# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3ivpA	126	2.240		
2ictA	94	2.680	a.35.1.3	147605
1y9qA	192	2.738	a.35.1.8,b.82.1.15	116592,116593
1lliA	92	2.944	a.35.1.2	17025
2bnmA	198	5.287	a.35.1.3,b.82.1.10	128835,128836
1neqA	74	6.854	a.35.1.2	17063
1lmb3	92	7.165		
2jvlA	107	8.612		
1r69A	69	9.349	a.35.1.2	17028
1ic8A	194	9.888	a.4.1.1,a.35.1.1	76740,76741
2cw1A	65	9.98	k.46.1.1	130918
2ebyA	113	11.49		
3cecA	104	12.32		
3b7hA	78	14.16		
1b0nA	111	14.21	a.34.1.1,a.35.1.3	17001,17064
2r7rA	1095	14.72		
2r1jL	68	15.28	a.35.1.2	151525
2croA	71	18.07	a.35.1.2	17038
2p63A	56	18.82		
2cro	71	18.86		
3brvA	48	19.57		
3kz3A	80	19.86		
2z0dA	357	20.05	d.3.1.22	145769
1edg	380	20.87		
1orcA	71	22.79	a.35.1.2	17054
1lyvA	306	22.91	c.45.1.2	74348
1adrA	76	23.13	a.35.1.2	17042
2ef8A	84	23.20		
2ovgA	66	24.88		
1orc	71	27.28		
1rioA	98	32.94	a.35.1.2	97513
1y7yA	74	34.13	a.35.1.3	122729
1utxA	66	37.56	a.35.1.3	108034
1r69	69	37.63		
3k2kA	403	42.12		
2pijA	67	43.23		
2elhA	87	44.49		
3f6wA	83	45.56		
3ibvA	980	54.07		
2zjdA	130	55.22	d.15.1.3	154484
1m3iA	471	56.30	f.9.1.1	91178
1xjuA	163	57.35	d.2.1.3	115394
1pfoA	500	57.87	f.9.1.1	43826
1tuzA	118	59.60	a.39.1.7	112670
2b5aA	77	60.14	a.35.1.3	127882
3hxlA	446	64.73		
3eusA	86	65.90		
1jkoC	52	67.23	a.4.1.2	66809
1ki1B	352	68.14	a.87.1.1,b.55.1.1	72497,72498
1azo	232	70.65		
2wmyA	150	75.44		
3ge9A	255	80.55		
2kd1A	118	81.28		
1wjuA	100	88.56	d.15.1.1	114712
2owrA	218	88.57		
2hqhE	25	89.55