# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1hlvA	131	1.647	a.4.1.7,a.4.1.7	65854,65855
3f6wA	83	4.337		
2croA	71	6.486	a.35.1.2	17038
2ictA	94	10.72	a.35.1.3	147605
1ic8A	194	18.24	a.4.1.1,a.35.1.1	76740,76741
1lmb3	92	19.40		
3ivpA	126	20.01		
1r69A	69	20.67	a.35.1.2	17028
1dgkN	917	23.82	c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3	33487,33488,33489,33490
1r69	69	24.98		
3fyaA	99	25.07		
5croA	66	25.79	a.35.1.2	17044
1orc	71	28.42		
2k9qA	77	31.45		
1lliA	92	31.70	a.35.1.2	17025
1b0nA	111	32.27	a.34.1.1,a.35.1.3	17001,17064
3g5gA	99	35.82		
2ebyA	113	35.95		
3eusA	86	36.51		
1xjuA	163	37.36	d.2.1.3	115394
2ef8A	84	38.71		
1utxA	66	39.23	a.35.1.3	108034
3cecA	104	42.64		
3i71A	68	46.53		
3bs3A	76	47.07		
168lA	164	47.99	d.2.1.3	36975
2b5aA	77	48.83	a.35.1.3	127882
1bw6A	56	49.89	a.4.1.7	16052
2cro	71	49.92		
3kz3A	80	50.64		
1xcgA	368	51.24	a.87.1.1,b.55.1.1	115120,115121
2cw1A	65	51.30	k.46.1.1	130918
3hdfA	140	51.56		
1tuzA	118	56.22	a.39.1.7	112670
2hftA	218	60.59	b.1.2.1,b.1.2.1	21951,21952
2kj8A	118	69.00		
1nz0A	118	69.39	d.14.1.2	86433
3ci7A	58	70.39		
176lA	164	71.12	d.2.1.3	36942
1neqA	74	71.43	a.35.1.2	17063
2bnmA	198	73.20	a.35.1.3,b.82.1.10	128835,128836
2zjxA	58	75.27		
1sx7A	164	75.27	d.2.1.3	112140
3b7hA	78	77.14		
2a4hA	126	81.24	c.47.1.23	126155
1xqwA	293	81.77		
1azoA	232	82.86	c.52.1.14	33329
1a6bB	40	83.41	g.40.1.1	45172
3bwgA	239	89.64	a.4.5.6,d.190.1.2	155693,155694