# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3ivpA	126	3.846		
2ictA	94	4.638	a.35.1.3	147605
1y9qA	192	4.830	a.35.1.8,b.82.1.15	116592,116593
1lliA	92	5.943	a.35.1.2	17025
2bnmA	198	9.148	a.35.1.3,b.82.1.10	128835,128836
2jvlA	107	11.97		
1lmb3	92	12.81		
2ebyA	113	15.05		
1r69A	69	15.69	a.35.1.2	17028
1ic8A	194	16.18	a.4.1.1,a.35.1.1	76740,76741
1neqA	74	18.02	a.35.1.2	17063
3brvA	48	20.40		
3cecA	104	20.42		
2z0dA	357	20.90	d.3.1.22	145769
2r1jL	68	21.64	a.35.1.2	151525
3b7hA	78	21.70		
1b0nA	111	22.77	a.34.1.1,a.35.1.3	17001,17064
2r7rA	1095	24.61		
2ef8A	84	25.24		
2cw1A	65	25.34	k.46.1.1	130918
2cro	71	26.45		
1adrA	76	27.34	a.35.1.2	17042
1lyvA	306	27.35	c.45.1.2	74348
2croA	71	28.21	a.35.1.2	17038
2p63A	56	29.96		
3kz3A	80	32.72		
2ovgA	66	39.70		
1orcA	71	40.40	a.35.1.2	17054
1y7yA	74	40.53	a.35.1.3	122729
1orc	71	46.91		
1utxA	66	49.12	a.35.1.3	108034
1tuzA	118	50.37	a.39.1.7	112670
1r69	69	51.40		
1rioA	98	51.93	a.35.1.2	97513
2c5qA	240	54.30		
1u58A	253	55.97	b.1.1.2,d.19.1.1	144387,144388
2hzmA	212	63.21		
1m3iA	471	64.25	f.9.1.1	91178
1nkgA	508	68.99	b.3.1.2,b.18.1.25,b.30.5.10	103859,103860,103861
1wjuA	100	70.52	d.15.1.1	114712
3f6wA	83	71.03		
3ge9A	255	72.42		
1pfoA	500	73.43	f.9.1.1	43826
1u6pA	56	79.41	g.40.1.1	113073
2uytA	489	80.10		
1xjuA	163	80.32	d.2.1.3	115394
3d0fA	106	80.48		
2pijA	67	83.89		
2b5aA	77	88.07	a.35.1.3	127882
3bd1A	79	89.03		
3hxlA	446	89.89