4bA/info/1t4bA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t4bA/nostruct-align/1t4bA.t2k-thin90.a2m.gz, have 97745 columns in 412 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mj5A/nostruct-align/1mj5A.t2k-thin90.a2m.gz
# 1mj5A.t2k-thin90.a2m with 783 sequences, total weight= 783 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.942856 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mj5A/info/1mj5A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mj5A/nostruct-align/1mj5A.t2k-thin90.a2m.gz, have 98042 columns in 413 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o08A/nostruct-align/1o08A.t2k-thin90.a2m.gz
# 1o08A.t2k-thin90.a2m with 579 sequences, total weight= 579 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02241 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o08A/info/1o08A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o08A/nostruct-align/1o08A.t2k-thin90.a2m.gz, have 98263 columns in 414 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hxiA/nostruct-align/1hxiA.t2k-thin90.a2m.gz
# 1hxiA.t2k-thin90.a2m with 449 sequences, total weight= 449 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12906 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hxiA/info/1hxiA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hxiA/nostruct-align/1hxiA.t2k-thin90.a2m.gz, have 98375 columns in 415 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1od6A/nostruct-align/1od6A.t2k-thin90.a2m.gz
# 1od6A.t2k-thin90.a2m with 190 sequences, total weight= 190 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17838 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1od6A/info/1od6A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1od6A/nostruct-align/1od6A.t2k-thin90.a2m.gz, have 98530 columns in 416 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jbeA/nostruct-align/1jbeA.t2k-thin90.a2m.gz
# 1jbeA.t2k-thin90.a2m with 1602 sequences, total weight= 585.78 avg weight= 0.365655 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31845 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jbeA/info/1jbeA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jbeA/nostruct-align/1jbeA.t2k-thin90.a2m.gz, have 98656 columns in 417 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uzvA/nostruct-align/1uzvA.t2k-thin90.a2m.gz
# 1uzvA.t2k-thin90.a2m with 12 sequences, total weight= 5.02259 avg weight= 0.418549 18 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uzvA/info/1uzvA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uzvA/nostruct-align/1uzvA.t2k-thin90.a2m.gz, have 98770 columns in 418 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wehA/nostruct-align/1wehA.t2k-thin90.a2m.gz
# 1wehA.t2k-thin90.a2m with 239 sequences, total weight= 39.6635 avg weight= 0.165956 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wehA/info/1wehA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1wehA/nostruct-align/1wehA.t2k-thin90.a2m.gz, have 98941 columns in 419 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wojA/nostruct-align/1wojA.t2k-thin90.a2m.gz
# 1wojA.t2k-thin90.a2m with 9 sequences, total weight= 3.07563 avg weight= 0.341736 14 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wojA/info/1wojA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1wojA/nostruct-align/1wojA.t2k-thin90.a2m.gz, have 99150 columns in 420 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lyqA/nostruct-align/1lyqA.t2k-thin90.a2m.gz
# 1lyqA.t2k-thin90.a2m with 42 sequences, total weight= 20.379 avg weight= 0.485214 38 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lyqA/info/1lyqA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lyqA/nostruct-align/1lyqA.t2k-thin90.a2m.gz, have 99251 columns in 421 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dmgA/nostruct-align/1dmgA.t2k-thin90.a2m.gz
# 1dmgA.t2k-thin90.a2m with 150 sequences, total weight= 59.5052 avg weight= 0.396701 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dmgA/info/1dmgA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dmgA/nostruct-align/1dmgA.t2k-thin90.a2m.gz, have 99423 columns in 422 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2b/2bemA/nostruct-align/2bemA.t2k-thin90.a2m.gz
# 2bemA.t2k-thin90.a2m with 69 sequences, total weight= 24.0757 avg weight= 0.348924 41 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2b/2bemA/info/2bemA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/2b/2bemA/nostruct-align/2bemA.t2k-thin90.a2m.gz, have 99593 columns in 423 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1msk/nostruct-align/1msk.t2k-thin90.a2m.gz
# 1msk.t2k-thin90.a2m with 72 sequences, total weight= 16.9298 avg weight= 0.235136 31 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1msk/info/1msk.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1msk/nostruct-align/1msk.t2k-thin90.a2m.gz, have 99920 columns in 424 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1z/1zceA/nostruct-align/1zceA.t2k-thin90.a2m.gz
# 1zceA.t2k-thin90.a2m with 89 sequences, total weight= 14.7334 avg weight= 0.165544 31 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1z/1zceA/info/1zceA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1z/1zceA/nostruct-align/1zceA.t2k-thin90.a2m.gz, have 100066 columns in 425 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xd3A/nostruct-align/1xd3A.t2k-thin90.a2m.gz
# 1xd3A.t2k-thin90.a2m with 90 sequences, total weight= 26.9356 avg weight= 0.299284 44 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xd3A/info/1xd3A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1xd3A/nostruct-align/1xd3A.t2k-thin90.a2m.gz, have 100295 columns in 426 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1y7bA/nostruct-align/1y7bA.t2k-thin90.a2m.gz
# 1y7bA.t2k-thin90.a2m with 191 sequences, total weight= 191 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08838 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1y7bA/info/1y7bA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1y/1y7bA/nostruct-align/1y7bA.t2k-thin90.a2m.gz, have 100829 columns in 427 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dkiA/nostruct-align/1dkiA.t2k-thin90.a2m.gz
# 1dkiA.t2k-thin90.a2m with 6 sequences, total weight= 6 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11248 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dkiA/info/1dkiA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dkiA/nostruct-align/1dkiA.t2k-thin90.a2m.gz, have 101132 columns in 428 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ofzA/nostruct-align/1ofzA.t2k-thin90.a2m.gz
# 1ofzA.t2k-thin90.a2m with 4 sequences, total weight= 3.78639 avg weight= 0.946597 9 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ofzA/info/1ofzA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1ofzA/nostruct-align/1ofzA.t2k-thin90.a2m.gz, have 101444 columns in 429 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hqsA/nostruct-align/1hqsA.t2k-thin90.a2m.gz
# 1hqsA.t2k-thin90.a2m with 206 sequences, total weight= 39.6736 avg weight= 0.19259 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hqsA/info/1hqsA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hqsA/nostruct-align/1hqsA.t2k-thin90.a2m.gz, have 101867 columns in 430 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1ds1A/nostruct-align/1ds1A.t2k-thin90.a2m.gz
# 1ds1A.t2k-thin90.a2m with 43 sequences, total weight= 43 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0359 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1ds1A/info/1ds1A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1d/1ds1A/nostruct-align/1ds1A.t2k-thin90.a2m.gz, have 102190 columns in 431 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g8qA/nostruct-align/1g8qA.t2k-thin90.a2m.gz
# 1g8qA.t2k-thin90.a2m with 22 sequences, total weight= 15.5542 avg weight= 0.707011 28 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g8qA/info/1g8qA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1g8qA/nostruct-align/1g8qA.t2k-thin90.a2m.gz, have 102280 columns in 432 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1c7kA/nostruct-align/1c7kA.t2k-thin90.a2m.gz
# 1c7kA.t2k-thin90.a2m with 7 sequences, total weight= 2.90722 avg weight= 0.415317 12 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1c7kA/info/1c7kA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1c/1c7kA/nostruct-align/1c7kA.t2k-thin90.a2m.gz, have 102412 columns in 433 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mwpA/nostruct-align/1mwpA.t2k-thin90.a2m.gz
# 1mwpA.t2k-thin90.a2m with 10 sequences, total weight= 4.29524 avg weight= 0.429524 18 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mwpA/info/1mwpA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mwpA/nostruct-align/1mwpA.t2k-thin90.a2m.gz, have 102508 columns in 434 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kicA/nostruct-align/1kicA.t2k-thin90.a2m.gz
# 1kicA.t2k-thin90.a2m with 117 sequences, total weight= 108.151 avg weight= 0.924365 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kicA/info/1kicA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kicA/nostruct-align/1kicA.t2k-thin90.a2m.gz, have 102825 columns in 435 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1ntyA/nostruct-align/1ntyA.t2k-thin90.a2m.gz
# 1ntyA.t2k-thin90.a2m with 392 sequences, total weight= 392 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09141 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1ntyA/info/1ntyA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1ntyA/nostruct-align/1ntyA.t2k-thin90.a2m.gz, have 103130 columns in 436 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1ny1A/nostruct-align/1ny1A.t2k-thin90.a2m.gz
# 1ny1A.t2k-thin90.a2m with 268 sequences, total weight= 268 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09725 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1ny1A/info/1ny1A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1ny1A/nostruct-align/1ny1A.t2k-thin90.a2m.gz, have 103365 columns in 437 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o1yA/nostruct-align/1o1yA.t2k-thin90.a2m.gz
# 1o1yA.t2k-thin90.a2m with 539 sequences, total weight= 539 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14823 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o1yA/info/1o1yA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o1yA/nostruct-align/1o1yA.t2k-thin90.a2m.gz, have 103595 columns in 438 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t92A/nostruct-align/1t92A.t2k-thin90.a2m.gz
# 1t92A.t2k-thin90.a2m with 63 sequences, total weight= 10.9303 avg weight= 0.173496 31 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t92A/info/1t92A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t92A/nostruct-align/1t92A.t2k-thin90.a2m.gz, have 103703 columns in 439 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1izcA/nostruct-align/1izcA.t2k-thin90.a2m.gz
# 1izcA.t2k-thin90.a2m with 91 sequences, total weight= 74.4906 avg weight= 0.818578 35 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1izcA/info/1izcA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1izcA/nostruct-align/1izcA.t2k-thin90.a2m.gz, have 104002 columns in 440 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k8uA/nostruct-align/1k8uA.t2k-thin90.a2m.gz
# 1k8uA.t2k-thin90.a2m with 453 sequences, total weight= 98.1401 avg weight= 0.216645 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3009 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k8uA/info/1k8uA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k8uA/nostruct-align/1k8uA.t2k-thin90.a2m.gz, have 104091 columns in 441 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ig0A/nostruct-align/1ig0A.t2k-thin90.a2m.gz
# 1ig0A.t2k-thin90.a2m with 25 sequences, total weight= 23.9005 avg weight= 0.956018 17 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ig0A/info/1ig0A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1ig0A/nostruct-align/1ig0A.t2k-thin90.a2m.gz, have 104408 columns in 442 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fi2A/nostruct-align/1fi2A.t2k-thin90.a2m.gz
# 1fi2A.t2k-thin90.a2m with 190 sequences, total weight= 190 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25143 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fi2A/info/1fi2A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fi2A/nostruct-align/1fi2A.t2k-thin90.a2m.gz, have 104609 columns in 443 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1ddwA/nostruct-align/1ddwA.t2k-thin90.a2m.gz
# 1ddwA.t2k-thin90.a2m with 13 sequences, total weight= 4.79748 avg weight= 0.369037 16 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1ddwA/info/1ddwA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1d/1ddwA/nostruct-align/1ddwA.t2k-thin90.a2m.gz, have 104720 columns in 444 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p1xA/nostruct-align/1p1xA.t2k-thin90.a2m.gz
# 1p1xA.t2k-thin90.a2m with 123 sequences, total weight= 23.7406 avg weight= 0.193013 42 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p1xA/info/1p1xA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1p1xA/nostruct-align/1p1xA.t2k-thin90.a2m.gz, have 104970 columns in 445 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1ydyA/nostruct-align/1ydyA.t2k-thin90.a2m.gz
# 1ydyA.t2k-thin90.a2m with 395 sequences, total weight= 395 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01561 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1ydyA/info/1ydyA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1y/1ydyA/nostruct-align/1ydyA.t2k-thin90.a2m.gz, have 105298 columns in 446 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kw4A/nostruct-align/1kw4A.t2k-thin90.a2m.gz
# 1kw4A.t2k-thin90.a2m with 86 sequences, total weight= 54.2964 avg weight= 0.631353 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kw4A/info/1kw4A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kw4A/nostruct-align/1kw4A.t2k-thin90.a2m.gz, have 105368 columns in 447 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m4jA/nostruct-align/1m4jA.t2k-thin90.a2m.gz
# 1m4jA.t2k-thin90.a2m with 93 sequences, total weight= 74.5492 avg weight= 0.801605 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m4jA/info/1m4jA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m4jA/nostruct-align/1m4jA.t2k-thin90.a2m.gz, have 105501 columns in 448 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t6cA/nostruct-align/1t6cA.t2k-thin90.a2m.gz
# 1t6cA.t2k-thin90.a2m with 189 sequences, total weight= 176.574 avg weight= 0.934253 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30036 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t6cA/info/1t6cA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t6cA/nostruct-align/1t6cA.t2k-thin90.a2m.gz, have 105807 columns in 449 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w27A/nostruct-align/1w27A.t2k-thin90.a2m.gz
# 1w27A.t2k-thin90.a2m with 219 sequences, total weight= 32.823 avg weight= 0.149877 39 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w27A/info/1w27A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1w27A/nostruct-align/1w27A.t2k-thin90.a2m.gz, have 106497 columns in 450 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o7nA/nostruct-align/1o7nA.t2k-thin90.a2m.gz
# 1o7nA.t2k-thin90.a2m with 296 sequences, total weight= 296 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01028 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o7nA/info/1o7nA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o7nA/nostruct-align/1o7nA.t2k-thin90.a2m.gz, have 106944 columns in 451 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1ak0/nostruct-align/1ak0.t2k-thin90.a2m.gz
# 1ak0.t2k-thin90.a2m with 41 sequences, total weight= 38.0017 avg weight= 0.926871 34 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1ak0/info/1ak0.