Best Alignments for T0643

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
1y9qA	2.7472e+00	1y9qA/T0643-1y9qA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.35.1.8 b.82.1.15
3ivpA	2.8030e+00	3ivpA/T0643-3ivpA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2ictA	2.8565e+00	2ictA/T0643-2ictA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.35.1.3
2jvlA	5.6494e+00	2jvlA/T0643-2jvlA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2bnmA	7.1322e+00	2bnmA/T0643-2bnmA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.35.1.3 b.82.1.10
1lliA	7.5409e+00	1lliA/T0643-1lliA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.35.1.2
3cecA	7.7239e+00	3cecA/T0643-3cecA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1r69A	8.2217e+00	1r69A/T0643-1r69A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.35.1.2
2ebyA	1.1067e+01	2ebyA/T0643-2ebyA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2r1jL	1.1925e+01	2r1jL/T0643-2r1jL-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.35.1.2
2cro	1.2843e+01	2cro/T0643-2cro-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3b7hA	1.3216e+01	3b7hA/T0643-3b7hA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2croA	1.4053e+01	2croA/T0643-2croA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.35.1.2
1b0nA	1.4479e+01	1b0nA/T0643-1b0nA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.34.1.1 a.35.1.3
2cw1A	1.6546e+01	2cw1A/T0643-2cw1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	k.46.1.1
1adrA	1.6607e+01	1adrA/T0643-1adrA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.35.1.2
2ef8A	2.1653e+01	2ef8A/T0643-2ef8A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1y7yA	2.1750e+01	1y7yA/T0643-1y7yA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.35.1.3
1r69	2.4107e+01	1r69/T0643-1r69-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1neqA	2.7123e+01	1neqA/T0643-1neqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.35.1.2

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001