From casp@predictioncenter.org Tue May 11 16:28:19 2010 X-Spam-Status: No, score=-100.0 required=3.0 tests=USER_IN_WHITELIST autolearn=no version=3.2.5 To: karplus@soe.ucsc.edu Subject: Submission ERROR for farmer@bmecluster.soe.ucsc.edu (SAM-T08-server, T0531, TS, model: 2) - SERVER From: Prediction Center Reply-To: casp@predictioncenter.org Content-type: text/plain Date: Tue, 11 May 2010 16:28:19 -0700 (PDT) YOUR SUBMISSION CANNOT BE ACCEPTED THE FORMAT OF YOUR PREDICTION IS NOT CORRECT Please check the format at: http://predictioncenter.org/casp9/index.cgi?page=format ########################################################## OUTPUT FROM THE VERIFICATION SERVER BELOW # Reading prediction format TS PFRMAT TS TARGET T0531 AUTHOR SAM-T08-server REMARK 6 REMARK 6 T0531 model 2 Tue May 11 16:28:07 2010 # Reading MODEL 2 PARENT N/A # Reading prediction format TS (DONE) # Checking the TS prediction MODEL 2 # Checking the TS prediction MODEL 2 (DONE) # MODEL index: 2 # Target name: T0531 # Total number of residues in target: 65 # Total number of residues in model: 65 # Total number of atoms in model: 503 # Number of atoms with 1.0 occupancy: 504 # Number of fragments in model: 1 # Number of METHOD records: 7 # No errors in format. Checking prediction geometry ... Checking prediction geometry ... # Warning! CA-CA clash (1.66A) between residues GLY3 and GLU19 # Warning! Severe CA-CA clash (1.66A) between residues GLY3 and GLU19 # Warning! CA-CA clash (2.46A) between residues MET4 and GLU19 # Warning! CA-CA clash (2.95A) between residues MET4 and GLU20 # Warning! CA-CA clash (2.74A) between residues LYS5 and GLU20 # Warning! CA-CA clash (1.14A) between residues LYS5 and CYS21 # Warning! Severe CA-CA clash (1.14A) between residues LYS5 and CYS21 # Warning! CA-CA clash (3.08A) between residues GLU6 and CYS21 # Warning! CA-CA clash (3.10A) between residues GLU6 and ARG51 # Warning! CA-CA clash (2.74A) between residues PHE7 and PHE27 # Warning! CA-CA clash (3.18A) between residues PHE7 and LYS50 # Warning! CA-CA clash (0.69A) between residues PHE7 and ARG51 # Warning! Severe CA-CA clash (0.69A) between residues PHE7 and ARG51 # Warning! CA-CA clash (2.66A) between residues PRO8 and GLU53 # Warning! CA-CA clash (2.28A) between residues CYS9 and SER49 # Warning! CA-CA clash (3.02A) between residues CYS9 and LYS55 # Warning! CA-CA clash (0.82A) between residues TRP10 and LYS55 # Warning! Severe CA-CA clash (0.82A) between residues TRP10 and LYS55 # Warning! CA-CA clash (3.08A) between residues TRP10 and SER56 # Warning! CA-CA clash (1.28A) between residues GLU13 and CYS46 # Warning! Severe CA-CA clash (1.28A) between residues GLU13 and CYS46 # Warning! CA-CA clash (2.92A) between residues GLU13 and CYS57 # Warning! CA-CA clash (2.71A) between residues GLU14 and CYS46 # Warning! CA-CA clash (2.79A) between residues PHE15 and SER47 # Warning! CA-CA clash (1.79A) between residues PHE15 and SER48 # Warning! Severe CA-CA clash (1.79A) between residues PHE15 and SER48 # Warning! CA-CA clash (2.87A) between residues VAL16 and SER48 # Warning! CA-CA clash (2.75A) between residues PHE27 and ARG51 # ERROR! Too many steric clashes in the prediction. It can not be accepted. You might consider correction and resubmission of the prediction before the target deadline. # Checking prediction geometry (DONE) # Number of Warnings: 0 # Number of Errors: 1 Case number is: 082c60b0487a12cef4d27165032a4339 From casp@predictioncenter.org Thu May 13 18:35:23 2010 X-Spam-Status: No, score=-100.0 required=3.0 tests=USER_IN_WHITELIST autolearn=no version=3.2.5 To: karplus@soe.ucsc.edu Subject: Submission ERROR for farmer@soe.ucsc.edu (SAM-T02-server, T0538, AL, model: 2) - SERVER From: Prediction Center Reply-To: casp@predictioncenter.org Content-type: text/plain Date: Thu, 13 May 2010 18:35:23 -0700 (PDT) YOUR SUBMISSION CANNOT BE ACCEPTED THE FORMAT OF YOUR PREDICTION IS NOT CORRECT Please check the format at: http://predictioncenter.org/casp9/index.cgi?page=format ########################################################## OUTPUT FROM THE VERIFICATION SERVER BELOW # Reading prediction format AL PFRMAT AL TARGET T0538 AUTHOR SAM-T02-server # Reading MODEL 2 PARENT 3aetB # Reading prediction format AL (DONE) # Converting alignments into a 3D structure # ERROR! Check PARENT record and AL format. # Converting alignments into a 3D structure (DONE) # Checking the AL prediction MODEL 2 # ERROR! Check the number 0 of residues in the model. (In TARGET: 54) # ERROR! The number of predicted atoms in the model: 0 # Number of errors = 3. # Number of Warnings: 0 # Number of Errors: 3 Case number is: ff115ad0fab776c097f6fc71e4a9b741 From casp@predictioncenter.org Thu May 13 18:35:24 2010 X-Spam-Status: No, score=-100.0 required=3.0 tests=USER_IN_WHITELIST autolearn=no version=3.2.5 To: karplus@soe.ucsc.edu Subject: Submission ERROR for farmer@soe.ucsc.edu (SAM-T02-server, T0538, AL, model: 3) - SERVER From: Prediction Center Reply-To: casp@predictioncenter.org Content-type: text/plain Date: Thu, 13 May 2010 18:35:24 -0700 (PDT) YOUR SUBMISSION CANNOT BE ACCEPTED THE FORMAT OF YOUR PREDICTION IS NOT CORRECT Please check the format at: http://predictioncenter.org/casp9/index.cgi?page=format ########################################################## OUTPUT FROM THE VERIFICATION SERVER BELOW # Reading prediction format AL PFRMAT AL TARGET T0538 AUTHOR SAM-T02-server # Reading MODEL 3 PARENT 3aeuB # Reading prediction format AL (DONE) # Converting alignments into a 3D structure # ERROR! Check PARENT record and AL format. # Converting alignments into a 3D structure (DONE) # Checking the AL prediction MODEL 3 # ERROR! Check the number 0 of residues in the model. (In TARGET: 54) # ERROR! The number of predicted atoms in the model: 0 # Number of errors = 3. # Number of Warnings: 0 # Number of Errors: 3 Case number is: ff115ad0fab776c097f6fc71e4a9b741 From casp@predictioncenter.org Thu May 13 18:35:24 2010 X-Spam-Status: No, score=-100.0 required=3.0 tests=USER_IN_WHITELIST autolearn=no version=3.2.5 To: karplus@soe.ucsc.edu Subject: Submission ERROR for farmer@soe.ucsc.edu (SAM-T02-server, T0538, AL, model: 4) - SERVER From: Prediction Center Reply-To: casp@predictioncenter.org Content-type: text/plain Date: Thu, 13 May 2010 18:35:24 -0700 (PDT) YOUR SUBMISSION CANNOT BE ACCEPTED THE FORMAT OF YOUR PREDICTION IS NOT CORRECT Please check the format at: http://predictioncenter.org/casp9/index.cgi?page=format ########################################################## OUTPUT FROM THE VERIFICATION SERVER BELOW # Reading prediction format AL PFRMAT AL TARGET T0538 AUTHOR SAM-T02-server # Reading MODEL 4 PARENT 3aekB # Reading prediction format AL (DONE) # Converting alignments into a 3D structure # ERROR! Check PARENT record and AL format. # Converting alignments into a 3D structure (DONE) # Checking the AL prediction MODEL 4 # ERROR! Check the number 0 of residues in the model. (In TARGET: 54) # ERROR! The number of predicted atoms in the model: 0 # Number of errors = 3. # Number of Warnings: 0 # Number of Errors: 3 Case number is: ff115ad0fab776c097f6fc71e4a9b741 From casp@predictioncenter.org Tue May 18 10:45:13 2010 X-Spam-Status: No, score=-100.0 required=3.0 tests=USER_IN_WHITELIST autolearn=no version=3.2.5 To: karplus@soe.ucsc.edu Subject: Submission ERROR for farmer@soe.ucsc.edu (SAM-T02-server, T0544, AL, model: 5) - SERVER From: Prediction Center Reply-To: casp@predictioncenter.org Content-type: text/plain Date: Tue, 18 May 2010 10:45:13 -0700 (PDT) YOUR SUBMISSION CANNOT BE ACCEPTED THE FORMAT OF YOUR PREDICTION IS NOT CORRECT Please check the format at: http://predictioncenter.org/casp9/index.cgi?page=format ########################################################## OUTPUT FROM THE VERIFICATION SERVER BELOW # Reading prediction format AL PFRMAT AL TARGET T0544 AUTHOR SAM-T02-server # Reading MODEL 5 PARENT 1ebvA # Reading prediction format AL (DONE) # Converting alignments into a 3D structure # ERROR! Check PARENT record and AL format. # Converting alignments into a 3D structure (DONE) # Checking the AL prediction MODEL 5 # ERROR! Check the number 0 of residues in the model. (In TARGET: 135) # ERROR! The number of predicted atoms in the model: 0 # Number of errors = 3. # Number of Warnings: 0 # Number of Errors: 3 Case number is: 2f0b42568cb3bab821ddfa52552f501c From casp@predictioncenter.org Thu May 20 18:02:52 2010 X-Spam-Status: No, score=-98.8 required=3.0 tests=AWL,RCVD_IN_BL_SPAMCOP_NET, USER_IN_WHITELIST autolearn=no version=3.2.5 To: karplus@soe.ucsc.edu Subject: Submission ERROR for farmer@bmecluster.soe.ucsc.edu (SAM-T08-server, T0551, TS, model: 2) - SERVER From: Prediction Center Reply-To: casp@predictioncenter.org Content-type: text/plain Date: Thu, 20 May 2010 18:02:52 -0700 (PDT) YOUR SUBMISSION CANNOT BE ACCEPTED THE FORMAT OF YOUR PREDICTION IS NOT CORRECT Please check the format at: http://predictioncenter.org/casp9/index.cgi?page=format ########################################################## OUTPUT FROM THE VERIFICATION SERVER BELOW # Reading prediction format TS PFRMAT TS TARGET T0551 AUTHOR SAM-T08-server REMARK 6 REMARK 6 T0551 model 2 Thu May 20 18:02:48 2010 # Reading MODEL 2 PARENT N/A # Reading prediction format TS (DONE) # Checking the TS prediction MODEL 2 # Checking the TS prediction MODEL 2 (DONE) # MODEL index: 2 # Target name: T0551 # Total number of residues in target: 74 # Total number of residues in model: 74 # Total number of atoms in model: 596 # Number of atoms with 1.0 occupancy: 597 # Number of fragments in model: 1 # Number of METHOD records: 7 # No errors in format. Checking prediction geometry ... Checking prediction geometry ... # Warning! CA-CA clash (0.01A) between residues GLU10 and GLU13 # Warning! Severe CA-CA clash (0.01A) between residues GLU10 and GLU13 # Warning! CA-CA clash (2.33A) between residues ILE11 and HIS14 # Warning! Too big distance ( 6.65A) between residues GLU12 and GLU13 # Warning! CA-CA clash (3.04A) between residues GLU12 and HIS14 # Warning! CA-CA clash (2.85A) between residues LEU16 and THR17 # Warning! CA-CA clash (0.02A) between residues GLU22 and LYS23 # Warning! Severe CA-CA clash (0.02A) between residues GLU22 and LYS23 # Warning! CA-CA clash (3.47A) between residues GLU28 and GLU63 # Warning! Too big distance ( 5.81A) between residues SER33 and PHE34 # Warning! CA-CA clash (0.86A) between residues LYS40 and PHE64 # Warning! Severe CA-CA clash (0.86A) between residues LYS40 and PHE64 # Warning! CA-CA clash (3.48A) between residues PHE41 and SER60 # Warning! CA-CA clash (3.07A) between residues PHE41 and PHE64 # Warning! CA-CA clash (2.33A) between residues ASP42 and SER60 # Warning! CA-CA clash (3.46A) between residues ASP42 and GLU63 # Warning! CA-CA clash (1.98A) between residues ASP49 and THR58 # Warning! CA-CA clash (3.28A) between residues ASP49 and LEU59 # Warning! CA-CA clash (1.58A) between residues HIS50 and ILE57 # Warning! Severe CA-CA clash (1.58A) between residues HIS50 and ILE57 # Warning! CA-CA clash (3.07A) between residues HIS50 and THR58 # ERROR! Too many steric clashes in the prediction. It can not be accepted. You might consider correction and resubmission of the prediction before the target deadline. # Checking prediction geometry (DONE) # Number of Warnings: 0 # Number of Errors: 