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1a/1ak0/nostruct-align/1ak0.t2k-thin90.a2m.gz, have 107208 columns in 452 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/25/256bA/nostruct-align/256bA.t2k-thin90.a2m.gz
# 256bA.t2k-thin90.a2m with 9 sequences, total weight= 7.39616 avg weight= 0.821795 17 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/25/256bA/info/256bA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/25/256bA/nostruct-align/256bA.t2k-thin90.a2m.gz, have 107314 columns in 453 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q2hA/nostruct-align/1q2hA.t2k-thin90.a2m.gz
# 1q2hA.t2k-thin90.a2m with 10 sequences, total weight= 5.21909 avg weight= 0.521909 17 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q2hA/info/1q2hA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q2hA/nostruct-align/1q2hA.t2k-thin90.a2m.gz, have 107377 columns in 454 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h5qA/nostruct-align/1h5qA.t2k-thin90.a2m.gz
# 1h5qA.t2k-thin90.a2m with 1530 sequences, total weight= 1530 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20779 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h5qA/info/1h5qA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h5qA/nostruct-align/1h5qA.t2k-thin90.a2m.gz, have 107637 columns in 455 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rgxA/nostruct-align/1rgxA.t2k-thin90.a2m.gz
# 1rgxA.t2k-thin90.a2m with 11 sequences, total weight= 3.09705 avg weight= 0.28155 18 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rgxA/info/1rgxA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rgxA/nostruct-align/1rgxA.t2k-thin90.a2m.gz, have 107726 columns in 456 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tyv/nostruct-align/1tyv.t2k-thin90.a2m.gz
# 1tyv.t2k-thin90.a2m with 3 sequences, total weight= 2.72774 avg weight= 0.909247 8 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tyv/info/1tyv.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tyv/nostruct-align/1tyv.t2k-thin90.a2m.gz, have 108268 columns in 457 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tqhA/nostruct-align/1tqhA.t2k-thin90.a2m.gz
# 1tqhA.t2k-thin90.a2m with 703 sequences, total weight= 703 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.882692 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tqhA/info/1tqhA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tqhA/nostruct-align/1tqhA.t2k-thin90.a2m.gz, have 108510 columns in 458 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fdr/nostruct-align/1fdr.t2k-thin90.a2m.gz
# 1fdr.t2k-thin90.a2m with 194 sequences, total weight= 194 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19366 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fdr/info/1fdr.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fdr/nostruct-align/1fdr.t2k-thin90.a2m.gz, have 108754 columns in 459 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1chd/nostruct-align/1chd.t2k-thin90.a2m.gz
# 1chd.t2k-thin90.a2m with 146 sequences, total weight= 28.0285 avg weight= 0.191976 44 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1chd/info/1chd.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1c/1chd/nostruct-align/1chd.t2k-thin90.a2m.gz, have 108952 columns in 460 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a3c/nostruct-align/1a3c.t2k-thin90.a2m.gz
# 1a3c.t2k-thin90.a2m with 206 sequences, total weight= 206 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22554 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1a3c/info/1a3c.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1a/1a3c/nostruct-align/1a3c.t2k-thin90.a2m.gz, have 109118 columns in 461 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fyeA/nostruct-align/1fyeA.t2k-thin90.a2m.gz
# 1fyeA.t2k-thin90.a2m with 36 sequences, total weight= 36 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21899 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fyeA/info/1fyeA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fyeA/nostruct-align/1fyeA.t2k-thin90.a2m.gz, have 109338 columns in 462 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ia8A/nostruct-align/1ia8A.t2k-thin90.a2m.gz
# 1ia8A.t2k-thin90.a2m with 3254 sequences, total weight= 3254 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17126 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ia8A/info/1ia8A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1ia8A/nostruct-align/1ia8A.t2k-thin90.a2m.gz, have 109610 columns in 463 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k5nA/nostruct-align/1k5nA.t2k-thin90.a2m.gz
# 1k5nA.t2k-thin90.a2m with 2229 sequences, total weight= 2229 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21468 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k5nA/info/1k5nA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k5nA/nostruct-align/1k5nA.t2k-thin90.a2m.gz, have 109886 columns in 464 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hfuA/nostruct-align/1hfuA.t2k-thin90.a2m.gz
# 1hfuA.t2k-thin90.a2m with 239 sequences, total weight= 239 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20104 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hfuA/info/1hfuA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hfuA/nostruct-align/1hfuA.t2k-thin90.a2m.gz, have 110386 columns in 465 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1ym3A/nostruct-align/1ym3A.t2k-thin90.a2m.gz
# 1ym3A.t2k-thin90.a2m with 288 sequences, total weight= 99.5029 avg weight= 0.345496 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30304 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1ym3A/info/1ym3A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1y/1ym3A/nostruct-align/1ym3A.t2k-thin90.a2m.gz, have 110579 columns in 466 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e30A/nostruct-align/1e30A.t2k-thin90.a2m.gz
# 1e30A.t2k-thin90.a2m with 57 sequences, total weight= 46.106 avg weight= 0.808877 29 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e30A/info/1e30A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e30A/nostruct-align/1e30A.t2k-thin90.a2m.gz, have 110732 columns in 467 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rttA/nostruct-align/1rttA.t2k-thin90.a2m.gz
# 1rttA.t2k-thin90.a2m with 355 sequences, total weight= 355 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14206 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rttA/info/1rttA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rttA/nostruct-align/1rttA.t2k-thin90.a2m.gz, have 110906 columns in 468 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fl0A/nostruct-align/1fl0A.t2k-thin90.a2m.gz
# 1fl0A.t2k-thin90.a2m with 225 sequences, total weight= 44.2355 avg weight= 0.196602 37 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fl0A/info/1fl0A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fl0A/nostruct-align/1fl0A.t2k-thin90.a2m.gz, have 111070 columns in 469 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tovA/nostruct-align/1tovA.t2k-thin90.a2m.gz
# 1tovA.t2k-thin90.a2m with 142 sequences, total weight= 36.3167 avg weight= 0.255751 43 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tovA/info/1tovA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tovA/nostruct-align/1tovA.t2k-thin90.a2m.gz, have 111167 columns in 470 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dqeA/nostruct-align/1dqeA.t2k-thin90.a2m.gz
# 1dqeA.t2k-thin90.a2m with 55 sequences, total weight= 31.9137 avg weight= 0.58025 36 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dqeA/info/1dqeA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dqeA/nostruct-align/1dqeA.t2k-thin90.a2m.gz, have 111304 columns in 471 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i0lA/nostruct-align/1i0lA.t2k-thin90.a2m.gz
# 1i0lA.t2k-thin90.a2m with 215 sequences, total weight= 85.9332 avg weight= 0.399689 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30038 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i0lA/info/1i0lA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i0lA/nostruct-align/1i0lA.t2k-thin90.a2m.gz, have 111496 columns in 472 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fcyA/nostruct-align/1fcyA.t2k-thin90.a2m.gz
# 1fcyA.t2k-thin90.a2m with 243 sequences, total weight= 243 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15424 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fcyA/info/1fcyA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fcyA/nostruct-align/1fcyA.t2k-thin90.a2m.gz, have 111732 columns in 473 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nox/nostruct-align/1nox.t2k-thin90.a2m.gz
# 1nox.t2k-thin90.a2m with 365 sequences, total weight= 365 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07978 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nox/info/1nox.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nox/nostruct-align/1nox.t2k-thin90.a2m.gz, have 111932 columns in 474 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ug4A/nostruct-align/1ug4A.t2k-thin90.a2m.gz
# 1ug4A.t2k-thin90.a2m with 143 sequences, total weight= 19.3202 avg weight= 0.135106 42 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ug4A/info/1ug4A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1ug4A/nostruct-align/1ug4A.t2k-thin90.a2m.gz, have 111992 columns in 475 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1onwA/nostruct-align/1onwA.t2k-thin90.a2m.gz
# 1onwA.t2k-thin90.a2m with 467 sequences, total weight= 467 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.950063 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1onwA/info/1onwA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1onwA/nostruct-align/1onwA.t2k-thin90.a2m.gz, have 112368 columns in 476 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t0pB/nostruct-align/1t0pB.t2k-thin90.a2m.gz
# 1t0pB.t2k-thin90.a2m with 34 sequences, total weight= 10.3355 avg weight= 0.303985 28 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t0pB/info/1t0pB.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t0pB/nostruct-align/1t0pB.t2k-thin90.a2m.gz, have 112454 columns in 477 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ijqA/nostruct-align/1ijqA.t2k-thin90.a2m.gz
# 1ijqA.t2k-thin90.a2m with 234 sequences, total weight= 234 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18568 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ijqA/info/1ijqA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1ijqA/nostruct-align/1ijqA.t2k-thin90.a2m.gz, have 112762 columns in 478 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e1hA/nostruct-align/1e1hA.t2k-thin90.a2m.gz
# 1e1hA.t2k-thin90.a2m with 18 sequences, total weight= 7.49307 avg weight= 0.416281 22 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e1hA/info/1e1hA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e1hA/nostruct-align/1e1hA.t2k-thin90.a2m.gz, have 112997 columns in 479 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nepA/nostruct-align/1nepA.t2k-thin90.a2m.gz
# 1nepA.t2k-thin90.a2m with 38 sequences, total weight= 25.521 avg weight= 0.671606 37 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nepA/info/1nepA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nepA/nostruct-align/1nepA.t2k-thin90.a2m.gz, have 113127 columns in 480 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w41A/nostruct-align/1w41A.t2k-thin90.a2m.gz
# 1w41A.t2k-thin90.a2m with 141 sequences, total weight= 33.3124 avg weight= 0.236258 43 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w41A/info/1w41A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1w41A/nostruct-align/1w41A.t2k-thin90.a2m.gz, have 113226 columns in 481 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s2wA/nostruct-align/1s2wA.t2k-thin90.a2m.gz
# 1s2wA.t2k-thin90.a2m with 203 sequences, total weight= 50.7036 avg weight= 0.249771 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s2wA/info/1s2wA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1s/1s2wA/nostruct-align/1s2wA.t2k-thin90.a2m.gz, have 113484 columns in 482 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1u60A/nostruct-align/1u60A.t2k-thin90.a2m.gz
# 1u60A.t2k-thin90.a2m with 90 sequences, total weight= 15.4567 avg weight= 0.171741 36 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1u60A/info/1u60A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1u60A/nostruct-align/1u60A.t2k-thin90.a2m.gz, have 113793 columns in 483 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jg1A/nostruct-align/1jg1A.t2k-thin90.a2m.gz
# 1jg1A.t2k-thin90.a2m with 454 sequences, total weight= 454 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.894937 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jg1A/info/1jg1A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jg1A/nostruct-align/1jg1A.t2k-thin90.a2m.gz, have 114008 columns in 484 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f3uB/nostruct-align/1f3uB.t2k-thin90.a2m.gz
# 1f3uB.t2k-thin90.a2m with 8 sequences, total weight= 5.19588 avg weight= 0.649485 15 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f3uB/info/1f3uB.