# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1hlvA	131	2.585	a.4.1.7,a.4.1.7	65854,65855
2croA	71	5.562	a.35.1.2	17038
1lmb3	92	6.221		
1sazA	381	6.284	c.55.1.2,c.55.1.2	118925,118926
1azoA	232	7.942	c.52.1.14	33329
2ictA	94	8.945	a.35.1.3	147605
3f6wA	83	9.542		
1lliA	92	10.38	a.35.1.2	17025
3l09A	266	14.59		
1ic8A	194	16.84	a.4.1.1,a.35.1.1	76740,76741
1neqA	74	17.02	a.35.1.2	17063
2ct7A	86	18.68	g.44.1.4	130791
2jvlA	107	19.32		
2cw1A	65	19.50	k.46.1.1	130918
1eqkA	102	20.52	d.17.1.2	37998
1rhwA	89	24.14	d.39.1.1	97490
5croA	66	26.41	a.35.1.2	17044
1pwjA	89	29.16	d.39.1.1	95228
1q3yA	42	29.44	g.40.1.1	104530
3kz3A	80	32.15		
2hftA	218	33.01	b.1.2.1,b.1.2.1	21951,21952
2occI	73	33.26	f.23.3.1	43523
3hdfA	140	34.49		
1orc	71	36.27		
2fv2A	268	38.32		
1dgkN	917	40.53	c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3	33487,33488,33489,33490
3fyaA	99	40.95		
1r69	69	41.63		
1r69A	69	42.75	a.35.1.2	17028
3bwgA	239	42.88	a.4.5.6,d.190.1.2	155693,155694
1re6A	94	43.08	d.39.1.1	97320
1v54I	73	44.97	f.23.3.1	100330
2anxA	146	45.63		
168lA	164	46.73	d.2.1.3	36975
1r1uA	106	46.94	a.4.5.5	104771
3cecA	104	49.21		
2a4hA	126	49.22	c.47.1.23	126155
1twfL	70	49.49	g.41.9.2	112737
176lA	164	49.99	d.2.1.3	36942
1tuzA	118	50.10	a.39.1.7	112670
3gw2A	108	50.58		
2pc8A	400	52.86		
3ez2A	398	55.05		
3g5gA	99	55.45		
1vc4A	254	57.43	c.1.2.4	100557
2b5aA	77	61.04	a.35.1.3	127882
1sx7A	164	63.79	d.2.1.3	112140
2fu4A	83	65.46		
2hqhE	25	69.96		
3i71A	68	71.42		
2b3rA	134	72.09		
1uvqB	198	73.09	b.1.1.2,d.19.1.1	100064,100065
1v2zA	111	73.80	a.186.1.1	108300
1y7yA	74	78.53	a.35.1.3	122729
1y9qA	192	80.31	a.35.1.8,b.82.1.15	116592,116593
3g1wA	305	80.86		
1u3aA	189	82.33	c.47.1.13	119504
1bqnA	558	83.94	c.55.3.1,e.8.1.2	33599,43064
2j5zA	221	84.91		
3ci7A	58	85.53		
2elhA	87	86.08		
1y0uA	96	88.23	a.4.5.5	116310
2cro	71	88.62