# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1nz6A 101 1.945 a.2.3.1 86441 1uxy 340 2.469 1lkyA 77 2.602 a.60.1.1 73985 2ahqA 76 3.934 2f7kA 327 5.258 1vi9A 299 5.303 c.72.1.5 100750 3fyaA 99 5.371 2mbr 340 5.604 3g5gA 99 6.425 1lmb3 92 7.449 1uxyA 340 7.721 d.145.1.2,d.146.1.1 41748,41761 1sv0C 82 8.396 a.60.1.1 106037 1lliA 92 8.922 a.35.1.2 17025 2jvlA 107 9.135 2idoB 83 13.17 a.237.1.1 137285 1td2A 287 14.19 c.72.1.5 106765 3f52A 117 14.48 2pjpA 121 15.11 2ictA 94 15.71 a.35.1.3 147605 3ivpA 126 16.58 3fmyA 73 16.89 3fhyA 312 17.61 3bs5A 106 17.66 2mbrA 340 18.91 d.145.1.2,d.146.1.1 41749,41762 1neqA 74 19.37 a.35.1.2 17063 2bnmA 198 20.46 a.35.1.3,b.82.1.10 128835,128836 2croA 71 20.58 a.35.1.2 17038 2nq2C 253 21.81 3mv2A 325 22.34 3b7hA 78 22.48 1xqwA 293 22.64 3bs7A 78 23.38 1r69 69 24.14 1vgjA 184 25.71 1b0nA 111 26.21 a.34.1.1,a.35.1.3 17001,17064 2e1fA 103 27.94 a.60.8.1 131964 2e8oA 103 28.29 1kw4A 89 28.60 a.60.1.2 73077 2b5aA 77 29.15 a.35.1.3 127882 1g0uG 252 32.57 d.153.1.4 41952 2prrA 197 32.89 a.152.1.3 149803 3cecA 104 35.41 1ji7A 89 37.04 a.60.1.1 71682 3gvvA 367 38.74 3kz3A 80 39.18 2r1jL 68 40.31 a.35.1.2 151525 1xg1A 67 40.78 a.4.1.4 121973 1orc 71 40.81 1dwkA 156 40.98 a.35.1.4,d.72.1.1 17075,39606 2ef8A 84 43.01 1rioA 98 43.85 a.35.1.2 97513 1x58A 62 44.13 a.4.1.1 121705 1b8iB 63 44.35 a.4.1.1 16011 3lwaA 183 47.54 3f6wA 83 47.90 1lhpA 312 48.28 c.72.1.5 77960 1zpyA 95 49.85 a.25.1.5 125479 1ic8A 194 50.32 a.4.1.1,a.35.1.1 76740,76741 1orcA 71 50.51 a.35.1.2 17054 2guzA 71 51.67 2ebyA 113 52.39 3dxeA 140 53.66 3ihtA 174 53.82 3hsiA 458 54.40 2f3nA 76 54.78 a.60.1.2 132885 1uroA 367 56.81 c.1.22.1 29675 1sv0A 85 57.12 a.60.1.1 106035 1h8aC 128 57.95 a.4.1.3,a.4.1.3 65731,65732 1mnmC 87 59.99 a.4.1.1 15983 2zdbA 195 60.53 1k61A 60 60.67 a.4.1.1 77270 2qsaA 109 62.36 1r69A 69 63.57 a.35.1.2 17028 3gw0A 367 63.75 3gv6A 58 64.33 2qgzA 308 66.25 1utxA 66 67.01 a.35.1.3 108034 1adrA 76 67.38 a.35.1.2 17042 1y7yA 74 67.70 a.35.1.3 122729 1b79A 119 68.19 a.81.1.1 18451 3cngA 189 69.33 2cro 71 69.91 2prdA 174 70.22 b.40.5.1 25435 1r3sA 367 70.36 c.1.22.1 96963 1rp4A 389 70.88 a.227.1.1 105027 2qs8A 418 74.11 b.92.1.9,c.1.9.18 151311,151312 1fb6A 105 74.25 c.47.1.1 32739 2qwoB 92 74.59 2e0qA 104 74.72 2ou6A 190 75.72 a.213.1.2 149020 1l3eB 101 76.47 g.53.1.1 73536 3c9qA 205 76.88 3bs5B 80 77.21 3ia7A 402 80.27 1kijA 390 82.62 d.14.1.3,d.122.1.2 72514,72515 2xahB 482 82.68 1b55A 169 85.30 b.55.1.1 26963 1btkA 169 86.47 b.55.1.1 26959 1y9qA 192 86.81 a.35.1.8,b.82.1.15 116592,116593 2aboA 136 89.01 f.1.4.1 126527 2co5A 99 89.12 a.4.5.48 146418 2dkzA 84 89.30 2vwaA 101 89.56 3gw3A 367 89.65