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f3uB/nostruct-align/1f3uB.t2k-thin90.a2m.gz, have 114147 columns in 485 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mxiA/nostruct-align/1mxiA.t2k-thin90.a2m.gz
# 1mxiA.t2k-thin90.a2m with 258 sequences, total weight= 107.228 avg weight= 0.415613 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30213 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mxiA/info/1mxiA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mxiA/nostruct-align/1mxiA.t2k-thin90.a2m.gz, have 114303 columns in 486 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tbfA/nostruct-align/1tbfA.t2k-thin90.a2m.gz
# 1tbfA.t2k-thin90.a2m with 167 sequences, total weight= 59.4535 avg weight= 0.356009 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tbfA/info/1tbfA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tbfA/nostruct-align/1tbfA.t2k-thin90.a2m.gz, have 114629 columns in 487 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rh6A/nostruct-align/1rh6A.t2k-thin90.a2m.gz
# 1rh6A.t2k-thin90.a2m with 6 sequences, total weight= 5.44098 avg weight= 0.906831 15 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rh6A/info/1rh6A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rh6A/nostruct-align/1rh6A.t2k-thin90.a2m.gz, have 114684 columns in 488 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jfxA/nostruct-align/1jfxA.t2k-thin90.a2m.gz
# 1jfxA.t2k-thin90.a2m with 95 sequences, total weight= 95 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19091 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jfxA/info/1jfxA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jfxA/nostruct-align/1jfxA.t2k-thin90.a2m.gz, have 114901 columns in 489 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j79A/nostruct-align/1j79A.t2k-thin90.a2m.gz
# 1j79A.t2k-thin90.a2m with 118 sequences, total weight= 57.7262 avg weight= 0.489205 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j79A/info/1j79A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j79A/nostruct-align/1j79A.t2k-thin90.a2m.gz, have 115244 columns in 490 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o9wA/nostruct-align/1o9wA.t2k-thin90.a2m.gz
# 1o9wA.t2k-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.623702 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o9wA/info/1o9wA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o9wA/nostruct-align/1o9wA.t2k-thin90.a2m.gz, have 115413 columns in 491 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m70A/nostruct-align/1m70A.t2k-thin90.a2m.gz
# 1m70A.t2k-thin90.a2m with 299 sequences, total weight= 299 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13622 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m70A/info/1m70A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m70A/nostruct-align/1m70A.t2k-thin90.a2m.gz, have 115603 columns in 492 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pxzA/nostruct-align/1pxzA.t2k-thin90.a2m.gz
# 1pxzA.t2k-thin90.a2m with 177 sequences, total weight= 75.4329 avg weight= 0.426175 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pxzA/info/1pxzA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pxzA/nostruct-align/1pxzA.t2k-thin90.a2m.gz, have 115949 columns in 493 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vmbA/nostruct-align/1vmbA.t2k-thin90.a2m.gz
# 1vmbA.t2k-thin90.a2m with 157 sequences, total weight= 59.0381 avg weight= 0.376039 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vmbA/info/1vmbA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vmbA/nostruct-align/1vmbA.t2k-thin90.a2m.gz, have 116056 columns in 494 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2b/2bjuA/nostruct-align/2bjuA.t2k-thin90.a2m.gz
# 2bjuA.t2k-thin90.a2m with 708 sequences, total weight= 341.868 avg weight= 0.482865 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30735 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2b/2bjuA/info/2bjuA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/2b/2bjuA/nostruct-align/2bjuA.t2k-thin90.a2m.gz, have 116385 columns in 495 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lq9A/nostruct-align/1lq9A.t2k-thin90.a2m.gz
# 1lq9A.t2k-thin90.a2m with 11 sequences, total weight= 11 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2657 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lq9A/info/1lq9A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lq9A/nostruct-align/1lq9A.t2k-thin90.a2m.gz, have 116497 columns in 496 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p90A/nostruct-align/1p90A.t2k-thin90.a2m.gz
# 1p90A.t2k-thin90.a2m with 89 sequences, total weight= 40.6452 avg weight= 0.456687 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p90A/info/1p90A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1p90A/nostruct-align/1p90A.t2k-thin90.a2m.gz, have 116620 columns in 497 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1z/1zin/nostruct-align/1zin.t2k-thin90.a2m.gz
# 1zin.t2k-thin90.a2m with 199 sequences, total weight= 199 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22769 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1z/1zin/info/1zin.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1z/1zin/nostruct-align/1zin.t2k-thin90.a2m.gz, have 116837 columns in 498 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l5oA/nostruct-align/1l5oA.t2k-thin90.a2m.gz
# 1l5oA.t2k-thin90.a2m with 71 sequences, total weight= 17.1386 avg weight= 0.241388 32 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l5oA/info/1l5oA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1l/1l5oA/nostruct-align/1l5oA.t2k-thin90.a2m.gz, have 117183 columns in 499 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qddA/nostruct-align/1qddA.t2k-thin90.a2m.gz
# 1qddA.t2k-thin90.a2m with 594 sequences, total weight= 594 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.061 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qddA/info/1qddA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qddA/nostruct-align/1qddA.t2k-thin90.a2m.gz, have 117327 columns in 500 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jhfA/nostruct-align/1jhfA.t2k-thin90.a2m.gz
# 1jhfA.t2k-thin90.a2m with 177 sequences, total weight= 177 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28115 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jhfA/info/1jhfA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jhfA/nostruct-align/1jhfA.t2k-thin90.a2m.gz, have 117524 columns in 501 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d4aA/nostruct-align/1d4aA.t2k-thin90.a2m.gz
# 1d4aA.t2k-thin90.a2m with 197 sequences, total weight= 103.503 avg weight= 0.525395 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d4aA/info/1d4aA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1d/1d4aA/nostruct-align/1d4aA.t2k-thin90.a2m.gz, have 117797 columns in 502 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rgzA/nostruct-align/1rgzA.t2k-thin90.a2m.gz
# 1rgzA.t2k-thin90.a2m with 689 sequences, total weight= 689 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04161 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rgzA/info/1rgzA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rgzA/nostruct-align/1rgzA.t2k-thin90.a2m.gz, have 118160 columns in 503 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s3eA/nostruct-align/1s3eA.t2k-thin90.a2m.gz
# 1s3eA.t2k-thin90.a2m with 3004 sequences, total weight= 3004 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.7085 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s3eA/info/1s3eA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1s/1s3eA/nostruct-align/1s3eA.t2k-thin90.a2m.gz, have 118659 columns in 504 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tn6B/nostruct-align/1tn6B.t2k-thin90.a2m.gz
# 1tn6B.t2k-thin90.a2m with 116 sequences, total weight= 114.78 avg weight= 0.989481 35 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tn6B/info/1tn6B.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tn6B/nostruct-align/1tn6B.t2k-thin90.a2m.gz, have 119069 columns in 505 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h80A/nostruct-align/1h80A.t2k-thin90.a2m.gz
# 1h80A.t2k-thin90.a2m with 92 sequences, total weight= 92 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19248 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h80A/info/1h80A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h80A/nostruct-align/1h80A.t2k-thin90.a2m.gz, have 119502 columns in 506 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sqsA/nostruct-align/1sqsA.t2k-thin90.a2m.gz
# 1sqsA.t2k-thin90.a2m with 132 sequences, total weight= 132 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17458 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sqsA/info/1sqsA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sqsA/nostruct-align/1sqsA.t2k-thin90.a2m.gz, have 119734 columns in 507 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ix9A/nostruct-align/1ix9A.t2k-thin90.a2m.gz
# 1ix9A.t2k-thin90.a2m with 310 sequences, total weight= 22.5652 avg weight= 0.0727909 45 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ix9A/info/1ix9A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1ix9A/nostruct-align/1ix9A.t2k-thin90.a2m.gz, have 119939 columns in 508 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n97A/nostruct-align/1n97A.t2k-thin90.a2m.gz
# 1n97A.t2k-thin90.a2m with 1678 sequences, total weight= 1678 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10027 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n97A/info/1n97A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n97A/nostruct-align/1n97A.t2k-thin90.a2m.gz, have 120324 columns in 509 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ornA/nostruct-align/1ornA.t2k-thin90.a2m.gz
# 1ornA.t2k-thin90.a2m with 331 sequences, total weight= 261.091 avg weight= 0.788795 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30087 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ornA/info/1ornA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1ornA/nostruct-align/1ornA.t2k-thin90.a2m.gz, have 120538 columns in 510 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pkhA/nostruct-align/1pkhA.t2k-thin90.a2m.gz
# 1pkhA.t2k-thin90.a2m with 150 sequences, total weight= 123.457 avg weight= 0.823045 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pkhA/info/1pkhA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pkhA/nostruct-align/1pkhA.t2k-thin90.a2m.gz, have 120720 columns in 511 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o5kA/nostruct-align/1o5kA.t2k-thin90.a2m.gz
# 1o5kA.t2k-thin90.a2m with 315 sequences, total weight= 192.858 avg weight= 0.612247 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.303 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o5kA/info/1o5kA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o5kA/nostruct-align/1o5kA.t2k-thin90.a2m.gz, have 121015 columns in 512 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xg0A/nostruct-align/1xg0A.t2k-thin90.a2m.gz
# 1xg0A.t2k-thin90.a2m with 7 sequences, total weight= 4.25443 avg weight= 0.607776 12 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xg0A/info/1xg0A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1xg0A/nostruct-align/1xg0A.t2k-thin90.a2m.gz, have 121091 columns in 513 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kqrA/nostruct-align/1kqrA.t2k-thin90.a2m.gz
# 1kqrA.t2k-thin90.a2m with 38 sequences, total weight= 6.60005 avg weight= 0.173686 24 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kqrA/info/1kqrA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kqrA/nostruct-align/1kqrA.t2k-thin90.a2m.gz, have 121251 columns in 514 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2b/2bjvA/nostruct-align/2bjvA.t2k-thin90.a2m.gz
# 2bjvA.t2k-thin90.a2m with 1549 sequences, total weight= 429.442 avg weight= 0.277238 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.318 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2b/2bjvA/info/2bjvA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/2b/2bjvA/nostruct-align/2bjvA.t2k-thin90.a2m.gz, have 121487 columns in 515 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xeoA/nostruct-align/1xeoA.t2k-thin90.a2m.gz
# 1xeoA.t2k-thin90.a2m with 310 sequences, total weight= 33.2581 avg weight= 0.107284 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xeoA/info/1xeoA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1xeoA/nostruct-align/1xeoA.t2k-thin90.a2m.gz, have 121652 columns in 516 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tif/nostruct-align/1tif.t2k-thin90.a2m.gz
# 1tif.t2k-thin90.a2m with 109 sequences, total weight= 8.41581 avg weight= 0.0772092 31 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tif/info/1tif.