# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3ivpA	126	6.759		
2ictA	94	7.248	a.35.1.3	147605
1y9qA	192	7.689	a.35.1.8,b.82.1.15	116592,116593
1lliA	92	12.36	a.35.1.2	17025
2bnmA	198	12.77	a.35.1.3,b.82.1.10	128835,128836
2jvlA	107	18.01		
1r69A	69	18.14	a.35.1.2	17028
1b0nA	111	19.05	a.34.1.1,a.35.1.3	17001,17064
3cecA	104	20.81		
1lmb3	92	22.39		
2z0dA	357	25.27	d.3.1.22	145769
2ebyA	113	25.51		
2r1jL	68	25.90	a.35.1.2	151525
2cro	71	33.91		
2croA	71	34.82	a.35.1.2	17038
1adrA	76	36.36	a.35.1.2	17042
3brvA	48	36.79		
2cw1A	65	38.29	k.46.1.1	130918
1utxA	66	38.55	a.35.1.3	108034
2ef8A	84	40.15		
2ovgA	66	43.59		
3ge9A	255	44.06		
3kz3A	80	46.37		
1ki1B	352	47.48	a.87.1.1,b.55.1.1	72497,72498
1r69	69	48.87		
3b7hA	78	50.77		
1orcA	71	55.78	a.35.1.2	17054
1tuzA	118	56.34	a.39.1.7	112670
1y7wA	291	61.28		
3f6wA	83	66.20		
1neqA	74	66.39	a.35.1.2	17063
1v32A	101	66.52	a.42.1.1	100277
1orc	71	66.65		
2uytA	489	66.93		
1y7yA	74	69.90	a.35.1.3	122729
2p63A	56	71.32		
2pijA	67	75.58		
3hdfA	140	81.87		
1nkgA	508	88.30	b.3.1.2,b.18.1.25,b.30.5.10	103859,103860,103861