# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3ivpA 126 1.883 1lyvA 306 3.874 c.45.1.2 74348 2ictA 94 4.142 a.35.1.3 147605 1lliA 92 5.310 a.35.1.2 17025 2bnmA 198 9.279 a.35.1.3,b.82.1.10 128835,128836 2a4hA 126 9.516 c.47.1.23 126155 2z0dA 357 9.783 d.3.1.22 145769 3b7hA 78 9.99 3h2yA 368 10.34 1us0A 316 10.67 c.1.7.1 99850 1nkgA 508 10.73 b.3.1.2,b.18.1.25,b.30.5.10 103859,103860,103861 1b0nA 111 10.91 a.34.1.1,a.35.1.3 17001,17064 1exrA 148 11.01 a.39.1.5 17299 1lmb3 92 11.07 1mqeA 207 11.47 d.113.1.1 91394 1j7xA 302 14.00 c.14.1.2 66425 2jvlA 107 14.61 1y7wA 291 16.49 2wjaA 168 17.37 1r69A 69 18.04 a.35.1.2 17028 2cw1A 65 21.09 k.46.1.1 130918 2vxpA 132 21.62 1rioA 98 22.20 a.35.1.2 97513 3cecA 104 23.22 2wocA 299 23.66 3ggrB 286 24.11 1l0wA 580 24.69 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 1w5dA 462 24.87 e.3.1.3 120642 2ef8A 84 25.76 3brvA 48 26.86 3hvnA 508 26.93 2ebyA 113 27.39 1j99A 293 27.80 c.37.1.5 71618 2nsfA 261 28.01 a.213.1.4,d.106.1.2 148386,148387 1so7A 382 28.77 b.68.1.1 112106 1bgvA 449 29.33 c.2.1.7,c.58.1.1 30217,33865 2croA 71 30.48 a.35.1.2 17038 3mfdA 334 31.43 2wmyA 150 31.52 2cro 71 32.52 3cmcO 334 32.82 c.2.1.3,d.81.1.1 156800,156801 1j96A 323 33.13 c.1.7.1 71616 3k2kA 403 34.32 2r1jL 68 34.34 a.35.1.2 151525 1a3c 181 36.35 3e7eA 365 37.14 2jlnA 501 37.75 1wp1A 474 38.72 f.5.1.1 114778 2qtcA 886 39.08 c.36.1.6,c.36.1.10,c.48.1.1 151343,151344,151345 2e6mA 208 39.69 3kz3A 80 39.93 2qlzA 232 40.82 1p32A 209 43.56 d.25.1.1 38379 1afwA 393 43.57 c.95.1.1,c.95.1.1 35900,35901 3f6wA 83 43.75 1yfsA 465 45.28 a.203.1.1,d.104.1.1 123088,123089 1y7yA 74 45.32 a.35.1.3 122729 1adrA 76 47.42 a.35.1.2 17042 1lzjA 292 47.69 c.68.1.9 74352 1a3cA 181 48.00 c.61.1.1 34095 1jx6A 342 48.21 c.93.1.1 67406 2qgmA 445 49.62 c.150.1.3 150781 1aw2A 256 50.91 c.1.1.1 28523 3d0fA 106 51.15 3eusA 86 51.54 3fz0A 360 51.94 1gvkB 240 52.72 b.47.1.2 70610 2ek0A 90 53.07 1y9qA 192 53.93 a.35.1.8,b.82.1.15 116592,116593 1ct9A 553 58.75 c.26.2.1,d.153.1.1 31616,41834 2c5qA 240 59.75 1uteA 313 61.00 d.159.1.1 42078 1yozA 116 61.30 a.253.1.1 123796 2iutA 574 61.85 2b4vA 468 63.41 a.160.1.4,d.218.1.10 127864,127865 1ojjA 402 64.03 b.29.1.10 93130 2w2xC 124 65.94 1sv0C 82 66.73 a.60.1.1 106037 2e58A 308 67.26 1neqA 74 67.48 a.35.1.2 17063 2eklA 313 67.82 1h5uA 842 68.50 c.87.1.4 60655 1mo9A 523 69.22 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 2oqeA 660 69.75 b.30.2.1,d.17.2.1,d.17.2.1 139222,139223,139224 1v33A 366 70.40 d.264.1.1 100278 3h0gD 135 71.08 1f60B 94 71.09 d.58.12.1 39307 1qtxA 148 71.37 k.21.1.1 88375 2vhfA 374 71.80 1s1pA 331 71.92 c.1.7.1 98350 2cy7A 396 72.93 d.3.1.22 146431 1rtuA 114 73.52 d.1.1.4 36139 3guwA 261 74.09 1ohvA 472 75.58 c.67.1.4 93031 1r69 69 76.10 3boqA 160 80.82 3ii9A 396 81.02 2b5aA 77 81.88 a.35.1.3 127882 3thiA 371 83.37 c.94.1.1 35792 3becA 363 83.67 b.105.1.1,e.3.1.1 155181,155182 2imqX 282 84.23 d.151.1.2 147733 2z0dB 125 85.04 d.15.1.3 140096 2eyuA 261 85.46 1r5bA 467 86.51 b.43.3.1,b.44.1.1,c.37.1.8 104803,104804,104805 3c5pA 197 86.63 1eqfA 280 87.97 a.29.2.1,a.29.2.1 16972,16973 1wwkA 307 88.33