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tif/nostruct-align/1tif.t2k-thin90.a2m.gz, have 121728 columns in 517 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dqpA/nostruct-align/1dqpA.t2k-thin90.a2m.gz
# 1dqpA.t2k-thin90.a2m with 134 sequences, total weight= 37.6027 avg weight= 0.280617 33 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dqpA/info/1dqpA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dqpA/nostruct-align/1dqpA.t2k-thin90.a2m.gz, have 121958 columns in 518 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nn5A/nostruct-align/1nn5A.t2k-thin90.a2m.gz
# 1nn5A.t2k-thin90.a2m with 160 sequences, total weight= 160 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29342 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nn5A/info/1nn5A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nn5A/nostruct-align/1nn5A.t2k-thin90.a2m.gz, have 122162 columns in 519 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1z/1z2uA/nostruct-align/1z2uA.t2k-thin90.a2m.gz
# 1z2uA.t2k-thin90.a2m with 718 sequences, total weight= 112.095 avg weight= 0.156121 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30272 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1z/1z2uA/info/1z2uA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1z/1z2uA/nostruct-align/1z2uA.t2k-thin90.a2m.gz, have 122312 columns in 520 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ucrA/nostruct-align/1ucrA.t2k-thin90.a2m.gz
# 1ucrA.t2k-thin90.a2m with 10 sequences, total weight= 4.9536 avg weight= 0.49536 16 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ucrA/info/1ucrA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1ucrA/nostruct-align/1ucrA.t2k-thin90.a2m.gz, have 122386 columns in 521 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q7lB/nostruct-align/1q7lB.t2k-thin90.a2m.gz
# 1q7lB.t2k-thin90.a2m with 21 sequences, total weight= 5.43493 avg weight= 0.258806 21 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q7lB/info/1q7lB.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q7lB/nostruct-align/1q7lB.t2k-thin90.a2m.gz, have 122474 columns in 522 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s95A/nostruct-align/1s95A.t2k-thin90.a2m.gz
# 1s95A.t2k-thin90.a2m with 448 sequences, total weight= 142.42 avg weight= 0.317903 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30103 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s95A/info/1s95A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1s/1s95A/nostruct-align/1s95A.t2k-thin90.a2m.gz, have 122798 columns in 523 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2a/2a0b/nostruct-align/2a0b.t2k-thin90.a2m.gz
# 2a0b.t2k-thin90.a2m with 58 sequences, total weight= 58 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11921 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2a/2a0b/info/2a0b.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/2a/2a0b/nostruct-align/2a0b.t2k-thin90.a2m.gz, have 122916 columns in 524 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t2dA/nostruct-align/1t2dA.t2k-thin90.a2m.gz
# 1t2dA.t2k-thin90.a2m with 395 sequences, total weight= 83.9985 avg weight= 0.212654 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30166 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t2dA/info/1t2dA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t2dA/nostruct-align/1t2dA.t2k-thin90.a2m.gz, have 123231 columns in 525 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rg8A/nostruct-align/1rg8A.t2k-thin90.a2m.gz
# 1rg8A.t2k-thin90.a2m with 150 sequences, total weight= 38.5829 avg weight= 0.25722 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rg8A/info/1rg8A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rg8A/nostruct-align/1rg8A.t2k-thin90.a2m.gz, have 123372 columns in 526 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1guqA/nostruct-align/1guqA.t2k-thin90.a2m.gz
# 1guqA.t2k-thin90.a2m with 84 sequences, total weight= 39.9642 avg weight= 0.475764 39 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1guqA/info/1guqA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1guqA/nostruct-align/1guqA.t2k-thin90.a2m.gz, have 123719 columns in 527 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1go3F/nostruct-align/1go3F.t2k-thin90.a2m.gz
# 1go3F.t2k-thin90.a2m with 17 sequences, total weight= 13.4606 avg weight= 0.791799 21 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1go3F/info/1go3F.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1go3F/nostruct-align/1go3F.t2k-thin90.a2m.gz, have 123826 columns in 528 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2b/2blnA/nostruct-align/2blnA.t2k-thin90.a2m.gz
# 2blnA.t2k-thin90.a2m with 631 sequences, total weight= 530.675 avg weight= 0.841007 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30274 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2b/2blnA/info/2blnA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/2b/2blnA/nostruct-align/2blnA.t2k-thin90.a2m.gz, have 124124 columns in 529 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1ju3A/nostruct-align/1ju3A.t2k-thin90.a2m.gz
# 1ju3A.t2k-thin90.a2m with 97 sequences, total weight= 97 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04194 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1ju3A/info/1ju3A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1ju3A/nostruct-align/1ju3A.t2k-thin90.a2m.gz, have 124694 columns in 530 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rcqA/nostruct-align/1rcqA.t2k-thin90.a2m.gz
# 1rcqA.t2k-thin90.a2m with 194 sequences, total weight= 56.0567 avg weight= 0.288952 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rcqA/info/1rcqA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rcqA/nostruct-align/1rcqA.t2k-thin90.a2m.gz, have 125051 columns in 531 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q6oA/nostruct-align/1q6oA.t2k-thin90.a2m.gz
# 1q6oA.t2k-thin90.a2m with 81 sequences, total weight= 63.2933 avg weight= 0.781399 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q6oA/info/1q6oA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q6oA/nostruct-align/1q6oA.t2k-thin90.a2m.gz, have 125264 columns in 532 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pe9A/nostruct-align/1pe9A.t2k-thin90.a2m.gz
# 1pe9A.t2k-thin90.a2m with 142 sequences, total weight= 88.904 avg weight= 0.626085 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pe9A/info/1pe9A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pe9A/nostruct-align/1pe9A.t2k-thin90.a2m.gz, have 125625 columns in 533 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2a/2ayh/nostruct-align/2ayh.t2k-thin90.a2m.gz
# 2ayh.t2k-thin90.a2m with 182 sequences, total weight= 182 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22039 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2a/2ayh/info/2ayh.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/2a/2ayh/nostruct-align/2ayh.t2k-thin90.a2m.gz, have 125839 columns in 534 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qqqA/nostruct-align/1qqqA.t2k-thin90.a2m.gz
# 1qqqA.t2k-thin90.a2m with 160 sequences, total weight= 27.1208 avg weight= 0.169505 39 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qqqA/info/1qqqA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qqqA/nostruct-align/1qqqA.t2k-thin90.a2m.gz, have 126103 columns in 535 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ucdA/nostruct-align/1ucdA.t2k-thin90.a2m.gz
# 1ucdA.t2k-thin90.a2m with 365 sequences, total weight= 137.195 avg weight= 0.375876 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30267 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ucdA/info/1ucdA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1u/1ucdA/nostruct-align/1ucdA.t2k-thin90.a2m.gz, have 126293 columns in 536 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xqoA/nostruct-align/1xqoA.t2k-thin90.a2m.gz
# 1xqoA.t2k-thin90.a2m with 8 sequences, total weight= 6.09645 avg weight= 0.762057 16 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xqoA/info/1xqoA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1xqoA/nostruct-align/1xqoA.t2k-thin90.a2m.gz, have 126546 columns in 537 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w99A/nostruct-align/1w99A.t2k-thin90.a2m.gz
# 1w99A.t2k-thin90.a2m with 112 sequences, total weight= 112 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22262 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w99A/info/1w99A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1w99A/nostruct-align/1w99A.t2k-thin90.a2m.gz, have 127104 columns in 538 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o6sB/nostruct-align/1o6sB.t2k-thin90.a2m.gz
# 1o6sB.t2k-thin90.a2m with 1038 sequences, total weight= 1038 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18486 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o6sB/info/1o6sB.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o6sB/nostruct-align/1o6sB.t2k-thin90.a2m.gz, have 127208 columns in 539 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jigA/nostruct-align/1jigA.t2k-thin90.a2m.gz
# 1jigA.t2k-thin90.a2m with 171 sequences, total weight= 111.007 avg weight= 0.649166 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30094 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jigA/info/1jigA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jigA/nostruct-align/1jigA.t2k-thin90.a2m.gz, have 127354 columns in 540 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g8kA/nostruct-align/1g8kA.t2k-thin90.a2m.gz
# 1g8kA.t2k-thin90.a2m with 198 sequences, total weight= 198 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18721 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g8kA/info/1g8kA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1g8kA/nostruct-align/1g8kA.t2k-thin90.a2m.gz, have 128176 columns in 541 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qwyA/nostruct-align/1qwyA.t2k-thin90.a2m.gz
# 1qwyA.t2k-thin90.a2m with 448 sequences, total weight= 448 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09232 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qwyA/info/1qwyA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qwyA/nostruct-align/1qwyA.t2k-thin90.a2m.gz, have 128410 columns in 542 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r26A/nostruct-align/1r26A.t2k-thin90.a2m.gz
# 1r26A.t2k-thin90.a2m with 974 sequences, total weight= 974 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24575 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r26A/info/1r26A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r26A/nostruct-align/1r26A.t2k-thin90.a2m.gz, have 128523 columns in 543 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vioA/nostruct-align/1vioA.t2k-thin90.a2m.gz
# 1vioA.t2k-thin90.a2m with 399 sequences, total weight= 113.194 avg weight= 0.283695 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30428 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vioA/info/1vioA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vioA/nostruct-align/1vioA.t2k-thin90.a2m.gz, have 128753 columns in 544 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i0vA/nostruct-align/1i0vA.t2k-thin90.a2m.gz
# 1i0vA.t2k-thin90.a2m with 13 sequences, total weight= 3.71867 avg weight= 0.286052 16 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i0vA/info/1i0vA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i0vA/nostruct-align/1i0vA.t2k-thin90.a2m.gz, have 128857 columns in 545 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3b/3bamA/nostruct-align/3bamA.t2k-thin90.a2m.gz
# 3bamA.t2k-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.88126 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3b/3bamA/info/3bamA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/3b/3bamA/nostruct-align/3bamA.t2k-thin90.a2m.gz, have 129063 columns in 546 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iq4A/nostruct-align/1iq4A.t2k-thin90.a2m.gz
# 1iq4A.t2k-thin90.a2m with 182 sequences, total weight= 23.5567 avg weight= 0.129432 39 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iq4A/info/1iq4A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1iq4A/nostruct-align/1iq4A.t2k-thin90.a2m.gz, have 129242 columns in 547 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gyxA/nostruct-align/1gyxA.t2k-thin90.a2m.gz
# 1gyxA.t2k-thin90.a2m with 21 sequences, total weight= 10.5899 avg weight= 0.504281 21 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gyxA/info/1gyxA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gyxA/nostruct-align/1gyxA.t2k-thin90.a2m.gz, have 129318 columns in 548 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o9rA/nostruct-align/1o9rA.t2k-thin90.a2m.gz
# 1o9rA.t2k-thin90.a2m with 108 sequences, total weight= 108 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28499 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o9rA/info/1o9rA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o9rA/nostruct-align/1o9rA.t2k-thin90.a2m.gz, have 129480 columns in 549 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i60A/nostruct-align/1i60A.t2k-thin90.a2m.gz
# 1i60A.t2k-thin90.a2m with 228 sequences, total weight= 228 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.965386 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i60A/info/1i60A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i60A/nostruct-align/1i60A.t2k-thin90.a2m.gz, have 129758 columns in 550 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t1dA/nostruct-align/1t1dA.t2k-thin90.a2m.gz
# 1t1dA.t2k-thin90.a2m with 102 sequences, total weight= 33.4575 avg weight= 0.328015 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t1dA/info/1t1dA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t1dA/nostruct-align/1t1dA.t2k-thin90.a2m.gz, have 129858 columns in 551 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kkoA/nostruct-align/1kkoA.t2k-thin90.a2m.gz
# 1kkoA.t2k-thin90.a2m with 69 sequences, total weight= 49.1127 avg weight= 0.711778 37 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kkoA/info/1kkoA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kkoA/nostruct-align/1kkoA.t2k-thin90.a2m.gz, have 130269 columns in 552 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2b/2bhuA/nostruct-align/2bhuA.t2k-thin90.a2m.gz
# 2bhuA.t2k-thin90.a2m with 1042 sequences, total weight= 1042 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08597 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2b/2bhuA/info/2bhuA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/2b/2bhuA/nostruct-align/2bhuA.t2k-thin90.a2m.gz, have 130849 columns in 553 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sauA/nostruct-align/1sauA.t2k-thin90.a2m.gz
# 1sauA.t2k-thin90.a2m with 53 sequences, total weight= 14.3565 avg weight= 0.270877 33 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sauA/info/1sauA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sauA/nostruct-align/1sauA.t2k-thin90.a2m.gz, have 130963 columns in 554 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r4pA/nostruct-align/1r4pA.t2k-thin90.a2m.gz
# 1r4pA.t2k-thin90.a2m with 87 sequences, total weight= 69.7327 avg weight= 0.801525 45 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r4pA/info/1r4pA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r4pA/nostruct-align/1r4pA.t2k-thin90.a2m.gz, have 131244 columns in 555 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s1dA/nostruct-align/1s1dA.t2k-thin90.a2m.gz
# 1s1dA.t2k-thin90.a2m with 12 sequences, total weight= 5.50736 avg weight= 0.458947 20 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s1dA/info/1s1dA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1s/1s1dA/nostruct-align/1s1dA.t2k-thin90.a2m.gz, have 131561 columns in 556 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1y81A/nostruct-align/1y81A.t2k-thin90.a2m.gz
# 1y81A.t2k-thin90.a2m with 258 sequences, total weight= 49.7834 avg weight= 0.192959 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1y81A/info/1y81A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1y/1y81A/nostruct-align/1y81A.t2k-thin90.a2m.gz, have 131677 columns in 557 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gca/nostruct-align/1gca.t2k-thin90.a2m.gz
# 1gca.t2k-thin90.a2m with 345 sequences, total weight= 345 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07687 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gca/info/1gca.