# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1hlvA	131	1.578	a.4.1.7,a.4.1.7	65854,65855
3f6wA	83	4.222		
2croA	71	5.895	a.35.1.2	17038
2ictA	94	8.484	a.35.1.3	147605
1r69	69	15.21		
1ic8A	194	19.02	a.4.1.1,a.35.1.1	76740,76741
1r69A	69	19.76	a.35.1.2	17028
1lmb3	92	24.15		
5croA	66	24.85	a.35.1.2	17044
3ivpA	126	26.25		
1orc	71	27.73		
3fyaA	99	29.01		
1b0nA	111	31.14	a.34.1.1,a.35.1.3	17001,17064
2k9qA	77	32.68		
2ef8A	84	34.04		
3eusA	86	35.73		
1utxA	66	36.55	a.35.1.3	108034
3g5gA	99	38.62		
1bw6A	56	39.03	a.4.1.7	16052
3bs3A	76	39.36		
1lliA	92	39.45	a.35.1.2	17025
2ebyA	113	39.92		
3cecA	104	40.89		
1xjuA	163	42.84	d.2.1.3	115394
3kz3A	80	44.02		
1dgkN	917	49.22	c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3	33487,33488,33489,33490
2cro	71	49.59		
2b5aA	77	49.86	a.35.1.3	127882
1c9kA	180	50.84	c.37.1.11	32363
3i71A	68	51.56		
168lA	164	52.12	d.2.1.3	36975
3hdfA	140	54.14		
2cw1A	65	55.63	k.46.1.1	130918
1tuzA	118	56.06	a.39.1.7	112670
2kj8A	118	58.66		
1xcgA	368	61.79	a.87.1.1,b.55.1.1	115120,115121
2hftA	218	62.03	b.1.2.1,b.1.2.1	21951,21952
1azoA	232	64.91	c.52.1.14	33329
1y0uA	96	68.48	a.4.5.5	116310
2a4hA	126	69.28	c.47.1.23	126155
2bnmA	198	70.50	a.35.1.3,b.82.1.10	128835,128836
1nz0A	118	74.07	d.14.1.2	86433
2ct7A	86	74.56	g.44.1.4	130791
2z0dA	357	74.98	d.3.1.22	145769
1y7yA	74	76.13	a.35.1.3	122729
176lA	164	77.42	d.2.1.3	36942
3ci7A	58	79.76		
1sx7A	164	82.57	d.2.1.3	112140
1neqA	74	83.47	a.35.1.2	17063
1xqwA	293	83.58		
1pwjA	89	84.54	d.39.1.1	95228
3b7hA	78	84.81		
3bwgA	239	86.52	a.4.5.6,d.190.1.2	155693,155694
2zjxA	58	89.24