1 Case number is: de9a1ce2b5c5e059172b58dfbe9bf2d6 From casp@predictioncenter.org Fri May 21 21:06:21 2010 X-Spam-Status: No, score=-99.9 required=3.0 tests=AWL,USER_IN_WHITELIST autolearn=no version=3.2.5 To: karplus@soe.ucsc.edu Subject: Submission ERROR for farmer@bmecluster.soe.ucsc.edu (SAM-T08-server, T0554, TS, model: 2) - SERVER From: Prediction Center Reply-To: casp@predictioncenter.org Content-type: text/plain Date: Fri, 21 May 2010 21:06:21 -0700 (PDT) YOUR SUBMISSION CANNOT BE ACCEPTED THE FORMAT OF YOUR PREDICTION IS NOT CORRECT Please check the format at: http://predictioncenter.org/casp9/index.cgi?page=format ########################################################## OUTPUT FROM THE VERIFICATION SERVER BELOW # Reading prediction format TS PFRMAT TS TARGET T0554 AUTHOR SAM-T08-server REMARK 6 REMARK 6 T0554 model 2 Fri May 21 21:06:08 2010 # Reading MODEL 2 PARENT N/A # Reading prediction format TS (DONE) # Checking the TS prediction MODEL 2 # Checking the TS prediction MODEL 2 (DONE) # MODEL index: 2 # Target name: T0554 # Total number of residues in target: 135 # Total number of residues in model: 135 # Total number of atoms in model: 1118 # Number of atoms with 1.0 occupancy: 1119 # Number of fragments in model: 1 # Number of METHOD records: 7 # No errors in format. Checking prediction geometry ... Checking prediction geometry ... # Warning! CA-CA clash (3.18A) between residues VAL25 and ASP113 # Warning! CA-CA clash (2.24A) between residues LEU26 and ASP111 # Warning! CA-CA clash (2.53A) between residues LEU26 and ILE112 # Warning! CA-CA clash (3.48A) between residues LEU26 and ASP113 # Warning! CA-CA clash (0.01A) between residues TYR30 and LYS48 # Warning! Severe CA-CA clash (0.01A) between residues TYR30 and LYS48 # Warning! CA-CA clash (0.01A) between residues VAL31 and ILE49 # Warning! Severe CA-CA clash (0.01A) between residues VAL31 and ILE49 # Warning! CA-CA clash (0.02A) between residues MET32 and THR50 # Warning! Severe CA-CA clash (0.02A) between residues MET32 and THR50 # Warning! CA-CA clash (0.01A) between residues ALA33 and VAL51 # Warning! Severe CA-CA clash (0.01A) between residues ALA33 and VAL51 # Warning! CA-CA clash (2.51A) between residues SER34 and ARG52 # Warning! CA-CA clash (2.72A) between residues SER34 and VAL55 # Warning! CA-CA clash (3.43A) between residues GLU35 and ARG52 # Warning! CA-CA clash (2.98A) between residues LEU37 and ARG52 # Warning! Too big distance (20.57A) between residues GLY47 and LYS48 # Warning! CA-CA clash (2.97A) between residues PHE54 and PHE125 # Warning! CA-CA clash (3.40A) between residues ARG56 and TYR121 # Warning! CA-CA clash (1.53A) between residues ARG56 and THR122 # Warning! Severe CA-CA clash (1.53A) between residues ARG56 and THR122 # Warning! CA-CA clash (2.17A) between residues ALA57 and SER124 # Warning! CA-CA clash (3.06A) between residues ALA57 and PHE125 # Warning! CA-CA clash (2.95A) between residues VAL58 and ASN123 # Warning! CA-CA clash (3.12A) between residues VAL58 and SER124 # Warning! CA-CA clash (3.42A) between residues VAL58 and PHE125 # Warning! CA-CA clash (0.02A) between residues ALA59 and LEU69 # Warning! Severe CA-CA clash (0.02A) between residues ALA59 and LEU69 # Warning! CA-CA clash (1.71A) between residues ALA59 and ASN123 # Warning! Severe CA-CA clash (1.71A) between residues ALA59 and ASN123 # Warning! CA-CA clash (0.52A) between residues LYS60 and TYR70 # Warning! Severe CA-CA clash (0.52A) between residues LYS60 and TYR70 # Warning! CA-CA clash (2.95A) between residues LYS60 and GLU120 # Warning! CA-CA clash (2.97A) between residues LYS60 and ASN123 # Warning! CA-CA clash (0.84A) between residues SER61 and GLY71 # Warning! Severe CA-CA clash (0.84A) between residues SER61 and GLY71 # Warning! CA-CA clash (0.41A) between residues GLU62 and ASN72 # Warning! Severe CA-CA clash (0.41A) between residues GLU62 and ASN72 # Warning! CA-CA clash (3.26A) between residues LEU63 and PHE73 # Warning! CA-CA clash (3.25A) between residues LEU63 and ARG88 # Warning! Too big distance (14.61A) between residues PHE68 and LEU69 # Warning! CA-CA clash (1.70A) between residues LEU69 and ASN123 # Warning! Severe CA-CA clash (1.70A) between residues LEU69 and ASN123 # Warning! CA-CA clash (2.69A) between residues TYR70 and GLU120 # Warning! CA-CA clash (2.81A) between residues TYR70 and ASN123 # Warning! CA-CA clash (0.01A) between residues PHE73 and ARG88 # Warning! Severe CA-CA clash (0.01A) between residues PHE73 and ARG88 # Warning! CA-CA clash (1.35A) between residues GLN74 and ALA89 # Warning! Severe CA-CA clash (1.35A) between residues GLN74 and ALA89 # Warning! Too big distance (21.55A) between residues GLY87 and ARG88 # Warning! CA-CA clash (3.02A) between residues LEU102 and GLY126 # Warning! CA-CA clash (1.34A) between residues TYR103 and GLY126 # Warning! Severe CA-CA clash (1.34A) between residues TYR103 and GLY126 # Warning! CA-CA clash (3.28A) between residues GLU104 and ASP127 # Warning! CA-CA clash (2.54A) between residues GLU106 and ASP127 # Warning! CA-CA clash (1.56A) between residues PHE108 and TRP128 # Warning! Severe CA-CA clash (1.56A) between residues PHE108 and TRP128 # Warning! CA-CA clash (3.01A) between residues ILE116 and TYR121 # Warning! Too big distance (14.54A) between residues PHE125 and GLY126 # ERROR! Too many steric clashes in the prediction. It can not be accepted. You might consider correction and resubmission of the prediction before the target deadline. # Checking prediction geometry (DONE) # Number of Warnings: 0 # Number of Errors: 1 Case number is: 6ea1d7041994e5dcfed8b120a759faa4 From casp@predictioncenter.org Wed May 26 22:36:17 2010 X-Spam-Status: No, score=-99.9 required=3.0 tests=AWL,USER_IN_WHITELIST autolearn=no version=3.2.5 To: karplus@soe.ucsc.edu Subject: Submission ERROR for farmer@bmecluster.soe.ucsc.edu (SAM-T08-server, T0562, TS, model: 2) - SERVER From: Prediction Center Reply-To: casp@predictioncenter.org Content-type: text/plain Date: Wed, 26 May 2010 22:36:17 -0700 (PDT) YOUR SUBMISSION CANNOT BE ACCEPTED THE FORMAT OF YOUR PREDICTION IS NOT CORRECT Please check the format at: http://predictioncenter.org/casp9/index.cgi?page=format ########################################################## OUTPUT FROM THE VERIFICATION SERVER BELOW # Reading prediction format TS PFRMAT TS TARGET T0562 AUTHOR SAM-T08-server REMARK 6 REMARK 6 T0562 model 2 Wed May 26 22:35:58 2010 # Reading MODEL 2 PARENT N/A # Reading prediction format TS (DONE) # Checking the TS prediction MODEL 2 # Checking the TS prediction MODEL 2 (DONE) # MODEL index: 2 # Target name: T0562 # Total number of residues in target: 123 # Total number of residues in model: 123 # Total number of atoms in model: 968 # Number of atoms with 1.0 occupancy: 969 # Number of fragments in model: 1 # Number of METHOD records: 7 # No errors in format. Checking prediction geometry ... Checking prediction geometry ... # Warning! CA-CA clash (2.55A) between residues MET1 and LYS109 # Warning! CA-CA clash (3.35A) between residues GLY4 and SER101 # Warning! CA-CA clash (3.31A) between residues THR5 and SER101 # Warning! CA-CA clash (2.40A) between residues TYR6 and ILE100 # Warning! CA-CA clash (3.34A) between residues ALA8 and VAL75 # Warning! CA-CA clash (3.34A) between residues GLU9 and TYR78 # Warning! Too big distance (13.97A) between residues SER16 and GLY17 # Warning! CA-CA clash (2.37A) between residues ILE24 and ALA103 # Warning! CA-CA clash (1.02A) between residues GLU25 and GLY102 # Warning! Severe CA-CA clash (1.02A) between residues GLU25 and GLY102 # Warning! CA-CA clash (3.22A) between residues VAL26 and GLY102 # Warning! CA-CA clash (2.71A) between residues ASP35 and ARG52 # Warning! CA-CA clash (1.57A) between residues ASP35 and ASN53 # Warning! Severe CA-CA clash (1.57A) between residues ASP35 and ASN53 # Warning! CA-CA clash (3.33A) between residues TRP36 and ASP48 # Warning! CA-CA clash (0.01A) between residues ALA38 and ILE39 # Warning! Severe CA-CA clash (0.01A) between residues ALA38 and ILE39 # Warning! CA-CA clash (0.01A) between residues GLY43 and GLY54 # Warning! Severe CA-CA clash (0.01A) between residues GLY43 and GLY54 # Warning! CA-CA clash (2.54A) between residues GLY44 and GLY55 # Warning! CA-CA clash (2.01A) between residues ASP45 and TYR56 # Warning! CA-CA clash (2.71A) between residues ASP45 and LYS57 # Warning! CA-CA clash (1.81A) between residues ASP46 and LYS57 # Warning! Severe CA-CA clash (1.81A) between residues ASP46 and LYS57 # Warning! CA-CA clash (2.28A) between residues LYS47 and MET58 # Warning! CA-CA clash (2.65A) between residues ASP48 and MET58 # Warning! CA-CA clash (1.55A) between residues LEU50 and VAL59 # Warning! Severe CA-CA clash (1.55A) between residues LEU50 and VAL59 # Warning! Too big distance (14.99A) between residues ASN53 and GLY54 # Warning! CA-CA clash (2.27A) between residues PRO85 and LYS106 # Warning! CA-CA clash (3.30A) between residues ILE88 and LYS108 # Warning! CA-CA clash (2.90A) between residues ILE88 and LYS109 # Warning! CA-CA clash (1.80A) between residues THR97 and VAL107 # Warning! Severe CA-CA clash (1.80A) between residues THR97 and VAL107 # Warning! CA-CA clash (3.07A) between residues ASP98 and LYS106 # Warning! CA-CA clash (2.70A) between residues ASP98 and VAL107 # Warning! CA-CA clash (2.04A) between residues ALA99 and PHE110 # Warning! CA-CA clash (2.84A) between residues THR104 and LEU113 # Warning! CA-CA clash (2.42A) between residues THR104 and ALA114 # Warning! Too big distance (16.09A) between residues ILE105 and LYS106 # Warning! CA-CA clash (2.28A) between residues ILE105 and ALA117 # ERROR! Too many steric clashes in the prediction. It can not be accepted. You might consider correction and resubmission of the prediction before the target deadline. # Checking prediction geometry (DONE) # Number of Warnings: 0 # Number of Errors: 1 Case number is: 4889fc8d8d4aff95f3daed1e3d42d320 From casp@predictioncenter.org Wed May 26 22:42:37 2010 X-Spam-Status: No, score=-99.9 required=3.0 tests=AWL,USER_IN_WHITELIST autolearn=no version=3.2.5 To: karplus@soe.ucsc.edu Subject: Submission ERROR for farmer@bmecluster.soe.ucsc.edu (SAM-T08-server, T0561, TS, model: 2) - SERVER From: Prediction Center Reply-To: casp@predictioncenter.org Content-type: text/plain Date: Wed, 26 May 2010 22:42:37 -0700 (PDT) YOUR SUBMISSION CANNOT BE ACCEPTED THE FORMAT OF YOUR PREDICTION IS NOT CORRECT Please check the format at: http://predictioncenter.org/casp9/index.cgi?page=format ########################################################## OUTPUT FROM THE VERIFICATION SERVER BELOW # Reading prediction format TS PFRMAT TS TARGET T0561 AUTHOR SAM-T08-server REMARK 6 REMARK 6 T0561 model 2 Wed May 26 22:42:25 2010 # Reading MODEL 2 PARENT N/A # Reading prediction format TS (DONE) # Checking the TS prediction MODEL 2 # Checking the TS prediction MODEL 2 (DONE) # MODEL index: 2 # Target name: T0561 # Total number of residues in target: 161 # Total number of residues in model: 161 # Total number of atoms in model: 1335 # Number of atoms with 1.0 occupancy: 1336 # Number of fragments in model: 1 # Number of METHOD records: 7 # No errors in format. Checking prediction geometry ... Checking prediction geometry ... # Warning! CA-CA clash (2.91A) between residues MET23 and GLN90 # Warning! CA-CA