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gca/nostruct-align/1gca.t2k-thin90.a2m.gz, have 131986 columns in 558 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3e/3eipA/nostruct-align/3eipA.t2k-thin90.a2m.gz
# 3eipA.t2k-thin90.a2m with 6 sequences, total weight= 2.6921 avg weight= 0.448684 11 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3e/3eipA/info/3eipA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/3e/3eipA/nostruct-align/3eipA.t2k-thin90.a2m.gz, have 132070 columns in 559 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vlaA/nostruct-align/1vlaA.t2k-thin90.a2m.gz
# 1vlaA.t2k-thin90.a2m with 115 sequences, total weight= 115 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19013 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vlaA/info/1vlaA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vlaA/nostruct-align/1vlaA.t2k-thin90.a2m.gz, have 132214 columns in 560 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mfmA/nostruct-align/1mfmA.t2k-thin90.a2m.gz
# 1mfmA.t2k-thin90.a2m with 175 sequences, total weight= 21.8298 avg weight= 0.124742 40 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mfmA/info/1mfmA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mfmA/nostruct-align/1mfmA.t2k-thin90.a2m.gz, have 132367 columns in 561 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1ks9A/nostruct-align/1ks9A.t2k-thin90.a2m.gz
# 1ks9A.t2k-thin90.a2m with 149 sequences, total weight= 149 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17004 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1ks9A/info/1ks9A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1k/1ks9A/nostruct-align/1ks9A.t2k-thin90.a2m.gz, have 132658 columns in 562 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1whi/nostruct-align/1whi.t2k-thin90.a2m.gz
# 1whi.t2k-thin90.a2m with 179 sequences, total weight= 17.6002 avg weight= 0.0983252 37 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1whi/info/1whi.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1w/1whi/nostruct-align/1whi.t2k-thin90.a2m.gz, have 132780 columns in 563 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1ayl/nostruct-align/1ayl.t2k-thin90.a2m.gz
# 1ayl.t2k-thin90.a2m with 77 sequences, total weight= 22.9477 avg weight= 0.298022 34 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1ayl/info/1ayl.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1a/1ayl/nostruct-align/1ayl.t2k-thin90.a2m.gz, have 133312 columns in 564 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vns/nostruct-align/1vns.t2k-thin90.a2m.gz
# 1vns.t2k-thin90.a2m with 10 sequences, total weight= 10 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26786 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vns/info/1vns.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vns/nostruct-align/1vns.t2k-thin90.a2m.gz, have 133886 columns in 565 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q1fA/nostruct-align/1q1fA.t2k-thin90.a2m.gz
# 1q1fA.t2k-thin90.a2m with 603 sequences, total weight= 603 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24988 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q1fA/info/1q1fA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q1fA/nostruct-align/1q1fA.t2k-thin90.a2m.gz, have 134034 columns in 566 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/5n/5nul/nostruct-align/5nul.t2k-thin90.a2m.gz
# 5nul.t2k-thin90.a2m with 249 sequences, total weight= 249 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17639 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/5n/5nul/info/5nul.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/5n/5nul/nostruct-align/5nul.t2k-thin90.a2m.gz, have 134172 columns in 567 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fiuA/nostruct-align/1fiuA.t2k-thin90.a2m.gz
# 1fiuA.t2k-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19094 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fiuA/info/1fiuA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fiuA/nostruct-align/1fiuA.t2k-thin90.a2m.gz, have 134458 columns in 568 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pfvA/nostruct-align/1pfvA.t2k-thin90.a2m.gz
# 1pfvA.t2k-thin90.a2m with 864 sequences, total weight= 864 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20203 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pfvA/info/1pfvA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pfvA/nostruct-align/1pfvA.t2k-thin90.a2m.gz, have 135005 columns in 569 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1orc/nostruct-align/1orc.t2k-thin90.a2m.gz
# 1orc.t2k-thin90.a2m with 4 sequences, total weight= 3.31057 avg weight= 0.827642 10 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1orc/info/1orc.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1orc/nostruct-align/1orc.t2k-thin90.a2m.gz, have 135069 columns in 570 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mhnA/nostruct-align/1mhnA.t2k-thin90.a2m.gz
# 1mhnA.t2k-thin90.a2m with 58 sequences, total weight= 31.7503 avg weight= 0.547418 37 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mhnA/info/1mhnA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mhnA/nostruct-align/1mhnA.t2k-thin90.a2m.gz, have 135128 columns in 571 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1csh/nostruct-align/1csh.t2k-thin90.a2m.gz
# 1csh.t2k-thin90.a2m with 123 sequences, total weight= 34.441 avg weight= 0.280008 44 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1csh/info/1csh.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1c/1csh/nostruct-align/1csh.t2k-thin90.a2m.gz, have 135563 columns in 572 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t1jA/nostruct-align/1t1jA.t2k-thin90.a2m.gz
# 1t1jA.t2k-thin90.a2m with 2 sequences, total weight= 1.92975 avg weight= 0.964877 6 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t1jA/info/1t1jA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t1jA/nostruct-align/1t1jA.t2k-thin90.a2m.gz, have 135682 columns in 573 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rl0A/nostruct-align/1rl0A.t2k-thin90.a2m.gz
# 1rl0A.t2k-thin90.a2m with 85 sequences, total weight= 32.1548 avg weight= 0.378292 41 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rl0A/info/1rl0A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rl0A/nostruct-align/1rl0A.t2k-thin90.a2m.gz, have 135937 columns in 574 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d2nA/nostruct-align/1d2nA.t2k-thin90.a2m.gz
# 1d2nA.t2k-thin90.a2m with 499 sequences, total weight= 499 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25321 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d2nA/info/1d2nA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1d/1d2nA/nostruct-align/1d2nA.t2k-thin90.a2m.gz, have 136183 columns in 575 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e4cP/nostruct-align/1e4cP.t2k-thin90.a2m.gz
# 1e4cP.t2k-thin90.a2m with 202 sequences, total weight= 186.632 avg weight= 0.923919 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30031 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e4cP/info/1e4cP.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e4cP/nostruct-align/1e4cP.t2k-thin90.a2m.gz, have 136389 columns in 576 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ogqA/nostruct-align/1ogqA.t2k-thin90.a2m.gz
# 1ogqA.t2k-thin90.a2m with 2347 sequences, total weight= 2347 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03589 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ogqA/info/1ogqA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1ogqA/nostruct-align/1ogqA.t2k-thin90.a2m.gz, have 136702 columns in 577 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v6sA/nostruct-align/1v6sA.t2k-thin90.a2m.gz
# 1v6sA.t2k-thin90.a2m with 223 sequences, total weight= 14.3221 avg weight= 0.0642247 38 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v6sA/info/1v6sA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v6sA/nostruct-align/1v6sA.t2k-thin90.a2m.gz, have 137092 columns in 578 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1njhA/nostruct-align/1njhA.t2k-thin90.a2m.gz
# 1njhA.t2k-thin90.a2m with 6 sequences, total weight= 3.08793 avg weight= 0.514655 14 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1njhA/info/1njhA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1n/1njhA/nostruct-align/1njhA.t2k-thin90.a2m.gz, have 137200 columns in 579 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xfsA/nostruct-align/1xfsA.t2k-thin90.a2m.gz
# 1xfsA.t2k-thin90.a2m with 102 sequences, total weight= 102 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22408 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xfsA/info/1xfsA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1x/1xfsA/nostruct-align/1xfsA.t2k-thin90.a2m.gz, have 137354 columns in 580 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vr9A/nostruct-align/1vr9A.t2k-thin90.a2m.gz
# 1vr9A.t2k-thin90.a2m with 762 sequences, total weight= 762 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28357 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vr9A/info/1vr9A.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vr9A/nostruct-align/1vr9A.t2k-thin90.a2m.gz, have 137475 columns in 581 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sfxA/nostruct-align/1sfxA.t2k-thin90.a2m.gz
# 1sfxA.t2k-thin90.a2m with 207 sequences, total weight= 207 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09075 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sfxA/info/1sfxA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sfxA/nostruct-align/1sfxA.t2k-thin90.a2m.gz, have 137584 columns in 582 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vhsA/nostruct-align/1vhsA.t2k-thin90.a2m.gz
# 1vhsA.t2k-thin90.a2m with 976 sequences, total weight= 976 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.917532 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vhsA/info/1vhsA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vhsA/nostruct-align/1vhsA.t2k-thin90.a2m.gz, have 137749 columns in 583 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1muwA/nostruct-align/1muwA.t2k-thin90.a2m.gz
# 1muwA.t2k-thin90.a2m with 69 sequences, total weight= 31.2402 avg weight= 0.452756 31 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1muwA/info/1muwA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1m/1muwA/nostruct-align/1muwA.t2k-thin90.a2m.gz, have 138135 columns in 584 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rhcA/nostruct-align/1rhcA.t2k-thin90.a2m.gz
# 1rhcA.t2k-thin90.a2m with 857 sequences, total weight= 857 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02501 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rhcA/info/1rhcA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rhcA/nostruct-align/1rhcA.t2k-thin90.a2m.gz, have 138465 columns in 585 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1orvA/nostruct-align/1orvA.t2k-thin90.a2m.gz
# 1orvA.t2k-thin90.a2m with 249 sequences, total weight= 249 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.831695 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1orvA/info/1orvA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1o/1orvA/nostruct-align/1orvA.t2k-thin90.a2m.gz, have 139193 columns in 586 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vbiA/nostruct-align/1vbiA.t2k-thin90.a2m.gz
# 1vbiA.t2k-thin90.a2m with 113 sequences, total weight= 36.0361 avg weight= 0.318904 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vbiA/info/1vbiA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vbiA/nostruct-align/1vbiA.t2k-thin90.a2m.gz, have 139533 columns in 587 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1yiiA/nostruct-align/1yiiA.t2k-thin90.a2m.gz
# 1yiiA.t2k-thin90.a2m with 254 sequences, total weight= 63.4975 avg weight= 0.24999 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30031 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1yiiA/info/1yiiA.stride-mixed.CB-burial-12-7
# After reading /projects/compbio/experiments/models.97/pdb/1y/1yiiA/nostruct-align/1yiiA.t2k-thin90.a2m.gz, have 139849 columns in 588 chains
# command:CPU_time= 2280.88 sec, elapsed time= 2406.99 sec)
# command:# ReportNetQualityForCrossTrainTo quality-reports/dunbrack-30pc-1763-t2k-thin90-IDGaaH13-3-13-7-13-9-13-11-t2c3-CB_burial_12_7-from-empty.train ok.
