# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hlvA 131 2.030 a.4.1.7,a.4.1.7 65854,65855 1cll 148 4.041 3h9eA 346 4.551 1qs7A 145 4.555 k.21.1.1 88373 1lmb3 92 5.200 3cmcO 334 5.301 c.2.1.3,d.81.1.1 156800,156801 2ictA 94 5.378 a.35.1.3 147605 3f6wA 83 5.785 1qtxA 148 6.428 k.21.1.1 88375 1exrA 148 7.210 a.39.1.5 17299 1l8aA 886 7.847 c.36.1.10,c.36.1.6,c.48.1.1 73677,73678,73679 2croA 71 8.324 a.35.1.2 17038 2hftA 218 9.610 b.1.2.1,b.1.2.1 21951,21952 1nb8A 353 11.57 d.3.1.9 80385 3fz0A 360 12.50 2a4hA 126 12.51 c.47.1.23 126155 2k9qA 77 13.93 1pwjA 89 15.63 d.39.1.1 95228 2c5sA 413 16.46 c.26.2.6,d.308.1.1 129950,129951 1cyx 205 16.81 1p9aG 290 18.79 c.10.2.7 87990 1sbpA 310 19.35 c.94.1.1 35760 1lliA 92 20.60 a.35.1.2 17025 3c5pA 197 20.67 2gduA 504 20.88 b.71.1.1,c.1.8.1 135032,135033 2a14A 263 22.22 c.66.1.15 125972 3kh0A 140 24.03 1crwG 333 24.06 c.2.1.3,d.81.1.1 30026,39941 1lxdA 100 25.73 d.15.1.5 37624 3fyaA 99 26.54 3lx9A 404 27.17 1r69A 69 27.28 a.35.1.2 17028 1ofgA 381 27.40 c.2.1.3,d.81.1.5 30064,39979 1r69 69 28.66 2cfaA 217 29.68 3iv0A 481 31.23 3ivpA 126 31.51 1pwkA 91 33.61 d.39.1.1 95229 1h5uA 842 33.93 c.87.1.4 60655 1thtA 305 34.29 c.69.1.13 34711 2ef8A 84 34.51 3g5gA 99 35.85 2b5aA 77 35.92 a.35.1.3 127882 1hv9A 456 36.14 b.81.1.4,c.68.1.5 28060,34518 2w8sA 543 36.19 1pmaA 233 36.54 d.153.1.4 41918 1rhwA 89 36.69 d.39.1.1 97490 1vrkA 148 37.06 k.21.1.1 46451 1guaB 81 37.46 d.15.1.5 37619 3bs3A 76 41.16 1zmbA 290 41.78 c.23.10.7 125355 1itxA 419 42.39 c.1.8.5,d.26.3.1 71425,71426 1b0nA 111 43.47 a.34.1.1,a.35.1.3 17001,17064 1ex0A 731 44.58 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 90465,90466,90467,90468 2cw1A 65 45.29 k.46.1.1 130918 3hn8A 296 46.20 1asyA 490 47.06 b.40.4.1,d.104.1.1 25242,40763 3eixA 296 47.11 2fhfA 1083 47.39 b.1.18.2,b.1.18.2,b.3.1.3,b.71.1.1,c.1.8.1 147035,147036,147037,147038,147039 1q6aA 107 50.75 a.186.1.1 95966 1ic8A 194 51.48 a.4.1.1,a.35.1.1 76740,76741 3gw2A 108 51.65 1xwwA 157 51.90 3gt5A 402 52.78 1y5iA 1246 52.81 b.52.2.2,c.81.1.1 122639,122640 1m1nA 491 52.87 c.92.2.3 78417 3d6kA 422 53.41 1ynpA 317 54.98 3hwcA 515 55.97 1w63A 618 56.54 i.23.1.1 109192 2eqkA 85 58.78 3eusA 86 58.93 1dekA 241 62.14 c.37.1.1 31842 1vr8A 142 62.31 d.312.1.1 120445 2uzpA 144 63.04 168lA 164 63.55 d.2.1.3 36975 1z6jT 211 64.05 b.1.2.1,b.1.2.1 124527,124528 3f1vA 366 64.26 1gypA 358 65.62 c.2.1.3,d.81.1.1 30004,39919 1aw2A 256 67.79 c.1.1.1 28523 2wn6A 463 68.78 1ct5A 256 69.48 c.1.6.2 28663 1dssG 333 69.61 c.2.1.3,d.81.1.1 30022,39937 2vupA 190 71.28 3b7hA 78 71.29 3h0gA 1752 71.77 3ci7A 58 72.58 2j13A 247 75.12 c.6.2.3 137934 3cecA 104 75.36 1utxA 66 75.80 a.35.1.3 108034 5croA 66 75.88 a.35.1.2 17044 2a9dA 372 76.30 b.1.18.6,d.176.1.1 126431,126432 1orc 71 77.02 2bnmA 198 77.02 a.35.1.3,b.82.1.10 128835,128836 2ct7A 86 79.69 g.44.1.4 130791 1p57A 114 79.81 d.170.1.2 94125 1j99A 293 80.70 c.37.1.5 71618 1wdcB 156 80.82 a.39.1.5 17302 1twfB 1224 81.06 e.29.1.1 112726 1w8kA 447 81.36 2kj8A 118 83.66 1lccA 51 83.87 a.35.1.5 17110 1p32A 209 84.28 d.25.1.1 38379 2o5vA 359 85.58 1dt9A 437 85.66 c.55.4.2,d.79.3.2,d.91.1.1 33738,39815,40257 1gadO 330 85.98 c.2.1.3,d.81.1.1 29950,39865 2jvlA 107 86.12 2z0dA 357 86.29 d.3.1.22 145769 3lkbA 392 88.64 2ebyA 113 89.04 3d1gA 366 89.38 d.131.1.1,d.131.1.1,d.131.1.1 157200,157201,157202 1czjA 111 89.63 a.138.1.1 19663