clash (1.28A) between residues TRP24 and GLN90 # Warning! Severe CA-CA clash (1.28A) between residues TRP24 and GLN90 # Warning! CA-CA clash (2.20A) between residues GLN26 and ALA91 # Warning! CA-CA clash (2.12A) between residues ALA27 and ALA91 # Warning! CA-CA clash (2.72A) between residues ALA27 and PHE92 # Warning! CA-CA clash (2.38A) between residues ARG28 and PHE92 # Warning! CA-CA clash (2.90A) between residues ARG28 and MET95 # Warning! CA-CA clash (0.02A) between residues LEU32 and TRP39 # Warning! Severe CA-CA clash (0.02A) between residues LEU32 and TRP39 # Warning! CA-CA clash (2.32A) between residues LEU32 and PRO161 # Warning! CA-CA clash (0.41A) between residues GLU33 and ALA40 # Warning! Severe CA-CA clash (0.41A) between residues GLU33 and ALA40 # Warning! CA-CA clash (3.25A) between residues GLU33 and MET160 # Warning! CA-CA clash (3.31A) between residues GLU33 and PRO161 # Warning! CA-CA clash (0.21A) between residues LEU34 and HIS41 # Warning! Severe CA-CA clash (0.21A) between residues LEU34 and HIS41 # Warning! CA-CA clash (0.77A) between residues VAL35 and MET42 # Warning! Severe CA-CA clash (0.77A) between residues VAL35 and MET42 # Warning! CA-CA clash (3.16A) between residues VAL35 and LEU43 # Warning! CA-CA clash (1.01A) between residues GLY36 and LEU43 # Warning! Severe CA-CA clash (1.01A) between residues GLY36 and LEU43 # Warning! CA-CA clash (0.79A) between residues LYS37 and ALA44 # Warning! Severe CA-CA clash (0.79A) between residues LYS37 and ALA44 # Warning! Too big distance ( 9.96A) between residues GLU38 and TRP39 # Warning! CA-CA clash (3.09A) between residues GLU38 and ALA44 # Warning! CA-CA clash (0.99A) between residues GLU38 and LEU45 # Warning! Severe CA-CA clash (0.99A) between residues GLU38 and LEU45 # Warning! CA-CA clash (2.33A) between residues TRP39 and PRO161 # Warning! CA-CA clash (3.00A) between residues ALA40 and MET160 # Warning! CA-CA clash (3.13A) between residues ALA40 and PRO161 # Warning! CA-CA clash (0.02A) between residues ASP51 and GLU59 # Warning! Severe CA-CA clash (0.02A) between residues ASP51 and GLU59 # Warning! CA-CA clash (0.73A) between residues PHE52 and MET60 # Warning! Severe CA-CA clash (0.73A) between residues PHE52 and MET60 # Warning! CA-CA clash (3.47A) between residues LEU53 and MET60 # Warning! CA-CA clash (2.01A) between residues LEU53 and ASN61 # Warning! CA-CA clash (1.99A) between residues TRP54 and ASN61 # Warning! CA-CA clash (0.55A) between residues LYS55 and SER62 # Warning! Severe CA-CA clash (0.55A) between residues LYS55 and SER62 # Warning! CA-CA clash (2.46A) between residues GLN57 and ASP66 # Warning! Too big distance (13.64A) between residues SER58 and GLU59 # Warning! CA-CA clash (3.12A) between residues VAL70 and GLU89 # Warning! CA-CA clash (0.01A) between residues ARG117 and LEU123 # Warning! Severe CA-CA clash (0.01A) between residues ARG117 and LEU123 # Warning! CA-CA clash (0.53A) between residues LYS118 and LYS124 # Warning! Severe CA-CA clash (0.53A) between residues LYS118 and LYS124 # Warning! CA-CA clash (3.29A) between residues LYS118 and ASP125 # Warning! CA-CA clash (3.27A) between residues LYS118 and PHE134 # Warning! CA-CA clash (1.23A) between residues LEU119 and ASP125 # Warning! Severe CA-CA clash (1.23A) between residues LEU119 and ASP125 # Warning! CA-CA clash (1.23A) between residues LEU119 and PHE134 # Warning! Severe CA-CA clash (1.23A) between residues LEU119 and PHE134 # Warning! CA-CA clash (1.30A) between residues ASN120 and LYS135 # Warning! Severe CA-CA clash (1.30A) between residues ASN120 and LYS135 # Warning! Too big distance ( 9.64A) between residues LYS122 and LEU123 # Warning! CA-CA clash (0.02A) between residues ASP125 and PHE134 # Warning! Severe CA-CA clash (0.02A) between residues ASP125 and PHE134 # Warning! CA-CA clash (2.66A) between residues PHE126 and LYS135 # Warning! Too big distance (15.67A) between residues TYR133 and PHE134 # ERROR! Too many steric clashes in the prediction. It can not be accepted. You might consider correction and resubmission of the prediction before the target deadline. # Checking prediction geometry (DONE) # Number of Warnings: 0 # Number of Errors: 1 Case number is: bd0f6277af016e2d9b86b4c085d856ee From casp@predictioncenter.org Sat May 29 00:00:33 2010 X-Spam-Status: No, score=-99.9 required=3.0 tests=AWL,USER_IN_WHITELIST autolearn=no version=3.2.5 To: karplus@soe.ucsc.edu Subject: Submission ERROR for farmer@bmecluster.soe.ucsc.edu (SAM-T08-server, T0564, TS, model: 2) - SERVER From: Prediction Center Reply-To: casp@predictioncenter.org Content-type: text/plain Date: Sat, 29 May 2010 00:00:33 -0700 (PDT) YOUR SUBMISSION CANNOT BE ACCEPTED THE FORMAT OF YOUR PREDICTION IS NOT CORRECT Please check the format at: http://predictioncenter.org/casp9/index.cgi?page=format ########################################################## OUTPUT FROM THE VERIFICATION SERVER BELOW # Reading prediction format TS PFRMAT TS TARGET T0564 AUTHOR SAM-T08-server REMARK 6 REMARK 6 T0564 model 2 Sat May 29 00:00:21 2010 # Reading MODEL 2 PARENT N/A # Reading prediction format TS (DONE) # Checking the TS prediction MODEL 2 # Checking the TS prediction MODEL 2 (DONE) # MODEL index: 2 # Target name: T0564 # Total number of residues in target: 89 # Total number of residues in model: 89 # Total number of atoms in model: 705 # Number of atoms with 1.0 occupancy: 706 # Number of fragments in model: 1 # Number of METHOD records: 7 # No errors in format. Checking prediction geometry ... Checking prediction geometry ... # Warning! CA-CA clash (0.01A) between residues ASN20 and THR34 # Warning! Severe CA-CA clash (0.01A) between residues ASN20 and THR34 # Warning! CA-CA clash (0.02A) between residues ARG22 and GLY33 # Warning! Severe CA-CA clash (0.02A) between residues ARG22 and GLY33 # Warning! Too big distance ( 7.65A) between residues ALA32 and GLY33 # Warning! Too big distance ( 5.06A) between residues GLY33 and THR34 # Warning! Too big distance (10.14A) between residues GLU50 and LYS51 # Warning! CA-CA clash (2.98A) between residues GLU50 and GLU89 # Warning! CA-CA clash (0.05A) between residues ARG54 and THR70 # Warning! Severe CA-CA clash (0.05A) between residues ARG54 and THR70 # Warning! CA-CA clash (0.03A) between residues LEU55 and LEU71 # Warning! Severe CA-CA clash (0.03A) between residues LEU55 and LEU71 # Warning! Too big distance ( 6.77A) between residues GLN56 and ALA57 # Warning! CA-CA clash (0.02A) between residues GLN56 and SER72 # Warning! Severe CA-CA clash (0.02A) between residues GLN56 and SER72 # Warning! CA-CA clash (0.02A) between residues ALA57 and LYS74 # Warning! Severe CA-CA clash (0.02A) between residues ALA57 and LYS74 # Warning! CA-CA clash (1.57A) between residues GLN58 and GLY75 # Warning! Severe CA-CA clash (1.57A) between residues GLN58 and GLY75 # Warning! CA-CA clash (2.40A) between residues GLN59 and GLY75 # Warning! CA-CA clash (3.16A) between residues GLN59 and THR76 # Warning! CA-CA clash (2.68A) between residues TYR60 and THR76 # Warning! CA-CA clash (2.76A) between residues HIS61 and THR76 # Warning! CA-CA clash (0.02A) between residues THR64 and ARG77 # Warning! Severe CA-CA clash (0.02A) between residues THR64 and ARG77 # Warning! CA-CA clash (0.43A) between residues VAL65 and PHE78 # Warning! Severe CA-CA clash (0.43A) between residues VAL65 and PHE78 # Warning! CA-CA clash (2.78A) between residues GLY66 and VAL79 # Warning! CA-CA clash (3.21A) between residues GLY66 and GLY80 # Warning! CA-CA clash (3.17A) between residues ASP67 and PHE81 # Warning! CA-CA clash (3.32A) between residues GLN68 and GLY80 # Warning! Too big distance ( 4.63A) between residues GLY69 and THR70 # Warning! CA-CA clash (2.45A) between residues GLY69 and GLY80 # Warning! Too big distance (12.37A) between residues THR76 and ARG77 # ERROR! Too many steric clashes in the prediction. It can not be accepted. You might consider correction and resubmission of the prediction before the target deadline. # Checking prediction geometry (DONE) # Number of Warnings: 0 # Number of Errors: 1 Case number is: f0fd6e27b505d010ef8d98c8626384b2 From casp@predictioncenter.org Thu Jun 3 04:55:07 2010 X-Spam-Status: No, score=-99.9 required=3.0 tests=AWL,USER_IN_WHITELIST autolearn=no version=3.2.5 To: karplus@soe.ucsc.edu Subject: Submission ERROR for farmer@bmecluster.soe.ucsc.edu (SAM-T08-server, T0571, TS, model: 2) - SERVER From: Prediction Center Reply-To: casp@predictioncenter.org Content-type: text/plain Date: Thu, 3 Jun 2010 04:55:07 -0700 (PDT) YOUR SUBMISSION CANNOT BE ACCEPTED THE FORMAT OF YOUR PREDICTION IS NOT CORRECT Please check the format at: http://predictioncenter.org/casp9/index.cgi?page=format ########################################################## OUTPUT FROM THE VERIFICATION SERVER BELOW # Reading prediction format TS PFRMAT TS TARGET T0571 AUTHOR SAM-T08-server REMARK 6 REMARK 6 T0571 model 2 Thu Jun 3 04:54:54 2010 # Reading MODEL 2 PARENT N/A # Reading prediction format TS (DONE) # Checking the TS prediction MODEL 2 # Checking the TS prediction MODEL 2 (DONE) # MODEL index: 2 # Target name: T0571 # Total number of residues in target: 344 # Total number of residues in model: 344 # Total number of atoms in model: 2702 # Number of atoms with 1.0 occupancy: 2703 # Number of fragments in model: 1 # Number of METHOD records: 7 # No errors in format. Checking prediction geometry ... Checking prediction geometry ... # Warning! CA-CA clash (1.09A) between residues ILE8 and GLU171 # Warning! Severe CA-CA clash (1.09A) between residues ILE8 and GLU171 # Warning! CA-CA clash (3.28A) between residues GLY9 and VAL169 # Warning! CA-CA clash (0.60A) between residues GLY9 and VAL170 # Warning! Severe CA-CA clash (0.60A) between residues GLY9 and VAL170 # Warning! CA-CA clash (3.24A) between residues LEU12 and VAL169 # Warning! CA-CA clash (3.43A) between residues SER22 and GLN165 # Warning! CA-CA clash (3.28A) between residues SER23 and LEU164 # Warning! CA-CA clash (2.07A) between residues SER23 and GLN165 # Warning! CA-CA clash (2.98A) between residues ASP24 and LEU164 # Warning! CA-CA clash (2.85A) between residues ASP24 and GLN165 # Warning! CA-CA clash (1.99A) between residues ASN25 and LYS167 # Warning! CA-CA clash (2.83A) between residues GLU26 and PRO168 # Warning! CA-CA clash (2.88A) between residues GLU26 and VAL169 # Warning! CA-CA clash (2.57A) between residues PHE27 and PRO168 # Warning! CA-CA clash (2.78A) between residues THR34 and LYS300 # Warning! CA-CA clash (2.78A) between residues TYR36 and ALA304 # Warning! CA-CA clash (3.07A) between residues PHE37 and ILE305 # Warning! CA-CA clash (3.05A) between residues PHE37 and TYR306 # Warning! CA-CA clash (1.61A) between residues ALA38 and THR314 # Warning! Severe CA-CA clash (1.61A) between residues ALA38 and THR314 # Warning! CA-CA clash (0.01A) between residues TYR41 and LEU43 # Warning! Severe CA-CA clash (0.01A) between residues TYR41 and LEU43 # Warning! CA-CA clash (2.56A) between residues GLY42 and ARG44 # Warning! CA-CA clash (2.57A) between residues GLY42 and VAL54 # Warning! CA-CA clash (3.16A) between residues GLY42 and GLY201 # Warning! CA-CA clash (0.01A) between residues ARG44 and VAL54 # Warning! Severe CA-CA clash (0.01A) between residues ARG44 and VAL54 # Warning! CA-CA clash (3.37A) between