# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3ivpA	126	2.586		
2ictA	94	3.538	a.35.1.3	147605
1lliA	92	3.663	a.35.1.2	17025
1y9qA	192	3.724	a.35.1.8,b.82.1.15	116592,116593
2bnmA	198	7.298	a.35.1.3,b.82.1.10	128835,128836
2z0dA	357	9.753	d.3.1.22	145769
1lmb3	92	10.10		
2cw1A	65	10.14	k.46.1.1	130918
2jvlA	107	10.26		
2ebyA	113	11.75		
1r69A	69	12.67	a.35.1.2	17028
1neqA	74	14.05	a.35.1.2	17063
3cecA	104	16.22		
1ic8A	194	16.54	a.4.1.1,a.35.1.1	76740,76741
1b0nA	111	17.73	a.34.1.1,a.35.1.3	17001,17064
1lyvA	306	18.98	c.45.1.2	74348
3b7hA	78	19.52		
2r7rA	1095	21.50		
2ef8A	84	22.48		
2r1jL	68	23.11	a.35.1.2	151525
3brvA	48	24.63		
2c5qA	240	25.11		
1rioA	98	25.90	a.35.1.2	97513
2cro	71	28.00		
2croA	71	28.30	a.35.1.2	17038
3kz3A	80	30.52		
1y7yA	74	33.62	a.35.1.3	122729
1adrA	76	36.03	a.35.1.2	17042
2p63A	56	37.32		
1utxA	66	40.75	a.35.1.3	108034
2ovgA	66	40.98		
1orcA	71	41.17	a.35.1.2	17054
1tuzA	118	44.75	a.39.1.7	112670
1nkgA	508	45.29	b.3.1.2,b.18.1.25,b.30.5.10	103859,103860,103861
1jkoC	52	48.35	a.4.1.2	66809
1orc	71	48.59		
1r69	69	52.71		
3f6wA	83	53.75		
1u6pA	56	56.24	g.40.1.1	113073
2hqhE	25	61.29		
1xjuA	163	64.24	d.2.1.3	115394
3ge9A	255	64.68		
2zjdA	130	65.45	d.15.1.3	154484
1u58A	253	65.67	b.1.1.2,d.19.1.1	144387,144388
3k8pC	357	66.35		
1pfoA	500	70.43	f.9.1.1	43826
2b5aA	77	72.87	a.35.1.3	127882
2pijA	67	74.52		
1edg	380	78.59		
1ki1B	352	81.63	a.87.1.1,b.55.1.1	72497,72498
3hdfA	140	87.11		
2cy7A	396	87.37	d.3.1.22	146431