# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1hlvA	131	1.183	a.4.1.7,a.4.1.7	65854,65855
3f6wA	83	3.892		
2croA	71	4.024	a.35.1.2	17038
2ictA	94	4.398	a.35.1.3	147605
1lmb3	92	6.463		
1ic8A	194	8.351	a.4.1.1,a.35.1.1	76740,76741
5croA	66	15.24	a.35.1.2	17044
1orc	71	15.58		
1lliA	92	17.74	a.35.1.2	17025
3ivpA	126	19.05		
1r69A	69	20.88	a.35.1.2	17028
1xjuA	163	22.97	d.2.1.3	115394
1c9kA	180	25.33	c.37.1.11	32363
1r69	69	25.44		
2ef8A	84	25.91		
2hftA	218	26.04	b.1.2.1,b.1.2.1	21951,21952
2cw1A	65	28.21	k.46.1.1	130918
3hdfA	140	29.29		
2ebyA	113	29.65		
168lA	164	30.71	d.2.1.3	36975
3ci7A	58	30.81		
1neqA	74	33.32	a.35.1.2	17063
3eusA	86	35.38		
3kyoA	273	35.90		
1bw6A	56	37.30	a.4.1.7	16052
1sx7A	164	38.39	d.2.1.3	112140
2b5aA	77	38.70	a.35.1.3	127882
1xcgA	368	40.22	a.87.1.1,b.55.1.1	115120,115121
3g5gA	99	43.33		
1utxA	66	43.48	a.35.1.3	108034
2zjxA	58	43.55		
3kz3A	80	44.06		
2a4hA	126	44.99	c.47.1.23	126155
2k9qA	77	46.52		
1tuzA	118	46.56	a.39.1.7	112670
2jvlA	107	47.55		
1x04A	230	50.58	a.238.1.1	121542
3bwaA	276	51.19	b.1.1.2,d.19.1.1	155683,155684
3cecA	104	52.03		
3fyaA	99	52.21		
3b7hA	78	52.81		
1rhwA	89	52.94	d.39.1.1	97490
2bnmA	198	54.59	a.35.1.3,b.82.1.10	128835,128836
2cro	71	57.16		
176lA	164	58.32	d.2.1.3	36942
1b0nA	111	59.70	a.34.1.1,a.35.1.3	17001,17064
1u6pA	56	60.17	g.40.1.1	113073
3bs3A	76	60.24		
2ct7A	86	61.11	g.44.1.4	130791
3l09A	266	61.45		
1re6A	94	63.52	d.39.1.1	97320
1pwjA	89	63.59	d.39.1.1	95228
1azoA	232	68.25	c.52.1.14	33329
2fjlA	150	69.12	b.55.1.1	133611
1xqwA	293	73.25		
3i71A	68	73.49		
1dgkN	917	73.69	c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3	33487,33488,33489,33490
2pg1A	91	74.97	d.39.1.1	139684
1p5zB	263	75.15	c.37.1.1	87815
1u3aA	189	82.23	c.47.1.13	119504
1wjuA	100	88.87	d.15.1.1	114712
1orcA	71	89.82	a.35.1.2	17054