residues THR45 and ASP55 # Warning! CA-CA clash (2.39A) between residues THR45 and TYR203 # Warning! CA-CA clash (3.38A) between residues ILE46 and VAL261 # Warning! CA-CA clash (1.53A) between residues GLU47 and VAL261 # Warning! Severe CA-CA clash (1.53A) between residues GLU47 and VAL261 # Warning! CA-CA clash (3.20A) between residues GLU47 and ARG262 # Warning! CA-CA clash (1.26A) between residues LEU48 and ARG262 # Warning! Severe CA-CA clash (1.26A) between residues LEU48 and ARG262 # Warning! CA-CA clash (2.18A) between residues LEU48 and ILE318 # Warning! CA-CA clash (3.48A) between residues LEU48 and GLN319 # Warning! CA-CA clash (2.08A) between residues GLY49 and ASN317 # Warning! CA-CA clash (2.13A) between residues GLY49 and ILE318 # Warning! Too big distance (16.17A) between residues PHE53 and VAL54 # Warning! CA-CA clash (2.17A) between residues ASP55 and GLU202 # Warning! CA-CA clash (2.08A) between residues ASP55 and TYR203 # Warning! CA-CA clash (0.01A) between residues HIS62 and LYS63 # Warning! Severe CA-CA clash (0.01A) between residues HIS62 and LYS63 # Warning! CA-CA clash (3.21A) between residues VAL65 and ASP308 # Warning! CA-CA clash (2.84A) between residues ILE66 and ASP308 # Warning! CA-CA clash (2.55A) between residues ILE66 and TYR309 # Warning! CA-CA clash (3.41A) between residues LYS67 and TYR309 # Warning! CA-CA clash (3.42A) between residues LYS67 and ASN316 # Warning! CA-CA clash (2.36A) between residues ALA68 and VAL311 # Warning! CA-CA clash (3.49A) between residues ALA69 and VAL311 # Warning! CA-CA clash (3.34A) between residues ALA69 and LEU313 # Warning! CA-CA clash (3.13A) between residues GLY72 and GLY299 # Warning! CA-CA clash (0.01A) between residues GLY73 and TYR74 # Warning! Severe CA-CA clash (0.01A) between residues GLY73 and TYR74 # Warning! CA-CA clash (3.38A) between residues ASN83 and SER109 # Warning! CA-CA clash (2.23A) between residues PHE84 and ALA108 # Warning! CA-CA clash (1.61A) between residues PHE84 and SER109 # Warning! Severe CA-CA clash (1.61A) between residues PHE84 and SER109 # Warning! CA-CA clash (3.26A) between residues LYS85 and ALA108 # Warning! CA-CA clash (3.38A) between residues ASP87 and THR112 # Warning! CA-CA clash (2.27A) between residues LEU90 and ILE150 # Warning! CA-CA clash (2.95A) between residues LEU94 and PRO102 # Warning! CA-CA clash (3.23A) between residues TYR95 and GLN101 # Warning! CA-CA clash (2.31A) between residues ASP98 and PHE137 # Warning! CA-CA clash (0.01A) between residues PRO107 and SER115 # Warning! Severe CA-CA clash (0.01A) between residues PRO107 and SER115 # Warning! CA-CA clash (3.17A) between residues SER109 and MET154 # Warning! CA-CA clash (2.10A) between residues TYR110 and LEU153 # Warning! Too big distance (12.64A) between residues ALA114 and SER115 # Warning! CA-CA clash (2.98A) between residues ILE125 and ASN312 # Warning! CA-CA clash (3.49A) between residues MET126 and VAL311 # Warning! CA-CA clash (1.22A) between residues MET126 and ASN312 # Warning! Severe CA-CA clash (1.22A) between residues MET126 and ASN312 # Warning! CA-CA clash (3.13A) between residues ALA127 and THR310 # Warning! CA-CA clash (3.44A) between residues ALA127 and VAL311 # Warning! CA-CA clash (3.28A) between residues GLY128 and TYR309 # Warning! CA-CA clash (2.44A) between residues GLY128 and THR310 # Warning! CA-CA clash (3.41A) between residues VAL129 and TYR309 # Warning! CA-CA clash (0.01A) between residues ASP135 and ALA139 # Warning! Severe CA-CA clash (0.01A) between residues ASP135 and ALA139 # Warning! CA-CA clash (1.94A) between residues ASP136 and ASP140 # Warning! Too big distance ( 5.71A) between residues PHE138 and ALA139 # Warning! CA-CA clash (3.13A) between residues SER143 and HIS200 # Warning! CA-CA clash (2.65A) between residues GLU146 and ASP256 # Warning! CA-CA clash (0.01A) between residues TYR148 and VAL149 # Warning! Severe CA-CA clash (0.01A) between residues TYR148 and VAL149 # Warning! Too big distance ( 5.98A) between residues TRP181 and SER182 # Warning! CA-CA clash (1.34A) between residues LEU184 and ASN303 # Warning! Severe CA-CA clash (1.34A) between residues LEU184 and ASN303 # Warning! CA-CA clash (3.02A) between residues PRO185 and GLN186 # Warning! CA-CA clash (3.48A) between residues PRO185 and ASN303 # Warning! CA-CA clash (3.33A) between residues PRO185 and ALA304 # Warning! CA-CA clash (2.81A) between residues GLN186 and ALA304 # Warning! CA-CA clash (3.46A) between residues ALA192 and LEU204 # Warning! CA-CA clash (3.44A) between residues LYS194 and ILE257 # Warning! CA-CA clash (2.98A) between residues VAL196 and ARG329 # Warning! CA-CA clash (3.23A) between residues ASN197 and ARG329 # Warning! Too big distance (24.89A) between residues HIS200 and GLY201 # Warning! Too big distance (14.47A) between residues ALA211 and THR212 # Warning! CA-CA clash (2.48A) between residues ASP251 and ASP324 # Warning! CA-CA clash (3.26A) between residues ARG262 and ILE318 # Warning! CA-CA clash (3.05A) between residues LEU263 and GLN319 # Warning! CA-CA clash (2.81A) between residues SER264 and GLN319 # Warning! CA-CA clash (3.04A) between residues HIS274 and ALA321 # Warning! CA-CA clash (2.73A) between residues SER275 and ALA321 # Warning! CA-CA clash (2.61A) between residues SER275 and THR322 # Warning! CA-CA clash (2.72A) between residues GLY276 and THR322 # Warning! CA-CA clash (3.15A) between residues VAL280 and ALA321 # Warning! CA-CA clash (0.01A) between residues LYS294 and GLY298 # Warning! Severe CA-CA clash (0.01A) between residues LYS294 and GLY298 # Warning! Too big distance ( 8.13A) between residues LEU297 and GLY298 # Warning! CA-CA clash (0.01A) between residues ASP301 and ARG302 # Warning! Severe CA-CA clash (0.01A) between residues ASP301 and ARG302 # Warning! Too big distance ( 6.95A) between residues ASN312 and LEU313 # Warning! CA-CA clash (3.40A) between residues LEU328 and VAL333 # Warning! CA-CA clash (2.81A) between residues LYS337 and LYS344 # ERROR! Too many steric clashes in the prediction. It can not be accepted. You might consider correction and resubmission of the prediction before the target deadline. # Checking prediction geometry (DONE) # Number of Warnings: 0 # Number of Errors: 1 Case number is: df2fa4b0ed020ff1df63ced398c0ba02 From casp@predictioncenter.org Thu Jun 3 21:57:39 2010 X-Spam-Status: No, score=-99.9 required=3.0 tests=AWL,USER_IN_WHITELIST autolearn=no version=3.2.5 To: karplus@soe.ucsc.edu Subject: Submission ERROR for farmer@bmecluster.soe.ucsc.edu (SAM-T08-server, T0574, TS, model: 2) - SERVER From: Prediction Center Reply-To: casp@predictioncenter.org Content-type: text/plain Date: Thu, 3 Jun 2010 21:57:39 -0700 (PDT) YOUR SUBMISSION CANNOT BE ACCEPTED THE FORMAT OF YOUR PREDICTION IS NOT CORRECT Please check the format at: http://predictioncenter.org/casp9/index.cgi?page=format ########################################################## OUTPUT FROM THE VERIFICATION SERVER BELOW # Reading prediction format TS PFRMAT TS TARGET T0574 AUTHOR SAM-T08-server REMARK 6 REMARK 6 T0574 model 2 Thu Jun 3 21:57:25 2010 # Reading MODEL 2 PARENT N/A # Reading prediction format TS (DONE) # Checking the TS prediction MODEL 2 # Checking the TS prediction MODEL 2 (DONE) # MODEL index: 2 # Target name: T0574 # Total number of residues in target: 126 # Total number of residues in model: 126 # Total number of atoms in model: 917 # Number of atoms with 1.0 occupancy: 918 # Number of fragments in model: 1 # Number of METHOD records: 7 # No errors in format. Checking prediction geometry ... Checking prediction geometry ... # Warning! CA-CA clash (2.92A) between residues THR8 and ASP86 # Warning! CA-CA clash (2.64A) between residues THR8 and LEU89 # Warning! CA-CA clash (3.36A) between residues THR8 and THR90 # Warning! CA-CA clash (1.57A) between residues LEU9 and LEU89 # Warning! Severe CA-CA clash (1.57A) between residues LEU9 and LEU89 # Warning! CA-CA clash (3.26A) between residues GLY11 and ASN67 # Warning! CA-CA clash (2.18A) between residues GLY11 and GLU88 # Warning! CA-CA clash (2.66A) between residues LEU12 and GLU88 # Warning! CA-CA clash (3.01A) between residues LEU13 and LEU65 # Warning! CA-CA clash (3.26A) between residues ALA14 and ALA104 # Warning! CA-CA clash (3.10A) between residues ALA14 and ILE105 # Warning! CA-CA clash (3.03A) between residues ALA15 and LEU65 # Warning! CA-CA clash (1.55A) between residues ALA15 and LYS66 # Warning! Severe CA-CA clash (1.55A) between residues ALA15 and LYS66 # Warning! CA-CA clash (1.54A) between residues PRO16 and SER64 # Warning! Severe CA-CA clash (1.54A) between residues PRO16 and SER64 # Warning! CA-CA clash (2.65A) between residues PRO16 and LEU65 # Warning! CA-CA clash (1.89A) between residues SER17 and PHE106 # Warning! Severe CA-CA clash (1.89A) between residues SER17 and PHE106 # Warning! CA-CA clash (2.48A) between residues LEU18 and PHE106 # Warning! CA-CA clash (2.64A) between residues LEU18 and ALA107 # Warning! CA-CA clash (3.39A) between residues LEU18 and VAL113 # Warning! CA-CA clash (1.37A) between residues GLY19 and ALA107 # Warning! Severe CA-CA clash (1.37A) between residues GLY19 and ALA107 # Warning! CA-CA clash (1.36A) between residues PHE20 and SER108 # Warning! Severe CA-CA clash (1.36A) between residues PHE20 and SER108 # Warning! CA-CA clash (2.59A) between residues ASP25 and ALA59 # Warning! CA-CA clash (0.01A) between residues VAL85 and GLU87 # Warning! Severe CA-CA clash (0.01A) between residues VAL85 and GLU87 # Warning! CA-CA clash (2.33A) between residues ASP86 and GLU88 # Warning! Too big distance ( 9.36A) between residues ASP92 and THR93 # Warning! Too big distance (16.89A) between residues GLU101 and GLY102 # ERROR! Too many steric clashes in the prediction. It can not be accepted. You might consider correction and resubmission of the prediction before the target deadline. # Checking prediction geometry (DONE) # Number of Warnings: 0 # Number of Errors: 1 Case number is: 6664a7238538f860410baeca804e193d From casp@predictioncenter.org Fri Jun 4 20:25:39 2010 X-Spam-Status: No, score=-99.9 required=3.0 tests=AWL,USER_IN_WHITELIST autolearn=no version=3.2.5 To: karplus@soe.ucsc.edu Subject: Submission ERROR for farmer@bmecluster.soe.ucsc.edu (SAM-T08-server, T0577, TS, model: 2) - SERVER From: Prediction Center Reply-To: casp@predictioncenter.org Content-type: text/plain Date: Fri, 4 Jun 2010 20:25:39 -0700 (PDT) YOUR SUBMISSION CANNOT BE ACCEPTED THE FORMAT OF YOUR PREDICTION IS NOT CORRECT Please check the format at: http://predictioncenter.org/casp9/index.cgi?page=format ########################################################## OUTPUT FROM THE VERIFICATION SERVER BELOW # Reading prediction format TS PFRMAT TS TARGET T0577 AUTHOR SAM-T08-server REMARK 6 REMARK 6 T0577 model 2 Fri Jun 4 20:25:27 2010 # Reading MODEL 2 PARENT N/A # Reading prediction format TS (DONE) # Checking the TS prediction MODEL 2 # Checking the TS prediction MODEL 2 (DONE) # MODEL index: 2 # Target name: T0577 # Total number of residues in target: 116 # Total number of residues in model: 116 # Total number of atoms in model: 957 # Number of atoms with 1.0 occupancy: 958 # Number of fragments in model: 1 # Number of METHOD records: 7 # No errors in format. Checking prediction geometry ... Checking prediction geometry ... # Warning! CA-CA clash (3.40A) between residues MET1 and PRO69 # Warning! CA-CA clash (3.45A) between residues ASN2 and ASN105 # Warning! CA-CA clash (1.45A) between residues ASN2 and LEU106 # Warning! Severe CA-CA clash (1.45A) between residues ASN2 and LEU106 # Warning! CA-CA clash (2.48A) between residues GLU3 and ASN105 # Warning! CA-CA clash (2.90A) between residues TYR10 and PRO11 # Warning! CA-CA clash (3.31A) between residues TYR10 and PRO37 # Warning! CA-CA clash (3.43A) between residues PRO11 and SER38 # Warning! CA-CA clash (0.21A) between residues THR13 and GLY39 # Warning! Severe CA-CA clash (0.21A) between residues THR13 and GLY39 # Warning! CA-CA clash (3.43A) between residues VAL14 and ASN40 # Warning! CA-CA clash (3.01A) between residues GLU15 and PHE41 # Warning! CA-CA clash (0.01A) between residues PRO18 and VAL19 # Warning! Severe CA-CA clash (0.01A) between residues PRO18 and VAL19 # Warning! CA-CA clash (2.61A) between residues GLU34 and PHE41 # Warning! CA-CA clash (3.19A) between residues GLU34 and ILE42 # Warning! Too big distance (17.33A) between residues GLY43 and THR44 # Warning! CA-CA clash (3.39A) between residues VAL45 and THR65 # Warning! CA-CA clash (0.01A) between residues PHE51 and GLY55 # Warning! Severe CA-CA clash (0.01A) between residues PHE51 and GLY55 # Warning! CA-CA clash (3.27A) between residues PRO53 and GLN93 # Warning! Too big distance ( 8.67A) between residues ASP54 and GLY55 # Warning! CA-CA clash (2.36A) between residues LEU67 and PHE99 # Warning! CA-CA clash (2.06A) between residues LEU67 and GLU100 # Warning! CA-CA clash (3.39A) between residues LYS68 and TYR98 # Warning! CA-CA clash (3.17A) between residues LYS68 and PHE99 # Warning! CA-CA clash (3.08A) between residues LYS68 and GLN107 # Warning! Too big distance (24.43A) between residues ASN76 and GLU77 # Warning! CA-CA clash (0.01A) between residues GLN87 and ASP89 # Warning! Severe CA-CA clash (0.01A) between residues GLN87 and ASP89 # Warning! CA-CA clash (0.02A) between residues SER88 and LYS90 # Warning! Severe CA-CA clash (0.02A) between residues SER88 and LYS90 # Warning! CA-CA clash (2.22A) between residues SER88 and LYS116 # Warning! CA-CA clash (2.21A) between residues LYS90 and LYS116 # Warning! CA-CA clash (0.13A) between residues GLU91 and ALA92 # Warning! Severe CA-CA clash (0.13A) between residues GLU91 and ALA92 # Warning! CA-CA clash (3.17A) between residues GLU91 and LYS116 # Warning! CA-CA clash (3.11A) between residues ALA92 and LYS116 # ERROR! Too many steric clashes in the prediction. It can not be accepted. You might consider correction and resubmission of the prediction before the target deadline. # Checking prediction geometry (DONE) # Number of Warnings: 0 # Number of Errors: 1 Case number is: ea79559ed045129744fc31071ac0e79b From casp@predictioncenter.org Mon Jun 7 18:36:40 2010 X-Spam-Status: No, score=-99.9 required=3.0 tests=AWL,USER_IN_WHITELIST autolearn=no version=3.2.5 To: karplus@soe.ucsc.edu Subject: Submission ERROR for farmer@bmecluster.soe.ucsc.edu (SAM-T08-server, T0579, TS, model: 2) - SERVER From: Prediction Center Reply-To: casp@predictioncenter.org Content-type: text/plain Date: Mon, 7 Jun 2010 18:36:40 -0700 (PDT) YOUR SUBMISSION CANNOT BE ACCEPTED THE FORMAT OF YOUR PREDICTION IS NOT CORRECT Please check the format at: http://predictioncenter.org/casp9/index.cgi?page=format ########################################################## OUTPUT FROM THE VERIFICATION SERVER BELOW # Reading prediction format TS PFRMAT TS TARGET T0579 AUTHOR SAM-T08-server REMARK 6 REMARK 6 T0579 model 2 Mon Jun 7 18:36:20 2010 # Reading MODEL 2 PARENT N/A # Reading prediction format TS (DONE) # Checking the TS prediction MODEL 2 # Checking the TS prediction MODEL 2 (DONE) # MODEL index: 2 # Target name: T0579 # Total number of residues in target: 124 # Total number of residues in model: 124 # Total number of atoms in model: 944 # Number of atoms with 1.0 occupancy: 945 # Number of fragments in model: 1 # Number of METHOD records: 7 # No errors in format. Checking prediction geometry ... Checking prediction geometry ... # Warning! CA-CA clash (3.14A) between residues GLY4 and ALA86 # Warning! CA-CA clash (2.86A) between residues ILE8 and ILE88 # Warning! CA-CA clash (3.20A) between residues ILE9 and ILE88 # Warning! CA-CA clash (3.07A) between residues ASN10 and ALA91 # Warning! CA-CA clash (1.40A) between residues GLY16 and GLU74 # Warning! Severe CA-CA clash (1.40A) between residues GLY16 and GLU74 # Warning! CA-CA clash (1.41A) between residues GLY16 and ASP100 # Warning! Severe CA-CA clash (1.41A) between residues GLY16 and ASP100 # Warning! CA-CA clash (1.85A) between residues MET17 and LEU73 # Warning! Severe CA-CA clash (1.85A) between residues MET17 and LEU73 # Warning! CA-CA clash (2.57A) between residues MET17 and GLU74 # Warning! CA-CA clash (2.55A) between residues MET17 and ASP100 # Warning! CA-CA clash (2.65A) between residues LYS18 and LEU73 # Warning! CA-CA clash (3.29A) between residues GLY19 and HIS77 # Warning! CA-CA clash (3.29A) between residues GLY19 and LYS124 # Warning! CA-CA clash (2.30A) between residues ALA20 and SER76 # Warning! CA-CA clash (2.66A) between residues ALA20 and HIS77 # Warning! CA-CA clash (2.16A) between residues ALA20 and LYS124 # Warning! CA-CA clash (2.37A) between residues GLU21 and ALA123 # Warning! CA-CA clash (0.26A) between residues TYR33 and VAL34 # Warning! Severe CA-CA clash (0.26A) between residues TYR33 and VAL34 # Warning! CA-CA clash (2.31A) between residues ASP47 and TRP51 # Warning! CA-CA clash (2.59A) between residues ASP47 and VAL52 # Warning! CA-CA clash (3.04A) between residues HIS48 and VAL52 # Warning! CA-CA clash (2.93A) between residues HIS48 and VAL110 # Warning! CA-CA clash (1.70A) between residues HIS49 and GLU56 # Warning! Severe CA-CA clash (1.70A) between residues HIS49 and GLU56 # Warning! Too big distance (11.84A) between residues LYS50 and TRP51 # Warning! CA-CA clash (3.30A) between residues LYS50 and GLU56 # Warning! Too big distance ( 4.85A) between residues ASP59 and ALA60 # Warning! CA-CA clash (2.73A) between residues ILE72 and ALA123 # Warning! CA-CA clash (0.02A) between residues GLU74 and ASP100 # Warning! Severe CA-CA clash (0.02A) between residues GLU74 and ASP100 # Warning! CA-CA clash (2.38A) between residues ALA75 and TYR101 # Warning! CA-CA clash (3.26A) between residues HIS77 and LYS124 # Warning! CA-CA clash (2.82A) between residues GLY80 and TYR97 # Warning! CA-CA clash (0.01A) between residues ASP89 and SER90 # Warning! Severe CA-CA clash (0.01A) between residues ASP89 and SER90 # Warning! Too big distance (15.06A) between residues VAL99 and ASP100 # ERROR! Too many steric clashes in the prediction. It can not be accepted. You might consider correction and resubmission of the prediction before the target deadline. # Checking prediction geometry (DONE) # Number of Warnings: 0 # Number of Errors: 1 Case number is: 0c9470b95027a458ed833efa378e136e From casp@predictioncenter.org Wed Jun 9 07:27:19 2010 X-Spam-Status: No, score=-99.9 required=3.0 tests=AWL,USER_IN_WHITELIST autolearn=no version=3.2.5 To: karplus@soe.ucsc.edu Subject: Submission ERROR for farmer@bmecluster.soe.ucsc.edu (SAM-T08-server, T0581, TS, model: 2) - SERVER From: Prediction Center Reply-To: casp@predictioncenter.org Content-type: text/plain Date: Wed, 9 Jun 2010 07:27:19 -0700 (PDT) YOUR SUBMISSION CANNOT BE ACCEPTED THE FORMAT OF YOUR PREDICTION IS NOT CORRECT Please check the format at: http://predictioncenter.org/casp9/index.cgi?page=format ########################################################## OUTPUT FROM THE VERIFICATION SERVER BELOW # Reading prediction format TS PFRMAT TS TARGET T0581 AUTHOR SAM-T08-server REMARK 6 REMARK 6 T0581 model 2 Wed Jun 9 07:27:11 2010 # Reading MODEL 2 PARENT N/A # Reading prediction format TS (DONE) # Checking the TS prediction MODEL 2 # Checking the TS prediction MODEL 2 (DONE) # MODEL index: 2 # Target name: T0581 # Total number of residues in target: 136 # Total number of residues in model: 136 # Total number of atoms in model: 1047 # Number of atoms with 1.0 occupancy: 1048 # Number of fragments in model: 1 # Number of METHOD records: 7 # No errors in format. Checking prediction geometry ... Checking prediction geometry ... # Warning! CA-CA clash (2.92A) between residues SER2 and VAL91 # Warning! CA-CA clash (0.99A) between residues SER2 and CYS92 # Warning! Severe CA-CA clash (0.99A) between residues SER2 and CYS92 # Warning! CA-CA clash (2.66A) between residues ARG3 and GLY88 # Warning! CA-CA clash (2.83A) between residues PHE4 and LEU87 # Warning! CA-CA clash (3.21A) between residues PHE4 and VAL91 # Warning! CA-CA clash (3.32A) between residues MET5 and SER90 # Warning! CA-CA clash (2.47A) between residues MET5 and VAL91 # Warning! CA-CA clash (2.03A) between residues ALA6 and SER90 # Warning! CA-CA clash (2.45A) between residues LEU7 and GLN86 # Warning! CA-CA clash (2.92A) between residues LEU7 and LEU87 # Warning! CA-CA clash (0.01A) between residues LEU22 and LEU31 # Warning! Severe CA-CA clash (0.01A) between residues LEU22 and LEU31 # Warning! CA-CA clash (0.02A) between residues LYS23 and GLU32 # Warning! Severe CA-CA clash (0.02A) between residues LYS23 and GLU32 # Warning! CA-CA clash (0.45A) between residues ASP24 and LYS33 # Warning! Severe CA-CA clash (0.45A) between residues ASP24 and LYS33 # Warning! CA-CA clash (1.38A) between residues PHE25 and VAL34 # Warning! Severe CA-CA clash (1.38A) between residues PHE25 and VAL34 # Warning! CA-CA clash (2.74A) between residues GLU26 and VAL34 # Warning! CA-CA clash (3.33A) between residues GLU26 and ALA35 # Warning! CA-CA clash (1.01A) between residues LEU27 and GLU37 # Warning! Severe CA-CA clash (1.01A) between residues LEU27 and GLU37 # Warning! CA-CA clash (2.95A) between residues LYS29 and SER38 # Warning! Too big distance (13.53A) between residues MET30 and LEU31 # Warning! CA-CA clash (3.13A) between residues MET30 and SER38 # Warning! Too big distance ( 7.18A) between residues GLN61 and LEU62 # Warning! CA-CA clash (1.44A) between residues MET76 and SER82 # Warning! Severe CA-CA clash (1.44A) between residues MET76 and SER82 # Warning! CA-CA clash (0.01A) between residues ALA105 and ILE106 # Warning! Severe CA-CA clash (0.01A) between residues ALA105 and ILE106 # ERROR! Too many steric clashes in the prediction. It can not be accepted. You might consider correction and resubmission of the prediction before the target deadline. # Checking prediction geometry (DONE) # Number of Warnings: 0 # Number of Errors: 1 Case number is: e05485265b0b27a4eb288abdea0ff94d From casp@predictioncenter.org Thu Jun 10 15:31:12 2010 X-Spam-Status: No, score=-99.9 required=3.0 tests=AWL,USER_IN_WHITELIST autolearn=no version=3.2.5 To: karplus@soe.ucsc.edu Subject: Submission ERROR for farmer@soe.ucsc.edu (SAM-T02-server, T0585, AL, model: 2) - SERVER From: Prediction Center Reply-To: casp@predictioncenter.org Content-type: text/plain Date: Thu, 10 Jun 2010 15:31:12 -0700 (PDT) YOUR SUBMISSION CANNOT BE ACCEPTED THE FORMAT OF YOUR PREDICTION IS NOT CORRECT Please check the format at: http://predictioncenter.org/casp9/index.cgi?page=format ########################################################## OUTPUT FROM THE VERIFICATION SERVER BELOW # Reading