# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1hlvA	131	1.357	a.4.1.7,a.4.1.7	65854,65855
2croA	71	2.673	a.35.1.2	17038
3f6wA	83	3.660		
2ictA	94	3.810	a.35.1.3	147605
1lmb3	92	6.764		
1ic8A	194	7.636	a.4.1.1,a.35.1.1	76740,76741
1r69A	69	8.710	a.35.1.2	17028
1r69	69	11.22		
3ivpA	126	13.90		
1neqA	74	18.23	a.35.1.2	17063
1lliA	92	18.37	a.35.1.2	17025
1orc	71	18.47		
2k9qA	77	18.62		
3fyaA	99	19.19		
2ef8A	84	19.40		
5croA	66	20.16	a.35.1.2	17044
2ebyA	113	20.61		
3eusA	86	20.63		
1azoA	232	21.75	c.52.1.14	33329
3g5gA	99	22.08		
1b0nA	111	22.73	a.34.1.1,a.35.1.3	17001,17064
2cw1A	65	23.46	k.46.1.1	130918
2b5aA	77	25.29	a.35.1.3	127882
3cecA	104	27.23		
2cro	71	30.13		
1utxA	66	30.59	a.35.1.3	108034
1bw6A	56	31.38	a.4.1.7	16052
2hftA	218	39.24	b.1.2.1,b.1.2.1	21951,21952
2a4hA	126	41.15	c.47.1.23	126155
3kz3A	80	41.61		
3i71A	68	41.79		
3b7hA	78	42.66		
2z0dA	357	42.95	d.3.1.22	145769
1xqwA	293	44.19		
3kyoA	273	44.28		
168lA	164	45.18	d.2.1.3	36975
2bnmA	198	45.25	a.35.1.3,b.82.1.10	128835,128836
1pwjA	89	45.54	d.39.1.1	95228
1xcgA	368	47.47	a.87.1.1,b.55.1.1	115120,115121
3bs3A	76	48.09		
1xjuA	163	50.03	d.2.1.3	115394
3hdfA	140	50.25		
1y0uA	96	50.52	a.4.5.5	116310
2ct7A	86	52.29	g.44.1.4	130791
1dgkN	917	52.29	c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3	33487,33488,33489,33490
1y9qA	192	54.99	a.35.1.8,b.82.1.15	116592,116593
1c9kA	180	55.07	c.37.1.11	32363
1x04A	230	55.28	a.238.1.1	121542
3ci7A	58	56.58		
2jvlA	107	63.18		
3bwaA	276	65.21	b.1.1.2,d.19.1.1	155683,155684
1y7yA	74	65.75	a.35.1.3	122729
2fjlA	150	67.38	b.55.1.1	133611
3mv2A	325	68.49		
1re6A	94	68.90	d.39.1.1	97320
1orcA	71	70.52	a.35.1.2	17054
1rhwA	89	72.31	d.39.1.1	97490
2zjxA	58	74.05		
2yviA	111	76.63		
1mtzA	293	87.74	c.69.1.7	79467
2fjrA	189	87.92