# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3ivpA	126	3.350		
2ictA	94	4.916	a.35.1.3	147605
1y9qA	192	5.167	a.35.1.8,b.82.1.15	116592,116593
2jvlA	107	6.495		
1lliA	92	6.549	a.35.1.2	17025
1neqA	74	10.58	a.35.1.2	17063
2bnmA	198	11.00	a.35.1.3,b.82.1.10	128835,128836
2cw1A	65	13.69	k.46.1.1	130918
1lmb3	92	14.56		
3brvA	48	16.50		
1nkgA	508	17.89	b.3.1.2,b.18.1.25,b.30.5.10	103859,103860,103861
2z0dA	357	17.98	d.3.1.22	145769
1r69A	69	18.56	a.35.1.2	17028
2ebyA	113	21.56		
1ic8A	194	23.72	a.4.1.1,a.35.1.1	76740,76741
1lyvA	306	24.52	c.45.1.2	74348
3b7hA	78	24.69		
2c5qA	240	25.07		
3cecA	104	25.42		
2r1jL	68	26.86	a.35.1.2	151525
1b0nA	111	31.40	a.34.1.1,a.35.1.3	17001,17064
2ovgA	66	32.46		
1orcA	71	32.47	a.35.1.2	17054
2p63A	56	33.28		
2r7rA	1095	35.00		
2croA	71	35.42	a.35.1.2	17038
2cro	71	35.75		
1edg	380	37.77		
1orc	71	38.38		
2ef8A	84	39.79		
1adrA	76	43.40	a.35.1.2	17042
1tuzA	118	48.35	a.39.1.7	112670
1azo	232	51.80		
1utxA	66	55.23	a.35.1.3	108034
3f6wA	83	55.98		
1y7wA	291	57.61		
1y7yA	74	58.54	a.35.1.3	122729
2pijA	67	58.84		
1xjuA	163	66.07	d.2.1.3	115394
3ge9A	255	67.25		
1r69	69	73.10		
2elhA	87	73.86		
2zjdA	130	76.38	d.15.1.3	154484
2hqhE	25	77.51		
1u6pA	56	78.22	g.40.1.1	113073
2hzmA	212	78.25		
2wmyA	150	81.08		
3k2kA	403	81.82		
1u58A	253	82.74	b.1.1.2,d.19.1.1	144387,144388
2uytA	489	83.52		
1jkoC	52	86.36	a.4.1.2	66809