prediction format AL PFRMAT AL TARGET T0585 # ERROR! There is no target name: T0585 # TARGET Txxxx # was expected # Number of Warnings: 0 # Number of Errors: 1 Case number is: e0b35642dd01745f045e1fcdb29b7039 From casp@predictioncenter.org Thu Jun 10 15:31:12 2010 X-Spam-Status: No, score=-99.9 required=3.0 tests=AWL,USER_IN_WHITELIST autolearn=no version=3.2.5 To: karplus@soe.ucsc.edu Subject: Submission ERROR for farmer@soe.ucsc.edu (SAM-T02-server, T0585, AL, model: 1) - SERVER From: Prediction Center Reply-To: casp@predictioncenter.org Content-type: text/plain Date: Thu, 10 Jun 2010 15:31:12 -0700 (PDT) YOUR SUBMISSION CANNOT BE ACCEPTED THE FORMAT OF YOUR PREDICTION IS NOT CORRECT Please check the format at: http://predictioncenter.org/casp9/index.cgi?page=format ########################################################## OUTPUT FROM THE VERIFICATION SERVER BELOW # Reading prediction format AL PFRMAT AL TARGET T0585 # ERROR! There is no target name: T0585 # TARGET Txxxx # was expected # Number of Warnings: 0 # Number of Errors: 1 Case number is: e0b35642dd01745f045e1fcdb29b7039 From casp@predictioncenter.org Thu Jun 10 15:59:10 2010 X-Spam-Status: No, score=-99.9 required=3.0 tests=AWL,USER_IN_WHITELIST autolearn=no version=3.2.5 To: karplus@soe.ucsc.edu Subject: Submission ERROR for farmer@soe.ucsc.edu (SAM-T02-server, T0584, AL, model: 1) - SERVER From: Prediction Center Reply-To: casp@predictioncenter.org Content-type: text/plain Date: Thu, 10 Jun 2010 15:59:10 -0700 (PDT) YOUR SUBMISSION CANNOT BE ACCEPTED THE FORMAT OF YOUR PREDICTION IS NOT CORRECT Please check the format at: http://predictioncenter.org/casp9/index.cgi?page=format ########################################################## OUTPUT FROM THE VERIFICATION SERVER BELOW # Reading prediction format AL PFRMAT AL TARGET T0584 # ERROR! There is no target name: T0584 # TARGET Txxxx # was expected # Number of Warnings: 0 # Number of Errors: 1 Case number is: 41082504f152046f4aa226467da1387d From casp@predictioncenter.org Tue Jun 15 12:14:31 2010 X-Spam-Status: No, score=-99.9 required=3.0 tests=AWL,USER_IN_WHITELIST autolearn=no version=3.2.5 To: karplus@soe.ucsc.edu Subject: Submission ERROR for farmer@soe.ucsc.edu (SAM-T02-server, T0590, AL, model: 5) - SERVER From: Prediction Center Reply-To: casp@predictioncenter.org Content-type: text/plain Date: Tue, 15 Jun 2010 12:14:31 -0700 (PDT) YOUR SUBMISSION CANNOT BE ACCEPTED THE FORMAT OF YOUR PREDICTION IS NOT CORRECT Please check the format at: http://predictioncenter.org/casp9/index.cgi?page=format ########################################################## OUTPUT FROM THE VERIFICATION SERVER BELOW # Reading prediction format AL PFRMAT AL TARGET T0590 AUTHOR SAM-T02-server # Reading MODEL 5 PARENT 1dboA # Reading prediction format AL (DONE) # Converting alignments into a 3D structure # ERROR! Check PARENT record and AL format. # Converting alignments into a 3D structure (DONE) # Checking the AL prediction MODEL 5 # ERROR! Check the number 0 of residues in the model. (In TARGET: 137) # ERROR! The number of predicted atoms in the model: 0 # Number of errors = 3. # Number of Warnings: 0 # Number of Errors: 3 Case number is: 2f52e540565797ecd13b8b4a4d0f0d35 From casp@predictioncenter.org Tue Jun 22 13:43:39 2010 X-Spam-Status: No, score=-99.9 required=3.0 tests=AWL,USER_IN_WHITELIST autolearn=no version=3.2.5 To: karplus@soe.ucsc.edu Subject: Submission ERROR for farmer@soe.ucsc.edu (SAM-T02-server, T0601, AL, model: 1) - SERVER From: Prediction Center Reply-To: casp@predictioncenter.org Content-type: text/plain Date: Tue, 22 Jun 2010 13:43:39 -0700 (PDT) YOUR SUBMISSION CANNOT BE ACCEPTED THE FORMAT OF YOUR PREDICTION IS NOT CORRECT Please check the format at: http://predictioncenter.org/casp9/index.cgi?page=format ########################################################## OUTPUT FROM THE VERIFICATION SERVER BELOW # Reading prediction format AL PFRMAT AL TARGET T0601 AUTHOR SAM-T02-server # Reading MODEL 1 PARENT 1vl4A # Reading prediction format AL (DONE) # Converting alignments into a 3D structure # Loading PARENT structure: 1vl4 (chain: A) # Number of residues in PARENT structure: 429 # Converting alignments into a 3D structure (DONE) # Checking the AL prediction MODEL 1 # IMPORTANT NOTE! Not complete main chain atoms for residue: P 14 # !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! # # It is requested that coordinate data be supplied for at least # # all non-hydrogen main chain atoms, i.e. the N, CA, C and O # # atoms of every residue. Specifically, if only CA atoms are # # predicted by the method, predictors are encouraged to build # # the main chain atoms for every residue before submission to # # CASP. If only CA atoms were submitted it would not be possible # # to run most of the analysis software, which would severely # # limit the evaluation of that prediction. # # !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! # # ERROR! Check residue: P 14 (! There is no CA atom !) # Checking the AL prediction MODEL 1 (DONE) # Number of errors = 1. # Number of Warnings: 1 # Number of Errors: 1 Case number is: 36b2d371948c5d00ed19af0ae8a75458 From casp@predictioncenter.org Tue Jun 22 14:15:12 2010 X-Spam-Status: No, score=-99.9 required=3.0 tests=AWL,USER_IN_WHITELIST autolearn=no version=3.2.5 To: karplus@soe.ucsc.edu Subject: Submission ERROR for farmer@soe.ucsc.edu (SAM-T02-server, T0601, AL, model: 1) - SERVER From: Prediction Center Reply-To: casp@predictioncenter.org Content-type: text/plain Date: Tue, 22 Jun 2010 14:15:12 -0700 (PDT) YOUR SUBMISSION CANNOT BE ACCEPTED THE FORMAT OF YOUR PREDICTION IS NOT CORRECT Please check the format at: http://predictioncenter.org/casp9/index.cgi?page=format ########################################################## OUTPUT FROM THE VERIFICATION SERVER BELOW # Reading prediction format AL PFRMAT AL TARGET T0601 AUTHOR SAM-T02-server # Reading MODEL 1 PARENT 1vl4A # Reading prediction format AL (DONE) # Converting alignments into a 3D structure # Loading PARENT structure: 1vl4 (chain: A) # Number of residues in PARENT structure: 429 # Converting alignments into a 3D structure (DONE) # Checking the AL prediction MODEL 1 # IMPORTANT NOTE! Not complete main chain atoms for residue: P 14 # !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! # # It is requested that coordinate data be supplied for at least # # all non-hydrogen main chain atoms, i.e. the N, CA, C and O # # atoms of every residue. Specifically, if only CA atoms are # # predicted by the method, predictors are encouraged to build # # the main chain atoms for every residue before submission to # # CASP. If only CA atoms were submitted it would not be possible # # to run most of the analysis software, which would severely # # limit the evaluation of that prediction. # # !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! # # ERROR! Check residue: P 14 (! There is no CA atom !) # Checking the AL prediction MODEL 1 (DONE) # Number of errors = 1. # Number of Warnings: 1 # Number of Errors: 1 Case number is: 3065feda642da9c52fccb28730563486 From casp@predictioncenter.org Tue Jun 22 14:16:40 2010 X-Spam-Status: No, score=-99.9 required=3.0 tests=AWL,USER_IN_WHITELIST autolearn=no version=3.2.5 To: karplus@soe.ucsc.edu Subject: Submission ERROR for farmer@soe.ucsc.edu (SAM-T02-server, T0601, AL, model: 1) - SERVER From: Prediction Center Reply-To: casp@predictioncenter.org Content-type: text/plain Date: Tue, 22 Jun 2010 14:16:40 -0700 (PDT) YOUR SUBMISSION CANNOT BE ACCEPTED THE FORMAT OF YOUR PREDICTION IS NOT CORRECT Please check the format at: http://predictioncenter.org/casp9/index.cgi?page=format ########################################################## OUTPUT FROM THE VERIFICATION SERVER BELOW # Reading prediction format AL PFRMAT AL TARGET T0601 AUTHOR SAM-T02-server # Reading MODEL 1 PARENT 1vl4A # Reading prediction format AL (DONE) # Converting alignments into a 3D structure # Loading PARENT structure: 1vl4 (chain: A) # Number of residues in PARENT structure: 429 # Converting alignments into a 3D structure (DONE) # Checking the AL prediction MODEL 1 # IMPORTANT NOTE! Not complete main chain atoms for residue: P 14 # !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! # # It is requested that coordinate data be supplied for at least # # all non-hydrogen main chain atoms, i.e. the N, CA, C and O # # atoms of every residue. Specifically, if only CA atoms are # # predicted by the method, predictors are encouraged to build # # the main chain atoms for every residue before submission to # # CASP. If only CA atoms were submitted it would not be possible # # to run most of the analysis software, which would severely # # limit the evaluation of that prediction. # # !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! # # ERROR! Check residue: P 14 (! There is no CA atom !) # Checking the AL prediction MODEL 1 (DONE) # Number of errors = 1. # Number of Warnings: 1 # Number of Errors: 1 Case number is: d12b15b9b5266ab047cbece006970f8d From casp@predictioncenter.org Tue Jun 22 14:16:40 2010 X-Spam-Status: No, score=-99.9 required=3.0 tests=AWL,USER_IN_WHITELIST autolearn=no version=3.2.5 To: karplus@soe.ucsc.edu Subject: Submission ERROR for farmer@soe.ucsc.edu (SAM-T02-server, T0601, AL, model: 4) - SERVER From: Prediction Center Reply-To: casp@predictioncenter.org Content-type: text/plain Date: Tue, 22 Jun 2010 14:16:40 -0700 (PDT) YOUR SUBMISSION CANNOT BE ACCEPTED THE FORMAT OF YOUR PREDICTION IS NOT CORRECT Please check the format at: http://predictioncenter.org/casp9/index.cgi?page=format ########################################################## OUTPUT FROM THE VERIFICATION SERVER BELOW # Reading prediction format AL PFRMAT AL TARGET T0601 AUTHOR SAM-T02-server # Reading MODEL 4 PARENT 2ojnA # Reading prediction format AL (DONE) # Converting alignments into a 3D structure # ERROR! Check PARENT record and AL format. # Loading PARENT structure: 2ojn (chain: A) # Number of residues in PARENT structure: 22 # Converting alignments into a 3D structure (DONE) # Checking the AL prediction MODEL 4 # Checking the AL prediction MODEL 4 (DONE) # Number of errors = 1. # Number of Warnings: 0 # Number of Errors: 1 Case number is: d12b15b9b5266ab047cbece006970f8d From casp@predictioncenter.org Tue Jun 22 14:15:13 2010 X-Spam-Status: No, score=-99.9 required=3.0 tests=AWL,USER_IN_WHITELIST autolearn=no version=3.2.5 To: karplus@soe.ucsc.edu Subject: Submission ERROR for farmer@soe.ucsc.edu (SAM-T02-server, T0601, AL, model: 4) - SERVER From: Prediction Center Reply-To: casp@predictioncenter.org Content-type: text/plain Date: Tue, 22 Jun 2010 14:15:13 -0700 (PDT) YOUR SUBMISSION CANNOT BE ACCEPTED THE FORMAT OF YOUR PREDICTION IS NOT CORRECT Please check the format at: http://predictioncenter.org/casp9/index.cgi?page=format ########################################################## OUTPUT FROM THE VERIFICATION SERVER BELOW # Reading prediction format AL PFRMAT AL TARGET T0601 AUTHOR SAM-T02-server # Reading MODEL 4 PARENT 2ojnA # Reading prediction format AL (DONE) # Converting alignments into a 3D structure # ERROR! Check PARENT record and AL format. # Loading PARENT structure: 2ojn (chain: A) # Number of residues in PARENT structure: 22 # Converting alignments into a 3D structure (DONE) # Checking the