# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1lliA	92	0.6611	a.35.1.2	17025
2ictA	94	0.7869	a.35.1.3	147605
1y9qA	192	0.8799	a.35.1.8,b.82.1.15	116592,116593
3ivpA	126	0.8889		
2jvlA	107	1.647		
2bnmA	198	1.956	a.35.1.3,b.82.1.10	128835,128836
1lmb3	92	2.086		
1ic8A	194	2.132	a.4.1.1,a.35.1.1	76740,76741
1r69A	69	2.288	a.35.1.2	17028
1neqA	74	2.359	a.35.1.2	17063
2ebyA	113	2.799		
3b7hA	78	3.151		
2r1jL	68	3.625	a.35.1.2	151525
3cecA	104	3.724		
3kz3A	80	4.032		
2cw1A	65	4.375	k.46.1.1	130918
1b0nA	111	4.661	a.34.1.1,a.35.1.3	17001,17064
1adrA	76	4.719	a.35.1.2	17042
2croA	71	4.884	a.35.1.2	17038
2cro	71	4.924		
2ef8A	84	5.113		
1rioA	98	5.249	a.35.1.2	97513
1y7yA	74	6.990	a.35.1.3	122729
2p63A	56	7.764		
1r69	69	9.022		
1utxA	66	9.95	a.35.1.3	108034
1lyvA	306	10.15	c.45.1.2	74348
2z0dA	357	11.27	d.3.1.22	145769
3eusA	86	13.56		
2c5qA	240	14.29		
1m3iA	471	14.47	f.9.1.1	91178
2b5aA	77	16.83	a.35.1.3	127882
3f6wA	83	17.64		
1pfoA	500	21.23	f.9.1.1	43826
1v32A	101	21.94	a.42.1.1	100277
1orcA	71	22.11	a.35.1.2	17054
2ovgA	66	22.62		
3fyaA	99	23.07		
3k2kA	403	23.88		
1orc	71	25.29		
2kd1A	118	25.92		
3g5gA	99	28.01		
3brvA	48	30.86		
1wjuA	100	31.64	d.15.1.1	114712
1xjuA	163	32.46	d.2.1.3	115394
3bd1A	79	33.52		
2r7rA	1095	36.12		
2elhA	87	36.42		
1jkoC	52	39.52	a.4.1.2	66809
2zjdA	130	40.92	d.15.1.3	154484
2pijA	67	46.26		
1tuzA	118	46.38	a.39.1.7	112670
3d0fA	106	46.52		
1wudA	89	49.77	a.60.8.1	121283
2ek0A	90	52.45		
1u58A	253	53.30	b.1.1.2,d.19.1.1	144387,144388
1y14B	171	54.46	b.40.4.5,d.230.1.1	116323,116324
3kynA	275	56.74		
1fseA	74	57.49	a.4.6.2	60000
2rkhA	180	59.47		
3guwA	261	59.76		
1a1oA	276	62.17	b.1.1.2,d.19.1.1	20751,38265
1aoyA	78	63.26	a.4.5.3	16087
2hqhE	25	64.69		
1s3aA	102	65.82	c.47.1.22	118847
3f52A	117	66.63		
2a1jA	63	66.91	a.60.2.5	126000
3bs3A	76	67.24		
2uytA	489	67.45		
2afbA	351	69.38	c.72.1.1	126674
3hdfA	140	72.96		
1pfo	500	76.57		
1vjlA	164	77.97	d.257.1.1	100822
2wmyA	150	78.23		
1z1bA	356	79.64	d.10.1.4,d.163.1.1	124346,124347
2cy7A	396	80.42	d.3.1.22	146431
1ki1B	352	81.50	a.87.1.1,b.55.1.1	72497,72498
3bwaA	276	81.66	b.1.1.2,d.19.1.1	155683,155684
1zs4A	83	82.69	a.35.1.9	125585
1edg	380	83.15		
3il0A	131	85.40		
1nh1A	330	87.79	e.45.1.1	91871
1i7kA	179	88.29	d.20.1.1	61889