# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2jvlA	107	2.839		
1y9qA	192	4.016	a.35.1.8,b.82.1.15	116592,116593
2ictA	94	6.756	a.35.1.3	147605
1lliA	92	7.454	a.35.1.2	17025
2elhA	87	14.25		
3ivpA	126	14.43		
1lmb3	92	17.39		
1azo	232	20.23		
3cecA	104	20.32		
2cw1A	65	20.57	k.46.1.1	130918
1neqA	74	22.85	a.35.1.2	17063
2bnmA	198	23.38	a.35.1.3,b.82.1.10	128835,128836
1edg	380	25.40		
3kz3A	80	25.42		
3hxlA	446	33.31		
1r69A	69	38.43	a.35.1.2	17028
2ebyA	113	44.46		
3brvA	48	45.20		
2kuoA	91	45.71		
2fv2A	268	47.81		
2r1jL	68	50.86	a.35.1.2	151525
1m3iA	471	53.97	f.9.1.1	91178
3b7hA	78	57.59		
1uilA	113	57.63	d.50.1.1	113255
3il0A	131	57.73		
3l09A	266	61.96		
1rioA	98	64.44	a.35.1.2	97513
2croA	71	65.03	a.35.1.2	17038
2cro	71	65.67		
3k9uA	159	65.91		
1y7yA	74	67.01	a.35.1.3	122729
2dskA	311	70.30		
1pfoA	500	73.06	f.9.1.1	43826
1azoA	232	75.43	c.52.1.14	33329
2fd6U	276	76.46	g.7.1.3,g.7.1.3,g.7.1.3	145159,145160,145161
1tuzA	118	77.13	a.39.1.7	112670
2uytA	489	78.32		
1mqeA	207	78.63	d.113.1.1	91394
3f6wA	83	79.47		
1adrA	76	79.57	a.35.1.2	17042
1okcA	297	83.56	f.42.1.1	93248
1jkoC	52	84.47	a.4.1.2	66809
1utxA	66	86.78	a.35.1.3	108034