AL prediction MODEL 4 # Checking the AL prediction MODEL 4 (DONE) # Number of errors = 1. # Number of Warnings: 0 # Number of Errors: 1 Case number is: 3065feda642da9c52fccb28730563486 From casp@predictioncenter.org Wed Jun 23 10:50:11 2010 X-Spam-Status: No, score=-99.9 required=3.0 tests=AWL,USER_IN_WHITELIST autolearn=no version=3.2.5 To: karplus@soe.ucsc.edu Subject: Submission ERROR for farmer@soe.ucsc.edu (SAM-T02-server, T0602, AL, model: 4) - SERVER From: Prediction Center Reply-To: casp@predictioncenter.org Content-type: text/plain Date: Wed, 23 Jun 2010 10:50:11 -0700 (PDT) YOUR SUBMISSION CANNOT BE ACCEPTED THE FORMAT OF YOUR PREDICTION IS NOT CORRECT Please check the format at: http://predictioncenter.org/casp9/index.cgi?page=format ########################################################## OUTPUT FROM THE VERIFICATION SERVER BELOW # Reading prediction format AL PFRMAT AL TARGET T0602 AUTHOR SAM-T02-server # Reading MODEL 4 PARENT 2jz2A # Reading prediction format AL (DONE) # Converting alignments into a 3D structure # ERROR! Check PARENT record and AL format. # Converting alignments into a 3D structure (DONE) # Checking the AL prediction MODEL 4 # ERROR! Check the number 0 of residues in the model. (In TARGET: 123) # ERROR! The number of predicted atoms in the model: 0 # Number of errors = 3. # Number of Warnings: 0 # Number of Errors: 3 Case number is: 4017d918e02511bb26f692dc866e4955 From casp@predictioncenter.org Thu Jun 24 21:41:27 2010 X-Spam-Status: No, score=-99.9 required=3.0 tests=AWL,USER_IN_WHITELIST autolearn=no version=3.2.5 To: karplus@soe.ucsc.edu Subject: Submission ERROR for karplus@soe.ucsc.edu (SAM-T08-server, T0599, TS) - SERVER From: Prediction Center Reply-To: casp@predictioncenter.org Content-type: text/plain Date: Thu, 24 Jun 2010 21:41:27 -0700 (PDT) YOUR SUBMISSION CANNOT BE ACCEPTED THE FORMAT OF YOUR PREDICTION IS NOT CORRECT Please check the format at: http://predictioncenter.org/casp9/index.cgi?page=format ########################################################## OUTPUT FROM THE VERIFICATION SERVER BELOW Target 'T0599' has expired for server prediction Case number is: cf058845bfaa76be34c788dfc716e081 From casp@predictioncenter.org Wed Jun 30 10:19:03 2010 X-Spam-Status: No, score=-99.9 required=3.0 tests=AWL,USER_IN_WHITELIST autolearn=no version=3.2.5 To: karplus@soe.ucsc.edu Subject: Submission ERROR for farmer@soe.ucsc.edu (SAM-T02-server, T0612, AL, model: 5) - SERVER From: Prediction Center Reply-To: casp@predictioncenter.org Content-type: text/plain Date: Wed, 30 Jun 2010 10:19:03 -0700 (PDT) YOUR SUBMISSION CANNOT BE ACCEPTED THE FORMAT OF YOUR PREDICTION IS NOT CORRECT Please check the format at: http://predictioncenter.org/casp9/index.cgi?page=format ########################################################## OUTPUT FROM THE VERIFICATION SERVER BELOW # Reading prediction format AL PFRMAT AL TARGET T0612 AUTHOR SAM-T02-server # Reading MODEL 5 PARENT 2a2uA # Reading prediction format AL (DONE) # Converting alignments into a 3D structure # ERROR! Check PARENT record and AL format. # Converting alignments into a 3D structure (DONE) # Checking the AL prediction MODEL 5 # ERROR! Check the number 0 of residues in the model. (In TARGET: 129) # ERROR! The number of predicted atoms in the model: 0 # Number of errors = 3. # Number of Warnings: 0 # Number of Errors: 3 Case number is: 46f9197541bb002197cfd5eb520c41b5 From casp@predictioncenter.org Fri Jul 2 17:47:25 2010 X-Spam-Status: No, score=-99.9 required=3.0 tests=AWL,USER_IN_WHITELIST autolearn=no version=3.2.5 To: karplus@soe.ucsc.edu Subject: Submission ERROR for farmer@soe.ucsc.edu (SAM-T02-server, T0616, AL, model: 4) - SERVER From: Prediction Center Reply-To: casp@predictioncenter.org Content-type: text/plain Date: Fri, 2 Jul 2010 17:47:25 -0700 (PDT) YOUR SUBMISSION CANNOT BE ACCEPTED THE FORMAT OF YOUR PREDICTION IS NOT CORRECT Please check the format at: http://predictioncenter.org/casp9/index.cgi?page=format ########################################################## OUTPUT FROM THE VERIFICATION SERVER BELOW # Reading prediction format AL PFRMAT AL TARGET T0616 AUTHOR SAM-T02-server # Reading MODEL 4 PARENT 2aegA # Reading prediction format AL (DONE) # Converting alignments into a 3D structure # ERROR! Check PARENT record and AL format. # Converting alignments into a 3D structure (DONE) # Checking the AL prediction MODEL 4 # ERROR! Check the number 0 of residues in the model. (In TARGET: 103) # ERROR! The number of predicted atoms in the model: 0 # Number of errors = 3. # Number of Warnings: 0 # Number of Errors: 3 Case number is: 400f884f2f1eb25ef827cdcb3e266200 From casp@predictioncenter.org Fri Jul 2 17:47:25 2010 X-Spam-Status: No, score=-99.9 required=3.0 tests=AWL,USER_IN_WHITELIST autolearn=no version=3.2.5 To: karplus@soe.ucsc.edu Subject: Submission ERROR for farmer@soe.ucsc.edu (SAM-T02-server, T0616, AL, model: 5) - SERVER From: Prediction Center Reply-To: casp@predictioncenter.org Content-type: text/plain Date: Fri, 2 Jul 2010 17:47:25 -0700 (PDT) YOUR SUBMISSION CANNOT BE ACCEPTED THE FORMAT OF YOUR PREDICTION IS NOT CORRECT Please check the format at: http://predictioncenter.org/casp9/index.cgi?page=format ########################################################## OUTPUT FROM THE VERIFICATION SERVER BELOW # Reading prediction format AL PFRMAT AL TARGET T0616 AUTHOR SAM-T02-server # Reading MODEL 5 PARENT 2kvpA # Reading prediction format AL (DONE) # Converting alignments into a 3D structure # ERROR! Check PARENT record and AL format. # Converting alignments into a 3D structure (DONE) # Checking the AL prediction MODEL 5 # ERROR! Check the number 0 of residues in the model. (In TARGET: 103) # ERROR! The number of predicted atoms in the model: 0 # Number of errors = 3. # Number of Warnings: 0 # Number of Errors: 3 Case number is: 400f884f2f1eb25ef827cdcb3e266200 From casp@predictioncenter.org Tue Jul 6 20:53:58 2010 X-Spam-Status: No, score=-99.9 required=3.0 tests=AWL,USER_IN_WHITELIST autolearn=no version=3.2.5 To: karplus@soe.ucsc.edu Subject: Submission ERROR for farmer@soe.ucsc.edu (SAM-T02-server, T0623, AL, model: 4) - SERVER From: Prediction Center Reply-To: casp@predictioncenter.org Content-type: text/plain Date: Tue, 6 Jul 2010 20:53:58 -0700 (PDT) YOUR SUBMISSION CANNOT BE ACCEPTED THE FORMAT OF YOUR PREDICTION IS NOT CORRECT Please check the format at: http://predictioncenter.org/casp9/index.cgi?page=format ########################################################## OUTPUT FROM THE VERIFICATION SERVER BELOW # Reading prediction format AL PFRMAT AL TARGET T0623 AUTHOR SAM-T02-server # Reading MODEL 4 PARENT 1ae9A # Reading prediction format AL (DONE) # Converting alignments into a 3D structure # Loading PARENT structure: 1ae9 (chain: A) # Number of residues in PARENT structure: 269 # Converting alignments into a 3D structure (DONE) # Checking the AL prediction MODEL 4 # IMPORTANT NOTE! Not complete main chain atoms for residue: S 190 # !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! # # It is requested that coordinate data be supplied for at least # # all non-hydrogen main chain atoms, i.e. the N, CA, C and O # # atoms of every residue. Specifically, if only CA atoms are # # predicted by the method, predictors are encouraged to build # # the main chain atoms for every residue before submission to # # CASP. If only CA atoms were submitted it would not be possible # # to run most of the analysis software, which would severely # # limit the evaluation of that prediction. # # !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! # # ERROR! Check residue: S 190 (! There is no CA atom !) # Checking the AL prediction MODEL 4 (DONE) # Number of errors = 1. # Number of Warnings: 1 # Number of Errors: 1 Case number is: 74202d441b9c718e099bd3b220c571bf From casp@predictioncenter.org Wed Jul 7 05:25:20 2010 X-Spam-Status: No, score=-99.9 required=3.0 tests=AWL,USER_IN_WHITELIST autolearn=no version=3.2.5 To: karplus@soe.ucsc.edu Subject: Submission ERROR for farmer@bmecluster.soe.ucsc.edu (SAM-T08-server, T0622, TS, model: 2) - SERVER From: Prediction Center Reply-To: casp@predictioncenter.org Content-type: text/plain Date: Wed, 7 Jul 2010 05:25:20 -0700 (PDT) YOUR SUBMISSION CANNOT BE ACCEPTED THE FORMAT OF YOUR PREDICTION IS NOT CORRECT Please check the format at: http://predictioncenter.org/casp9/index.cgi?page=format ########################################################## OUTPUT FROM THE VERIFICATION SERVER BELOW # Reading prediction format TS PFRMAT TS TARGET T0622 AUTHOR SAM-T08-server REMARK 6 REMARK 6 T0622 model 2 Wed Jul 7 05:24:59 2010 # Reading MODEL 2 PARENT N/A # Reading prediction format TS (DONE) # Checking the TS prediction MODEL 2 # Checking the TS prediction MODEL 2 (DONE) # MODEL index: 2 # Target name: T0622 # Total number of residues in target: 138 # Total number of residues in model: 138 # Total number of atoms in model: 1074 # Number of atoms with 1.0 occupancy: 1075 # Number of fragments in model: 1 # Number of METHOD records: 7 # No errors in format. Checking prediction geometry ... Checking prediction geometry ... # Warning! Too big distance ( 6.75A) between residues MET43 and GLN44 # Warning! Too big distance ( 7.06A) between residues ARG50 and PRO51 # Warning! Too big distance ( 6.15A) between residues HIS61 and CYS62 # Warning! CA-CA clash (3.43A) between residues SER72 and LEU98 # Warning! CA-CA clash (0.02A) between residues GLN75 and LYS78 # Warning! Severe CA-CA clash (0.02A) between residues GLN75 and LYS78 # Warning! CA-CA clash (0.16A) between residues VAL76 and LYS79 # Warning! Severe CA-CA clash (0.16A) between residues VAL76 and LYS79 # Warning! Too big distance ( 5.47A) between residues GLN77 and LYS78 # Warning! CA-CA clash (0.50A) between residues GLN77 and VAL80 # Warning! Severe CA-CA clash (0.50A) between residues GLN77 and VAL80 # Warning! CA-CA clash (3.41A) between residues GLN77 and ILE81 # Warning! CA-CA clash (3.42A) between residues ASN97 and GLY109 # Warning! CA-CA clash (3.49A) between residues ASN97 and ALA124 # Warning! CA-CA clash (2.78A) between residues LEU98 and THR126 # Warning! CA-CA clash (2.75A) between residues ASP99 and THR126 # Warning! CA-CA clash (2.30A) between residues ASP99 and PRO127 # Warning! CA-CA clash (3.40A) between residues ASP100 and THR126 # Warning! CA-CA clash (3.42A) between residues ASP100 and LEU131 # Warning! CA-CA clash (0.01A) between residues LEU101 and SER115 # Warning! Severe CA-CA clash (0.01A) between residues LEU101 and SER115 # Warning! CA-CA clash (1.10A) between residues LEU101 and MET132 # Warning! Severe CA-CA clash (1.10A) between residues LEU101 and MET132 # Warning! CA-CA clash (1.01A) between residues VAL102 and ILE116 # Warning! Severe CA-CA clash (1.01A) between residues VAL102 and ILE116 # Warning! CA-CA clash (3.13A) between residues ASN103 and ASP117 # Warning! CA-CA clash (1.40A) between residues ILE108 and VAL123 # Warning! Severe CA-CA clash (1.40A) between residues ILE108 and VAL123 # Warning! CA-CA clash (1.62A) between residues ILE108 and ALA124 # Warning! Severe CA-CA clash (1.62A) between residues ILE108 and ALA124 # Warning! Too big distance (18.48A) between residues VAL114 and SER115 # Warning! CA-CA clash (1.09A) between residues SER115 and MET132 # Warning! Severe CA-CA clash (1.09A) between residues SER115 and MET132 # Warning! CA-CA clash (3.00A) between residues ASP117 and ILE136 # Warning! CA-CA clash (2.54A) between residues ASP118 and ASN135 # Warning! CA-CA clash (1.70A) between residues ASP118 and ILE136 # Warning! Severe CA-CA clash (1.70A) between residues ASP118 and ILE136 # Warning! CA-CA clash (3.30A) between residues LEU119 and ILE136 # Warning! Too big distance (22.48A) between residues ARG122 and VAL123 # Warning! CA-CA clash (2.97A) between residues VAL123 and ALA124 # ERROR! Too many steric clashes in the prediction. It can not be accepted. You might consider correction and resubmission of the prediction before the target deadline. # Checking prediction geometry (DONE) # Number of Warnings: 0 # Number of Errors: 1 Case number is: 44c8f1187617020603d424f9b9fc5fa5 From casp@predictioncenter.org Wed Jul 7 06:50:33 2010 X-Spam-Status: No, score=-99.9 required=3.0 tests=AWL,USER_IN_WHITELIST autolearn=no version=3.2.5 To: karplus@soe.ucsc.edu Subject: Submission ERROR for farmer@bmecluster.soe.ucsc.edu (SAM-T08-server, T0621, TS, model: 2) - SERVER From: Prediction Center Reply-To: casp@predictioncenter.org Content-type: text/plain Date: Wed, 7 Jul 2010 06:50:33 -0700 (PDT) YOUR SUBMISSION CANNOT BE ACCEPTED THE FORMAT OF YOUR PREDICTION IS NOT CORRECT Please check the format at: http://predictioncenter.org/casp9/index.cgi?page=format ########################################################## OUTPUT FROM THE VERIFICATION SERVER BELOW # Reading prediction format TS PFRMAT TS TARGET T0621 AUTHOR SAM-T08-server REMARK 6 REMARK 6 T0621 model 2 Wed Jul 7 06:50:13 2010 # Reading MODEL 2 PARENT N/A # Reading prediction format TS (DONE) # Checking the TS prediction MODEL 2 # Checking the TS prediction MODEL 2 (DONE) # MODEL index: 2 # Target name: T0621 # Total number of residues in target: 172 # Total number of residues in model: 172 # Total number of atoms in model: 1382 # Number of atoms with 1.0 occupancy: 1383 # Number of fragments in model: 1 # Number of METHOD records: 7 # No errors in format. Checking prediction geometry ... Checking prediction geometry ... # Warning! Too big distance (12.23A) between residues PRO4 and ILE5 # Warning! CA-CA clash (3.18A) between residues ILE5 and ARG159 # Warning! Too big distance (17.48A) between residues SER12 and GLN13 # Warning! CA-CA clash (2.06A) between residues SER12 and PHE55 # Warning! CA-CA clash (2.78A) between residues SER12 and LEU56 # Warning! Too big distance (10.37A) between residues SER27 and TRP28 # Warning! CA-CA clash (0.01A) between residues PHE36 and TYR61 # Warning! Severe CA-CA clash (0.01A) between residues PHE36 and TYR61 # Warning! CA-CA clash (2.63A) between residues ALA37 and ILE133 # Warning! CA-CA clash (2.11A) between residues VAL38 and ASP132 # Warning! CA-CA clash (1.80A) between residues VAL38 and ILE133 # Warning! Severe CA-CA clash (1.80A) between residues VAL38 and ILE133 # Warning! CA-CA clash (2.12A) between residues HIS39 and THR130 # Warning! CA-CA clash (1.77A) between residues HIS39 and ARG131 # Warning! Severe CA-CA clash (1.77A) between residues HIS39 and ARG131 # Warning! CA-CA clash (2.11A) between residues HIS39 and THR135 # Warning! CA-CA clash (1.83A) between residues HIS39 and ILE136 # Warning! Severe CA-CA clash (1.83A) between residues HIS39 and ILE136 # Warning! CA-CA clash (2.16A) between residues ASP40 and TYR129 # Warning! CA-CA clash (2.31A) between residues ASP40 and THR130 # Warning! CA-CA clash (2.33A) between residues ASP40 and THR135 # Warning! CA-CA clash (2.89A) between residues LYS42 and ALA128 # Warning! CA-CA clash (2.57A) between residues GLY45 and ASP65 # Warning! CA-CA clash (3.50A) between residues GLY46 and ASP65 # Warning! CA-CA clash (2.69A) between residues LEU47 and ILE165 # Warning! CA-CA clash (3.43A) between residues ARG51 and THR164 # Warning! CA-CA clash (3.13A) between residues ARG51 and ILE165 # Warning! Too big distance (25.07A) between residues SER60 and TYR61 # Warning! CA-CA clash (0.01A) between residues LEU84 and GLU87 # Warning! Severe CA-CA clash (0.01A) between residues LEU84 and GLU87 # Warning! CA-CA clash (0.74A) between residues ILE85 and THR88 # Warning! Severe CA-CA clash (0.74A) between residues ILE85 and THR88 # Warning! Too big distance ( 5.13A) between residues ASP86 and GLU87 # Warning! CA-CA clash (3.27A) between residues ASP86 and THR88 # Warning! CA-CA clash (0.01A) between residues VAL96 and ILE98 # Warning! Severe CA-CA clash (0.01A) between residues VAL96 and ILE98 # Warning! CA-CA clash (0.81A) between residues PRO97 and LYS99 # Warning! Severe CA-CA clash (0.81A) between residues PRO97 and LYS99 # Warning! Too big distance (15.61A) between residues THR110 and LYS111 # Warning! CA-CA clash (0.02A) between residues THR130 and THR135 # Warning! Severe CA-CA clash (0.02A) between residues THR130 and THR135 # Warning! CA-CA clash (0.65A) between residues ARG131 and ILE136 # Warning! Severe CA-CA clash (0.65A) between residues ARG131 and ILE136 # Warning! CA-CA clash (1.91A) between residues ASP132 and SER137 # Warning! Too big distance ( 8.95A) between residues THR134 and THR135 # Warning! CA-CA clash (3.16A) between residues LYS140 and GLY141 # Warning! Too big distance ( 7.17A) between residues GLY141 and LYS142 # Warning! Too big distance ( 7.26A) between residues ARG159 and LYS160 # Warning! Too big distance (13.66A) between residues PHE163 and THR164 # ERROR! Too many steric clashes in the prediction. It can not be accepted. You might consider correction and resubmission of the prediction before the target deadline. # Checking prediction geometry (DONE) # Number of Warnings: 0 # Number of Errors: 1 Case number is: 36fa7a0fa696bdb9123ee8f114f1ff0e From casp@predictioncenter.org Wed Jul 7 17:14:28 2010 X-Spam-Status: No, score=-99.9 required=3.0 tests=AWL,USER_IN_WHITELIST autolearn=no version=3.2.5 To: karplus@soe.ucsc.edu Subject: Submission ERROR for farmer@bmecluster.soe.ucsc.edu (SAM-T08-server, T0623, TS, model: 2) - SERVER From: Prediction Center Reply-To: casp@predictioncenter.org Content-type: text/plain Date: Wed, 7 Jul 2010 17:14:28 -0700 (PDT) YOUR SUBMISSION CANNOT BE ACCEPTED THE FORMAT OF YOUR PREDICTION IS NOT CORRECT Please check the format at: http://predictioncenter.org/casp9/index.cgi?page=format ########################################################## OUTPUT FROM THE VERIFICATION SERVER BELOW # Reading prediction format TS PFRMAT TS TARGET T0623 AUTHOR SAM-T08-server REMARK 6 REMARK 6 T0623 model 2 Wed Jul 7 17:14:08 2010 # Reading MODEL 2 PARENT N/A # Reading prediction format TS (DONE) # Checking the TS prediction MODEL 2 # Checking the TS prediction MODEL 2 (DONE) # MODEL index: 2 # Target name: T0623 # Total number of residues in target: 220 # Total number of residues in model: 220 # Total number of atoms in model: 1771 # Number of atoms with 1.0 occupancy: 1772 # Number of fragments in model: 1 # Number of METHOD records: 7 # No errors in format. Checking prediction geometry ... Checking prediction geometry ... # Warning! CA-CA clash (3.21A) between residues GLU8 and LYS27 # Warning! CA-CA clash (1.32A) between residues SER9 and LYS27 # Warning! Severe CA-CA clash (1.32A) between residues SER9 and LYS27 # Warning! CA-CA clash (2.72A) between residues SER9 and ARG28 # Warning! CA-CA clash (3.18A) between residues ILE10 and ILE25 # Warning! CA-CA clash (3.08A) between residues ILE10 and LYS27 # Warning! CA-CA clash (2.35A) between residues ILE11 and HIS26 # Warning! CA-CA clash (3.38A) between residues LYS12 and ARG28 # Warning! CA-CA clash (0.02A) between residues MET21 and PHE29 # Warning! Severe CA-CA clash (0.02A) between residues MET21 and PHE29 # Warning! CA-CA clash (1.36A) between residues HIS22 and TYR30 # Warning! Severe CA-CA clash (1.36A) between residues HIS22 and TYR30 # Warning! CA-CA clash (1.82A) between residues GLY24 and ALA34 # Warning! Severe CA-CA clash (1.82A) between residues GLY24 and ALA34 # Warning! Too big distance (17.97A) between residues ARG28 and PHE29 # Warning! Too big distance ( 7.02A) between residues ILE58 and ASP59 # Warning! CA-CA clash (0.02A) between residues GLY69 and LYS84 # Warning! Severe CA-CA clash (0.02A) between residues GLY69 and LYS84 # Warning! CA-CA clash (1.20A) between residues THR70 and ASP85 # Warning! Severe CA-CA clash (1.20A) between residues THR70 and ASP85 # Warning! CA-CA clash (1.97A) between residues ILE71 and THR86 # Warning! CA-CA clash (2.72A) between residues HIS72 and THR86 # Warning! CA-CA clash (3.19A) between residues HIS72 and THR87 # Warning! CA-CA clash (0.03A) between residues ASP76 and LYS88 # Warning! Severe CA-CA clash (0.03A) between residues ASP76 and LYS88 # Warning! CA-CA clash (1.68A) between residues GLU77 and THR89 # Warning! Severe CA-CA clash (1.68A) between residues GLU77 and THR89 # Warning! Too big distance (20.33A) between residues VAL83 and LYS84 # Warning! CA-CA clash (3.29A) between residues ASP85 and SER92 # Warning! Too big distance (10.98A) between residues THR87 and LYS88 # Warning! CA-CA clash (2.82A) between residues TYR93 and ARG94 # Warning! CA-CA clash (0.01A) between residues LYS115 and ASP121 # Warning! Severe CA-CA clash (0.01A) between residues LYS115 and ASP121 # Warning! CA-CA clash (0.77A) between residues ASP116 and GLY122 # Warning! Severe CA-CA clash (0.77A) between residues ASP116 and GLY122 # Warning! CA-CA clash (3.22A) between residues SER117 and GLY122 # Warning! CA-CA clash (1.09A) between residues SER117 and TYR123 # Warning! Severe CA-CA clash (1.09A) between residues SER117 and TYR123 # Warning! CA-CA clash (1.48A) between residues LYS118 and LEU124 # Warning! Severe CA-CA clash (1.48A) between residues LYS118 and LEU124 # Warning! CA-CA clash (3.15A) between residues LYS118 and ASN125 # Warning! CA-CA clash (2.30A) between residues TRP119 and ASN125 # Warning! Too big distance ( 9.42A) between residues ASN120 and ASP121 # Warning! CA-CA clash (2.47A) between residues ASN120 and ASN125 # Warning! CA-CA clash (2.77A) between residues ASN120 and ARG126 # Warning! Too big distance ( 9.76A) between residues THR131 and ASN132 # Warning! Too big distance (16.12A) between residues ASN136 and PRO137 # Warning! Too big distance ( 9.23A) between residues VAL154 and GLY155 # Warning! Too big distance (11.59A) between residues LYS158 and GLU159 # Warning! CA-CA clash (0.68A) between residues LEU172 and GLN205 # Warning! Severe CA-CA clash (0.68A) between residues LEU172 and GLN205 # Warning! CA-CA clash (2.16A) between residues SER174 and MET206 # Warning! CA-CA clash (2.12A) between residues GLN175 and MET206 # Warning! CA-CA clash (1.90A) between residues GLN175 and ASP207 # Warning! CA-CA clash (2.36A) between residues GLN176 and LYS208 # Warning! CA-CA clash (1.49A) between residues GLN176 and ASP209 # Warning! Severe CA-CA clash (1.49A) between residues GLN176 and ASP209 # Warning! CA-CA clash (2.47A) between residues GLY177 and ASP209 # Warning! CA-CA clash (2.65A) between residues GLY177 and MET210 # ERROR! Too many steric clashes in the prediction. It can not be accepted. You might consider correction and resubmission of the prediction before the target deadline. # Checking prediction geometry (DONE) # Number of Warnings: 0 # Number of Errors: 1 Case number is: b712131204d839e25ed5014e360b1f70