# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3ivpA	126	4.908		
2ictA	94	5.716	a.35.1.3	147605
1y9qA	192	6.747	a.35.1.8,b.82.1.15	116592,116593
1lliA	92	8.477	a.35.1.2	17025
2bnmA	198	11.93	a.35.1.3,b.82.1.10	128835,128836
3b7hA	78	14.93		
1lmb3	92	17.32		
2z0dA	357	19.13	d.3.1.22	145769
1nkgA	508	21.88	b.3.1.2,b.18.1.25,b.30.5.10	103859,103860,103861
2jvlA	107	22.33		
1r69A	69	22.70	a.35.1.2	17028
3brvA	48	27.17		
1ic8A	194	28.06	a.4.1.1,a.35.1.1	76740,76741
2c5qA	240	29.04		
2ebyA	113	30.45		
1b0nA	111	30.45	a.34.1.1,a.35.1.3	17001,17064
1rioA	98	32.09	a.35.1.2	97513
2cw1A	65	34.07	k.46.1.1	130918
3cecA	104	34.67		
1lyvA	306	35.90	c.45.1.2	74348
1y7wA	291	40.11		
2cro	71	41.28		
2r1jL	68	42.24	a.35.1.2	151525
2croA	71	43.07	a.35.1.2	17038
1neqA	74	49.31	a.35.1.2	17063
1adrA	76	55.27	a.35.1.2	17042
1azo	232	56.90		
1y7yA	74	62.36	a.35.1.3	122729
3kz3A	80	64.04		
2uytA	489	64.55		
2ef8A	84	65.48		
2r7rA	1095	66.47		
1m3iA	471	66.80	f.9.1.1	91178
1pfoA	500	71.66	f.9.1.1	43826
2p63A	56	75.46		
3l6fA	182	75.79		
3hxlA	446	78.54		
3hdfA	140	78.77		
3k2kA	403	80.98		
3ge9A	255	81.46		
1v32A	101	83.37	a.42.1.1	100277
1tuzA	118	84.33	a.39.1.7	112670
1r69	69	86.13		
3d0fA	106	87.56