# command:# Training Net with 5 estimation cycles.
Epoch: 1  2.79198 cross_bits=2.77607 objective=0.230083 new best
Epoch: 2  2.77714 cross_bits=2.77583 objective=0.231623 new best
Epoch: 3  2.7769 cross_bits=2.77563 objective=0.233459 new best
Epoch: 4  2.77669 cross_bits=2.77542 objective=0.235053 new best
Epoch: 5  2.77646 cross_bits=2.7752 objective=0.236374 new best
# Network initialization done
# command:# ReportNeuralNet networks/dunbrack-30pc-1763-t2k-thin90-IDGaaH13-3-13-7-13-9-13-11-t2c3-CB_burial_12_7-from-empty.net ok.
# Network initialization done
# Neural network printed.
# command:CPU_time= 2896.28 sec, elapsed time= 3026.45 sec)
# command:# Network initialization done
# command:Equilibrating dunbrack-30pc-1763-t2k-thin90-IDGaaH13-3-13-7-13-9-13-11-t2c3-CB_burial_12_7-from-empty.net
# command:# Training Net with 5 estimation cycles.
Epoch: 6  2.77605 cross_bits=2.77533 objective=0.254776 new best
Epoch: 7  2.77595 cross_bits=2.77514 objective=0.256333 new best
Epoch: 8  2.77571 cross_bits=2.77489 objective=0.257818 new best
Epoch: 9  2.77545 cross_bits=2.77462 objective=0.259237 new best
Epoch: 10  2.77516 cross_bits=2.77432 objective=0.261217 new best, reshuffling
# Network initialization done
# command:# ReportNeuralNet networks/dunbrack-30pc-1763-t2k-thin90-IDGaaH13-3-13-7-13-9-13-11-t2c3-CB_burial_12_7-from-empty.net ok.
# Network initialization done
# Neural network printed.
# command:CPU_time= 3554.6 sec, elapsed time= 3685.66 sec)
# command:# Network initialization done
# command:Equilibrating dunbrack-30pc-1763-t2k-thin90-IDGaaH13-3-13-7-13-9-13-11-t2c3-CB_burial_12_7-from-empty.net
# command:# Training Net with 5 estimation cycles.
Epoch: 11  2.77505 cross_bits=2.77419 objective=0.25802 worse network accepted, reshuffling
Epoch: 12  2.77478 cross_bits=2.77348 objective=0.256553 worse network accepted, reshuffling
Epoch: 13  2.77438 cross_bits=2.77318 objective=0.261452 new best
Epoch: 14  2.77403 cross_bits=2.77279 objective=0.263223 new best
Epoch: 15  2.7736 cross_bits=2.77233 objective=0.265086 new best
# Network initialization done
# command:# ReportNeuralNet networks/dunbrack-30pc-1763-t2k-thin90-IDGaaH13-3-13-7-13-9-13-11-t2c3-CB_burial_12_7-from-empty.net ok.
# Network initialization done
# Neural network printed.
# command:CPU_time= 4213.44 sec, elapsed time= 4346.48 sec)
# command:# Network initialization done
# command:Equilibrating dunbrack-30pc-1763-t2k-thin90-IDGaaH13-3-13-7-13-9-13-11-t2c3-CB_burial_12_7-from-empty.net
# command:# Training Net with 5 estimation cycles.
Epoch: 16  2.7734 cross_bits=2.77209 objective=0.266503 new best
Epoch: 17  2.77288 cross_bits=2.77154 objective=0.26834 new best
Epoch: 18  2.77227 cross_bits=2.77088 objective=0.269588 new best
Epoch: 19  2.77154 cross_bits=2.77007 objective=0.271317 new best
Epoch: 20  2.77064 cross_bits=2.76907 objective=0.273835 new best
# Network initialization done
# command:# ReportNeuralNet networks/dunbrack-30pc-1763-t2k-thin90-IDGaaH13-3-13-7-13-9-13-11-t2c3-CB_burial_12_7-from-empty.net ok.
# Network initialization done
# Neural network printed.
# command:CPU_time= 4872.18 sec, elapsed time= 5006.38 sec)
# command:# Network initialization done
# command:Equilibrating dunbrack-30pc-1763-t2k-thin90-IDGaaH13-3-13-7-13-9-13-11-t2c3-CB_burial_12_7-from-empty.net
# command:# Training Net with 50 estimation cycles.
Epoch: 21  2.76993 cross_bits=2.76875 objective=0.262162 worse network rejected, reshuffling
Epoch: 22  2.77008 cross_bits=2.76841 objective=0.27975 new best, reshuffling
Epoch: 23  2.76868 cross_bits=2.76683 objective=0.279427 worse network accepted, reshuffling
Epoch: 24  2.76675 cross_bits=2.76484 objective=0.285067 new best
Epoch: 25  2.7644 cross_bits=2.76199 objective=0.290479 new best, reshuffling
Epoch: 26  2.76107 cross_bits=2.75774 objective=0.304711 new best
Epoch: 27  2.7558 cross_bits=2.75128 objective=0.320277 new best
Epoch: 28  2.74771 cross_bits=2.74124 objective=0.335944 new best
Epoch: 29  2.73545 cross_bits=2.72645 objective=0.35001 new best
Epoch: 30  2.71833 cross_bits=2.70661 objective=0.368876 new best
Epoch: 31  2.69627 cross_bits=2.68141 objective=0.397306 new best, reshuffling
Epoch: 32  2.66946 cross_bits=2.65695 objective=0.421106 new best
Epoch: 33  2.63838 cross_bits=2.62657 objective=0.45523 new best
Epoch: 34  2.60575 cross_bits=2.59711 objective=0.494689 new best
Epoch: 35  2.57557 cross_bits=2.57095 objective=0.535226 new best
Epoch: 36  2.54955 cross_bits=2.54867 objective=0.570394 new best
Epoch: 37  2.52758 cross_bits=2.52976 objective=0.599621 new best
Epoch: 38  2.50899 cross_bits=2.51348 objective=0.626151 new best
Epoch: 39  2.49306 cross_bits=2.49922 objective=0.648784 new best, reshuffling
Epoch: 40  2.47995 cross_bits=2.45932 objective=0.705395 new best, reshuffling
Epoch: 41  2.46426 cross_bits=2.44476 objective=0.727804 new best, reshuffling
Epoch: 42  2.45611 cross_bits=2.4432 objective=0.728705 new best, reshuffling
Epoch: 43  2.44528 cross_bits=2.42321 objective=0.759961 new best
Epoch: 44  2.43616 cross_bits=2.41414 objective=0.773596 new best
Epoch: 45  2.4279 cross_bits=2.40593 objective=0.785703 new best
Epoch: 46  2.42038 cross_bits=2.3985 objective=0.79689 new best
Epoch: 47  2.4135 cross_bits=2.39177 objective=0.806046 new best
Epoch: 48  2.40721 cross_bits=2.38565 objective=0.815091 new best
Epoch: 49  2.40143 cross_bits=2.38008 objective=0.822811 new best
Epoch: 50  2.39611 cross_bits=2.37498 objective=0.830501 new best
Epoch: 51  2.39121 cross_bits=2.3703 objective=0.837961 new best
Epoch: 52  2.38667 cross_bits=2.36598 objective=0.844644 new best
Epoch: 53  2.38245 cross_bits=2.36199 objective=0.850986 new best
Epoch: 54  2.37853 cross_bits=2.35828 objective=0.85664 new best, reshuffling
Epoch: 55  2.37724 cross_bits=2.35432 objective=0.86161 new best
Epoch: 56  2.37389 cross_bits=2.35114 objective=0.86614 new best
Epoch: 57  2.37065 cross_bits=2.34815 objective=0.870586 new best
Epoch: 58  2.36759 cross_bits=2.34533 objective=0.874903 new best
Epoch: 59  2.3647 cross_bits=2.34268 objective=0.878815 new best, reshuffling
Epoch: 60  2.35774 cross_bits=2.34069 objective=0.883883 new best
Epoch: 61  2.3552 cross_bits=2.3383 objective=0.88767 new best
Epoch: 62  2.35273 cross_bits=2.33602 objective=0.891245 new best
Epoch: 63  2.35035 cross_bits=2.33384 objective=0.895282 new best
Epoch: 64  2.34806 cross_bits=2.33175 objective=0.898267 new best
Epoch: 65  2.34586 cross_bits=2.32974 objective=0.901392 new best
Epoch: 66  2.34373 cross_bits=2.3278 objective=0.903738 new best, reshuffling
Epoch: 67  2.3434 cross_bits=2.32754 objective=0.902278 worse network accepted, reshuffling
Epoch: 68  2.3408 cross_bits=2.33905 objective=0.890248 worse network accepted, reshuffling
Epoch: 69  2.34006 cross_bits=2.32892 objective=0.900161 improvement accepted
Epoch: 70  2.33819 cross_bits=2.32748 objective=0.901912 reset to old best (0.903738), reshuffling
# Network initialization done
# command:# ReportNeuralNet networks/dunbrack-30pc-1763-t2k-thin90-IDGaaH13-3-13-7-13-9-13-11-t2c3-CB_burial_12_7-from-empty.net ok.
# Network initialization done
# Neural network printed.
# command:CPU_time= 10699.8 sec, elapsed time= 10913.2 sec)
# command:# Network initialization done
# command:# Training Net with 50 estimation cycles.
Epoch: 71  2.34997 cross_bits=2.34071 objective=0.888043 worse network rejected, reshuffling
Epoch: 72  2.34514 cross_bits=2.38305 objective=0.829515 worse network rejected, reshuffling
Epoch: 73  2.34703 cross_bits=2.34246 objective=0.885151 worse network rejected, reshuffling
Epoch: 74  2.34709 cross_bits=2.34598 objective=0.874329 worse network rejected, reshuffling
Epoch: 75  2.34891 cross_bits=2.35004 objective=0.875649 worse network rejected, reshuffling
Epoch: 76  2.34846 cross_bits=2.3368 objective=0.888092 worse network rejected, reshuffling
Epoch: 77  2.34561 cross_bits=2.33166 objective=0.897161 worse network accepted, reshuffling
Epoch: 78  2.34448 cross_bits=2.33303 objective=0.895762 worse network accepted, reshuffling
Epoch: 79  2.34481 cross_bits=2.32859 objective=0.900443 new best, reshuffling
Epoch: 80  2.3444 cross_bits=2.32601 objective=0.906699 new best
Epoch: 81  2.34298 cross_bits=2.32461 objective=0.908781 new best, reshuffling
Epoch: 82  2.33968 cross_bits=2.325 objective=0.907169 worse network accepted, reshuffling
Epoch: 83  2.33887 cross_bits=2.34007 objective=0.882075 worse network rejected, reshuffling
Epoch: 84  2.33283 cross_bits=2.34058 objective=0.881188 worse network rejected, reshuffling
Epoch: 85  2.33598 cross_bits=2.3437 objective=0.885335 worse network rejected, reshuffling
Epoch: 86  2.33429 cross_bits=2.32993 objective=0.903025 worse network accepted, reshuffling
Epoch: 87  2.33327 cross_bits=2.36883 objective=0.838238 worse network rejected, reshuffling
Epoch: 88  2.3328 cross_bits=2.32106 objective=0.912469 new best
Epoch: 89  2.33146 cross_bits=2.3199 objective=0.914182 new best
Epoch: 90  2.33015 cross_bits=2.31874 objective=0.91585 new best
Epoch: 91  2.32887 cross_bits=2.31759 objective=0.91727 new best
Epoch: 92  2.3276 cross_bits=2.31646 objective=0.919003 new best
Epoch: 93  2.32635 cross_bits=2.31536 objective=0.920934 new best
Epoch: 94  2.32512 cross_bits=2.31428 objective=0.922516 new best
Epoch: 95  2.32391 cross_bits=2.31322 objective=0.923772 new best
Epoch: 96  2.32272 cross_bits=2.31218 objective=0.924924 new best
Epoch: 97  2.32155 cross_bits=2.31115 objective=0.92674 new best
Epoch: 98  2.3204 cross_bits=2.31014 objective=0.928301 new best, reshuffling
Epoch: 99  2.32233 cross_bits=2.30922 objective=0.929515 new best
Epoch: 100  2.32113 cross_bits=2.30826 objective=0.930446 new best
Epoch: 101  2.32001 cross_bits=2.3073 objective=0.931969 new best
Epoch: 102  2.3189 cross_bits=2.30635 objective=0.933291 new best
Epoch: 103  2.31781 cross_bits=2.30541 objective=0.934626 new best
Epoch: 104  2.31673 cross_bits=2.30447 objective=0.935852 new best
Epoch: 105  2.31566 cross_bits=2.30355 objective=0.937284 new best
Epoch: 106  2.3146 cross_bits=2.30263 objective=0.938747 new best
Epoch: 107  2.31356 cross_bits=2.30173 objective=0.940242 new best
Epoch: 108  2.31253 cross_bits=2.30083 objective=0.941711 new best
Epoch: 109  2.31151 cross_bits=2.29995 objective=0.943299 new best
Epoch: 110  2.3105 cross_bits=2.29907 objective=0.944847 new best
Epoch: 111  2.3095 cross_bits=2.29821 objective=0.946211 new best
Epoch: 112  2.30851 cross_bits=2.29735 objective=0.947659 new best
Epoch: 113  2.30754 cross_bits=2.29651 objective=0.949014 new best
Epoch: 114  2.30658 cross_bits=2.29568 objective=0.95042 new best
Epoch: 115  2.30562 cross_bits=2.29486 objective=0.95155 new best
Epoch: 116  2.30468 cross_bits=2.29404 objective=0.952946 new best
Epoch: 117  2.30376 cross_bits=2.29324 objective=0.954315 new best
Epoch: 118  2.30284 cross_bits=2.29245 objective=0.955545 new best, reshuffling
Epoch: 119  2.30095 cross_bits=2.2955 objective=0.949946 worse network accepted, reshuffling
Epoch: 120  2.30165 cross_bits=2.29021 objective=0.958597 new best
# Network initialization done
# command:# ReportNeuralNet networks/dunbrack-30pc-1763-t2k-thin90-IDGaaH13-3-13-7-13-9-13-11-t2c3-CB_burial_12_7-from-empty.net ok.
