# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ictA	94	2.676	a.35.1.3	147605
1hlvA	131	2.742	a.4.1.7,a.4.1.7	65854,65855
3f6wA	83	3.419		
1lmb3	92	3.864		
2croA	71	5.440	a.35.1.2	17038
1ic8A	194	10.27	a.4.1.1,a.35.1.1	76740,76741
1lliA	92	11.94	a.35.1.2	17025
1r69A	69	15.57	a.35.1.2	17028
1r69	69	17.71		
3eusA	86	18.32		
3hdfA	140	20.52		
3ivpA	126	20.92		
2b5aA	77	22.43	a.35.1.3	127882
3fyaA	99	24.52		
3g5gA	99	26.33		
2ef8A	84	30.22		
5croA	66	30.35	a.35.1.2	17044
2bnmA	198	30.83	a.35.1.3,b.82.1.10	128835,128836
1orc	71	30.88		
1xjuA	163	30.99	d.2.1.3	115394
2ebyA	113	31.87		
2k9qA	77	33.84		
2cw1A	65	34.36	k.46.1.1	130918
1azoA	232	35.05	c.52.1.14	33329
3b7hA	78	40.73		
1utxA	66	41.12	a.35.1.3	108034
2a4hA	126	42.10	c.47.1.23	126155
1b0nA	111	44.67	a.34.1.1,a.35.1.3	17001,17064
2jvlA	107	46.63		
1bw6A	56	49.46	a.4.1.7	16052
3cecA	104	51.67		
1neqA	74	53.16	a.35.1.2	17063
2hftA	218	54.91	b.1.2.1,b.1.2.1	21951,21952
1dgkN	917	58.01	c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3	33487,33488,33489,33490
3ci7A	58	61.37		
3bs3A	76	63.67		
1x04A	230	66.74	a.238.1.1	121542
3mv2A	325	68.82		
3kz3A	80	69.43		
1tuzA	118	70.99	a.39.1.7	112670
1xqwA	293	73.00		
3kyoA	273	74.81		
1y7yA	74	75.28	a.35.1.3	122729
1pwjA	89	76.57	d.39.1.1	95228
2zjxA	58	77.75		
2cro	71	78.49		
2anxA	146	79.07		
1a6bB	40	83.72	g.40.1.1	45172
2yviA	111	84.72		
3f52A	117	87.47		
1orcA	71	88.73	a.35.1.2	17054