# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1hlvA	131	2.936	a.4.1.7,a.4.1.7	65854,65855
3f6wA	83	5.258		
2ictA	94	6.643	a.35.1.3	147605
2croA	71	7.984	a.35.1.2	17038
1lmb3	92	8.165		
1ic8A	194	11.64	a.4.1.1,a.35.1.1	76740,76741
1neqA	74	17.95	a.35.1.2	17063
1lliA	92	21.68	a.35.1.2	17025
1azoA	232	23.83	c.52.1.14	33329
1r69	69	24.70		
1orc	71	25.15		
1r69A	69	26.21	a.35.1.2	17028
5croA	66	27.06	a.35.1.2	17044
2a4hA	126	31.77	c.47.1.23	126155
3ivpA	126	32.91		
3eusA	86	34.12		
2k9qA	77	34.57		
1xjuA	163	35.18	d.2.1.3	115394
2cw1A	65	36.86	k.46.1.1	130918
1xcgA	368	37.64	a.87.1.1,b.55.1.1	115120,115121
3hdfA	140	38.14		
2hftA	218	38.26	b.1.2.1,b.1.2.1	21951,21952
3fyaA	99	39.95		
2b5aA	77	42.46	a.35.1.3	127882
3g5gA	99	43.38		
3ci7A	58	44.07		
2ef8A	84	44.65		
2ebyA	113	45.46		
3kyoA	273	49.52		
1tuzA	118	50.76	a.39.1.7	112670
1bw6A	56	53.82	a.4.1.7	16052
2zjxA	58	54.61		
1utxA	66	54.73	a.35.1.3	108034
2ct7A	86	55.67	g.44.1.4	130791
3kz3A	80	56.56		
1xqwA	293	58.24		
1b0nA	111	60.15	a.34.1.1,a.35.1.3	17001,17064
3mv2A	325	60.85		
2z0dA	357	62.73	d.3.1.22	145769
2fjlA	150	63.94	b.55.1.1	133611
2jvlA	107	65.31		
1re6A	94	65.37	d.39.1.1	97320
3cecA	104	65.87		
1rhwA	89	70.51	d.39.1.1	97490
168lA	164	71.35	d.2.1.3	36975
3i71A	68	72.28		
2bnmA	198	72.86	a.35.1.3,b.82.1.10	128835,128836
3bwaA	276	73.31	b.1.1.2,d.19.1.1	155683,155684
1pwjA	89	74.71	d.39.1.1	95228
1x04A	230	79.60	a.238.1.1	121542
3b7hA	78	81.08