# Network initialization done
# Neural network printed.
# command:CPU_time= 16481.8 sec, elapsed time= 16701.1 sec)
# command:# ReportNetQualityForTestTo quality-reports/dunbrack-30pc-1763-t2k-thin90-IDGaaH13-3-13-7-13-9-13-11-t2c3-CB_burial_12_7-from-empty.120.test ok.
# command:# Testing net dunbrack-30pc-1763-t2k-thin90-IDGaaH13-3-13-7-13-9-13-11-t2c3-CB_burial_12_7-from-empty.net
# Network initialization done
# command:# Network initialization done
# command:Equilibrating dunbrack-30pc-1763-t2k-thin90-IDGaaH13-3-13-7-13-9-13-11-t2c3-CB_burial_12_7-from-empty.net
# command:# Training Net with 50 estimation cycles.
Epoch: 121  2.45525 cross_bits=2.38211 objective=0.834422 new best
Epoch: 122  2.38697 cross_bits=2.36788 objective=0.850569 new best
Epoch: 123  2.359 cross_bits=2.35159 objective=0.870806 new best
Epoch: 124  2.34487 cross_bits=2.34127 objective=0.884188 new best
Epoch: 125  2.3354 cross_bits=2.33341 objective=0.89422 new best
Epoch: 126  2.32813 cross_bits=2.32693 objective=0.90356 new best
Epoch: 127  2.32212 cross_bits=2.32134 objective=0.911205 new best
Epoch: 128  2.31694 cross_bits=2.31639 objective=0.918652 new best
Epoch: 129  2.31238 cross_bits=2.31196 objective=0.924517 new best
Epoch: 130  2.30827 cross_bits=2.30794 objective=0.930608 new best
Epoch: 131  2.30454 cross_bits=2.30425 objective=0.935505 new best
Epoch: 132  2.30112 cross_bits=2.30086 objective=0.940954 new best
Epoch: 133  2.29795 cross_bits=2.29769 objective=0.9451 new best
Epoch: 134  2.295 cross_bits=2.29475 objective=0.949659 new best
Epoch: 135  2.29224 cross_bits=2.292 objective=0.953114 new best
Epoch: 136  2.28963 cross_bits=2.2894 objective=0.957111 new best
Epoch: 137  2.28717 cross_bits=2.28694 objective=0.960359 new best
Epoch: 138  2.28483 cross_bits=2.28461 objective=0.96379 new best
Epoch: 139  2.2826 cross_bits=2.2824 objective=0.967025 new best
Epoch: 140  2.28047 cross_bits=2.28028 objective=0.969932 new best, reshuffling
Epoch: 141  2.2784 cross_bits=2.27286 objective=0.981421 new best
Epoch: 142  2.27624 cross_bits=2.27107 objective=0.98442 new best, reshuffling
Epoch: 143  2.26976 cross_bits=2.26206 objective=0.997391 new best
Epoch: 144  2.26795 cross_bits=2.26066 objective=0.999062 new best
Epoch: 145  2.26619 cross_bits=2.25923 objective=1.00149 new best
Epoch: 146  2.26448 cross_bits=2.25785 objective=1.00336 new best
Epoch: 147  2.26285 cross_bits=2.25653 objective=1.00566 new best
Epoch: 148  2.26127 cross_bits=2.25525 objective=1.00735 new best
Epoch: 149  2.25974 cross_bits=2.254 objective=1.00955 new best
Epoch: 150  2.25826 cross_bits=2.25278 objective=1.01117 new best
Epoch: 151  2.25683 cross_bits=2.25162 objective=1.01267 new best
Epoch: 152  2.25544 cross_bits=2.25049 objective=1.01416 new best
Epoch: 153  2.2541 cross_bits=2.24939 objective=1.01538 new best
Epoch: 154  2.25279 cross_bits=2.24833 objective=1.01682 new best
Epoch: 155  2.25152 cross_bits=2.2473 objective=1.01849 new best
Epoch: 156  2.25029 cross_bits=2.2463 objective=1.01998 new best
Epoch: 157  2.24909 cross_bits=2.24534 objective=1.02137 new best
Epoch: 158  2.24793 cross_bits=2.2444 objective=1.0228 new best
Epoch: 159  2.24679 cross_bits=2.2435 objective=1.02427 new best
Epoch: 160  2.24569 cross_bits=2.24262 objective=1.02549 new best
Epoch: 161  2.24461 cross_bits=2.24178 objective=1.02666 new best
Epoch: 162  2.24357 cross_bits=2.24096 objective=1.02813 new best
Epoch: 163  2.24254 cross_bits=2.24016 objective=1.02965 new best
Epoch: 164  2.24154 cross_bits=2.23938 objective=1.03104 new best
Epoch: 165  2.24057 cross_bits=2.23864 objective=1.03174 new best, reshuffling
Epoch: 166  2.24389 cross_bits=2.23996 objective=1.02847 worse network accepted, reshuffling
Epoch: 167  2.24522 cross_bits=2.2386 objective=1.03043 improvement accepted, reshuffling
Epoch: 168  2.23779 cross_bits=2.24168 objective=1.02765 worse network rejected, reshuffling
Epoch: 169  2.24057 cross_bits=2.26816 objective=0.987175 worse network rejected, reshuffling
Epoch: 170  2.23905 cross_bits=2.23494 objective=1.03836 new best
# Network initialization done
# command:# ReportNeuralNet networks/dunbrack-30pc-1763-t2k-thin90-IDGaaH13-3-13-7-13-9-13-11-t2c3-CB_burial_12_7-from-empty.net ok.
# Network initialization done
# Neural network printed.
# command:CPU_time= 22435.4 sec, elapsed time= 22661.3 sec)
# command:# Network initialization done
# command:# Training Net with 50 estimation cycles.
Epoch: 171  2.25829 cross_bits=2.25133 objective=1.01335 new best
Epoch: 172  2.25616 cross_bits=2.24919 objective=1.01636 new best
Epoch: 173  2.25455 cross_bits=2.24757 objective=1.01853 new best
Epoch: 174  2.25318 cross_bits=2.24621 objective=1.02039 new best
Epoch: 175  2.25195 cross_bits=2.24503 objective=1.02217 new best
Epoch: 176  2.25081 cross_bits=2.24396 objective=1.02397 new best
Epoch: 177  2.24973 cross_bits=2.243 objective=1.0256 new best
Epoch: 178  2.24872 cross_bits=2.24211 objective=1.02701 new best
Epoch: 179  2.24775 cross_bits=2.24128 objective=1.0281 new best
Epoch: 180  2.24683 cross_bits=2.2405 objective=1.02925 new best
Epoch: 181  2.24594 cross_bits=2.23976 objective=1.03027 new best
Epoch: 182  2.24508 cross_bits=2.23906 objective=1.03169 new best
Epoch: 183  2.24426 cross_bits=2.23839 objective=1.0328 new best
Epoch: 184  2.24346 cross_bits=2.23774 objective=1.03396 new best
Epoch: 185  2.24268 cross_bits=2.23713 objective=1.03476 new best
Epoch: 186  2.24193 cross_bits=2.23653 objective=1.03581 new best
Epoch: 187  2.24119 cross_bits=2.23595 objective=1.03651 new best
Epoch: 188  2.24047 cross_bits=2.23539 objective=1.03757 new best
Epoch: 189  2.23977 cross_bits=2.23485 objective=1.03843 new best
Epoch: 190  2.23908 cross_bits=2.23432 objective=1.03931 new best
Epoch: 191  2.23841 cross_bits=2.2338 objective=1.03984 new best
Epoch: 192  2.23775 cross_bits=2.23329 objective=1.04045 new best
Epoch: 193  2.23711 cross_bits=2.2328 objective=1.04116 new best
Epoch: 194  2.23647 cross_bits=2.23232 objective=1.04183 new best
Epoch: 195  2.23585 cross_bits=2.23185 objective=1.04247 new best, reshuffling
Epoch: 196  2.23067 cross_bits=2.26291 objective=0.999543 worse network rejected, reshuffling
Epoch: 197  2.23554 cross_bits=2.2284 objective=1.04623 new best
Epoch: 198  2.23478 cross_bits=2.22803 objective=1.04665 new best
Epoch: 199  2.23418 cross_bits=2.22763 objective=1.04709 new best, reshuffling
Epoch: 200  2.2321 cross_bits=2.22895 objective=1.0463 worse network accepted, reshuffling
Epoch: 201  2.22767 cross_bits=2.23798 objective=1.03197 worse network rejected, reshuffling
Epoch: 202  2.23214 cross_bits=2.23202 objective=1.0441 worse network accepted, reshuffling
Epoch: 203  2.23348 cross_bits=2.24935 objective=1.01357 worse network rejected, reshuffling
Epoch: 204  2.23135 cross_bits=2.22586 objective=1.04971 new best
Epoch: 205  2.23083 cross_bits=2.22569 objective=1.05047 new best
Epoch: 206  2.23033 cross_bits=2.22544 objective=1.05128 new best
Epoch: 207  2.22981 cross_bits=2.22516 objective=1.05176 new best
Epoch: 208  2.2293 cross_bits=2.22487 objective=1.05237 new best
Epoch: 209  2.2288 cross_bits=2.22458 objective=1.05267 new best
Epoch: 210  2.22831 cross_bits=2.22429 objective=1.05329 new best
Epoch: 211  2.22782 cross_bits=2.22399 objective=1.05344 new best
Epoch: 212  2.22734 cross_bits=2.2237 objective=1.05378 new best
Epoch: 213  2.22687 cross_bits=2.22342 objective=1.05413 new best
Epoch: 214  2.2264 cross_bits=2.22313 objective=1.05431 new best
Epoch: 215  2.22594 cross_bits=2.22285 objective=1.055 new best
Epoch: 216  2.22549 cross_bits=2.22258 objective=1.05552 new best
Epoch: 217  2.22504 cross_bits=2.22231 objective=1.05584 new best
Epoch: 218  2.2246 cross_bits=2.22204 objective=1.05606 new best
Epoch: 219  2.22416 cross_bits=2.22178 objective=1.05665 new best, reshuffling
Epoch: 220  2.22241 cross_bits=2.24769 objective=1.01717 reset to old best (1.05665), reshuffling
# Network initialization done
# command:# ReportNeuralNet networks/dunbrack-30pc-1763-t2k-thin90-IDGaaH13-3-13-7-13-9-13-11-t2c3-CB_burial_12_7-from-empty.net ok.
