# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2croA	71	7.417	a.35.1.2	17038
1hlvA	131	7.925	a.4.1.7,a.4.1.7	65854,65855
3l09A	266	15.97		
1xjuA	163	17.28	d.2.1.3	115394
2hftA	218	17.62	b.1.2.1,b.1.2.1	21951,21952
2z0dA	357	17.91	d.3.1.22	145769
3f6wA	83	19.80		
2ictA	94	20.71	a.35.1.3	147605
2cw1A	65	26.56	k.46.1.1	130918
1lmb3	92	27.19		
5croA	66	27.47	a.35.1.2	17044
1orc	71	29.07		
1azoA	232	33.43	c.52.1.14	33329
1tuzA	118	35.07	a.39.1.7	112670
1ic8A	194	37.51	a.4.1.1,a.35.1.1	76740,76741
1lliA	92	48.28	a.35.1.2	17025
168lA	164	51.48	d.2.1.3	36975
2hqhE	25	53.84		
3f8mA	248	54.13		
1rhwA	89	54.48	d.39.1.1	97490
2jvlA	107	55.80		
3fyaA	99	56.35		
1c9kA	180	63.58	c.37.1.11	32363
176lA	164	64.09	d.2.1.3	36942
2pmvA	399	70.96		
1r69	69	72.51		
3ivpA	126	72.84		
3afhA	488	73.08		
1sbpA	310	73.51	c.94.1.1	35760
3fr7A	525	74.66		
2b5aA	77	76.44	a.35.1.3	127882
1p5zB	263	78.34	c.37.1.1	87815
1sx7A	164	80.07	d.2.1.3	112140
1neqA	74	81.44	a.35.1.2	17063
2cy7A	396	82.58	d.3.1.22	146431
1u3aA	189	84.90	c.47.1.13	119504
2zjxA	58	84.94		
2ebyA	113	86.99