# Network initialization done
# Neural network printed.
# command:CPU_time= 28217.7 sec, elapsed time= 28454.8 sec)
# command:# ReportNetQualityForTestTo quality-reports/dunbrack-30pc-1763-t2k-thin90-IDGaaH13-3-13-7-13-9-13-11-t2c3-CB_burial_12_7-from-empty.220.test ok.
# command:# Testing net dunbrack-30pc-1763-t2k-thin90-IDGaaH13-3-13-7-13-9-13-11-t2c3-CB_burial_12_7-from-empty.net
# Network initialization done
# command:# Network initialization done
# command:Equilibrating dunbrack-30pc-1763-t2k-thin90-IDGaaH13-3-13-7-13-9-13-11-t2c3-CB_burial_12_7-from-empty.net
# command:# Training Net with 50 estimation cycles.
Epoch: 221  2.29831 cross_bits=2.27711 objective=0.976053 new best
Epoch: 222  2.26511 cross_bits=2.26395 objective=0.993987 new best
Epoch: 223  2.25521 cross_bits=2.2564 objective=1.00436 new best
Epoch: 224  2.24937 cross_bits=2.25151 objective=1.01227 new best
Epoch: 225  2.24535 cross_bits=2.24804 objective=1.01675 new best, reshuffling
Epoch: 226  2.24042 cross_bits=2.24846 objective=1.01377 worse network accepted, reshuffling
Epoch: 227  2.23991 cross_bits=2.24093 objective=1.02448 new best
Epoch: 228  2.23787 cross_bits=2.2392 objective=1.02765 new best
Epoch: 229  2.23618 cross_bits=2.2377 objective=1.0299 new best
Epoch: 230  2.23471 cross_bits=2.2364 objective=1.03205 new best
Epoch: 231  2.2334 cross_bits=2.23525 objective=1.0341 new best, reshuffling
Epoch: 232  2.2321 cross_bits=2.23199 objective=1.03924 new best
Epoch: 233  2.23105 cross_bits=2.23113 objective=1.04046 new best
Epoch: 234  2.23007 cross_bits=2.2303 objective=1.04162 new best
Epoch: 235  2.22916 cross_bits=2.22952 objective=1.04255 new best
Epoch: 236  2.22832 cross_bits=2.22879 objective=1.04378 new best
Epoch: 237  2.22752 cross_bits=2.2281 objective=1.04538 new best
Epoch: 238  2.22676 cross_bits=2.22746 objective=1.04649 new best
Epoch: 239  2.22605 cross_bits=2.22685 objective=1.04747 new best
Epoch: 240  2.22536 cross_bits=2.22628 objective=1.04853 new best, reshuffling
Epoch: 241  2.22322 cross_bits=2.23152 objective=1.04007 worse network accepted, reshuffling
Epoch: 242  2.22088 cross_bits=2.24005 objective=1.0312 worse network accepted, reshuffling
Epoch: 243  2.22272 cross_bits=2.22639 objective=1.04687 improvement accepted
Epoch: 244  2.22211 cross_bits=2.22604 objective=1.04735 improvement accepted
Epoch: 245  2.22156 cross_bits=2.22563 objective=1.04815 improvement accepted, reshuffling
Epoch: 246  2.22232 cross_bits=2.22356 objective=1.05256 new best
Epoch: 247  2.22184 cross_bits=2.22316 objective=1.05325 new best
Epoch: 248  2.22131 cross_bits=2.22274 objective=1.05369 new best
Epoch: 249  2.22079 cross_bits=2.22233 objective=1.05415 new best
Epoch: 250  2.22028 cross_bits=2.22194 objective=1.05514 new best
Epoch: 251  2.21978 cross_bits=2.22155 objective=1.0556 new best
Epoch: 252  2.21929 cross_bits=2.22118 objective=1.05608 new best
Epoch: 253  2.21881 cross_bits=2.22083 objective=1.05677 new best
Epoch: 254  2.21834 cross_bits=2.22048 objective=1.05746 new best
Epoch: 255  2.21788 cross_bits=2.22014 objective=1.05774 new best
Epoch: 256  2.21743 cross_bits=2.21982 objective=1.05837 new best
Epoch: 257  2.21699 cross_bits=2.2195 objective=1.05869 new best
Epoch: 258  2.21655 cross_bits=2.21919 objective=1.05913 new best
Epoch: 259  2.21612 cross_bits=2.21889 objective=1.05962 new best
Epoch: 260  2.2157 cross_bits=2.21859 objective=1.06012 new best
Epoch: 261  2.21528 cross_bits=2.21831 objective=1.06067 new best
Epoch: 262  2.21487 cross_bits=2.21803 objective=1.06069 new best
Epoch: 263  2.21447 cross_bits=2.21775 objective=1.06113 new best
Epoch: 264  2.21407 cross_bits=2.21749 objective=1.06151 new best, reshuffling
Epoch: 265  2.21278 cross_bits=2.23812 objective=1.02822 worse network rejected, reshuffling
Epoch: 266  2.21302 cross_bits=2.22456 objective=1.04951 worse network rejected, reshuffling
Epoch: 267  2.21125 cross_bits=2.22179 objective=1.05704 worse network rejected, reshuffling
Epoch: 268  2.21121 cross_bits=2.21696 objective=1.06224 new best
Epoch: 269  2.21079 cross_bits=2.21666 objective=1.06252 new best, reshuffling
Epoch: 270  2.21125 cross_bits=2.21813 objective=1.05965 reset to old best (1.06252), reshuffling
# Network initialization done
# command:# ReportNeuralNet networks/dunbrack-30pc-1763-t2k-thin90-IDGaaH13-3-13-7-13-9-13-11-t2c3-CB_burial_12_7-from-empty.net ok.
# Network initialization done
# Neural network printed.
# command:CPU_time= 34166.3 sec, elapsed time= 34409.2 sec)
# command:# Network initialization done
# command:# Training Net with 50 estimation cycles.
Epoch: 271  2.22287 cross_bits=2.24241 objective=1.02345 worse network accepted, reshuffling
Epoch: 272  2.22526 cross_bits=2.231 objective=1.04244 new best
Epoch: 273  2.22466 cross_bits=2.23056 objective=1.04347 new best
Epoch: 274  2.22408 cross_bits=2.23014 objective=1.04399 new best
Epoch: 275  2.22356 cross_bits=2.22974 objective=1.04453 new best
Epoch: 276  2.22308 cross_bits=2.22936 objective=1.04488 new best
Epoch: 277  2.22262 cross_bits=2.229 objective=1.04533 new best
Epoch: 278  2.22219 cross_bits=2.22865 objective=1.04575 new best
Epoch: 279  2.22176 cross_bits=2.2283 objective=1.04617 new best
Epoch: 280  2.22135 cross_bits=2.22797 objective=1.04664 new best
Epoch: 281  2.22095 cross_bits=2.22765 objective=1.04716 new best, reshuffling
Epoch: 282  2.22092 cross_bits=2.23075 objective=1.04083 worse network accepted, reshuffling
Epoch: 283  2.22013 cross_bits=2.22852 objective=1.04434 improvement accepted
Epoch: 284  2.22018 cross_bits=2.22832 objective=1.04483 improvement accepted, reshuffling
Epoch: 285  2.21807 cross_bits=2.22845 objective=1.04483 worse network accepted, reshuffling
Epoch: 286  2.21814 cross_bits=2.24637 objective=1.02129 worse network rejected, reshuffling
Epoch: 287  2.21866 cross_bits=2.22626 objective=1.04767 new best
Epoch: 288  2.21823 cross_bits=2.22598 objective=1.0479 new best
Epoch: 289  2.21786 cross_bits=2.22571 objective=1.0482 new best
Epoch: 290  2.2175 cross_bits=2.22545 objective=1.04878 new best
Epoch: 291  2.21715 cross_bits=2.22519 objective=1.04934 new best
Epoch: 292  2.2168 cross_bits=2.22494 objective=1.04991 new best
Epoch: 293  2.21646 cross_bits=2.2247 objective=1.0502 new best
Epoch: 294  2.21612 cross_bits=2.22446 objective=1.05039 new best
Epoch: 295  2.21578 cross_bits=2.22422 objective=1.05092 new best
Epoch: 296  2.21545 cross_bits=2.22398 objective=1.05147 new best
Epoch: 297  2.21512 cross_bits=2.22375 objective=1.05176 new best
Epoch: 298  2.2148 cross_bits=2.22352 objective=1.05216 new best
Epoch: 299  2.21448 cross_bits=2.2233 objective=1.05254 new best
Epoch: 300  2.21416 cross_bits=2.22308 objective=1.05289 new best
Epoch: 301  2.21384 cross_bits=2.22286 objective=1.05324 new best
Epoch: 302  2.21353 cross_bits=2.22264 objective=1.05375 new best, reshuffling
Epoch: 303  2.21171 cross_bits=2.222 objective=1.05536 new best
Epoch: 304  2.21143 cross_bits=2.22185 objective=1.05559 new best
Epoch: 305  2.21115 cross_bits=2.22165 objective=1.05568 new best
Epoch: 306  2.21086 cross_bits=2.22143 objective=1.05598 new best
Epoch: 307  2.21056 cross_bits=2.22121 objective=1.05641 new best
Epoch: 308  2.21027 cross_bits=2.221 objective=1.05702 new best
Epoch: 309  2.20998 cross_bits=2.22078 objective=1.0575 new best, reshuffling
Epoch: 310  2.21 cross_bits=2.22216 objective=1.05574 worse network accepted, reshuffling
Epoch: 311  2.20779 cross_bits=2.24434 objective=1.02685 worse network rejected, reshuffling
Epoch: 312  2.21193 cross_bits=2.22546 objective=1.04847 worse network rejected, reshuffling
Epoch: 313  2.21055 cross_bits=2.22464 objective=1.04922 worse network rejected, reshuffling
Epoch: 314  2.21067 cross_bits=2.22834 objective=1.0442 worse network rejected, reshuffling
Epoch: 315  2.20974 cross_bits=2.22992 objective=1.04105 worse network rejected, reshuffling
Epoch: 316  2.20872 cross_bits=2.23436 objective=1.03432 worse network rejected, reshuffling
Epoch: 317  2.20962 cross_bits=2.22228 objective=1.05471 worse network accepted, reshuffling
Epoch: 318  2.21116 cross_bits=2.22478 objective=1.04992 worse network rejected, reshuffling
Epoch: 319  2.20884 cross_bits=2.22096 objective=1.05678 improvement accepted, reshuffling
Epoch: 320  2.2105 cross_bits=2.2196 objective=1.05859 new best
# Network initialization done
# command:# ReportNeuralNet networks/dunbrack-30pc-1763-t2k-thin90-IDGaaH13-3-13-7-13-9-13-11-t2c3-CB_burial_12_7-from-empty.net ok.
# Network initialization done
# Neural network printed.
# command:CPU_time= 39947.4 sec, elapsed time= 40210.6 sec)
# command:# ReportNetQualityForTestTo quality-reports/dunbrack-30pc-1763-t2k-thin90-IDGaaH13-3-13-7-13-9-13-11-t2c3-CB_burial_12_7-from-empty.test ok.
# command:# Testing net dunbrack-30pc-1763-t2k-thin90-IDGaaH13-3-13-7-13-9-13-11-t2c3-CB_burial_12_7-from-empty.net
# Network initialization done
# command:# ReportTrainByChain given with no output file.
# command:# ReportQvsPhatTo given with no output file.
# command:# ReportUnitUsageTo given with no output file.
# command:CPU_time= 40074.5 sec, elapsed time= 40341 sec)
# command: