# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3ivpA	126	2.205		
1y9qA	192	4.049	a.35.1.8,b.82.1.15	116592,116593
2z0dA	357	4.667	d.3.1.22	145769
2jvlA	107	7.681		
2ictA	94	14.42	a.35.1.3	147605
2bnmA	198	18.25	a.35.1.3,b.82.1.10	128835,128836
2cw1A	65	23.73	k.46.1.1	130918
2r1jL	68	30.30	a.35.1.2	151525
2cy7A	396	30.42	d.3.1.22	146431
1vc4A	254	30.66	c.1.2.4	100557
1lliA	92	35.54	a.35.1.2	17025
2cro	71	35.67		
2croA	71	38.65	a.35.1.2	17038
3cecA	104	39.16		
1r69A	69	39.40	a.35.1.2	17028
2hqhE	25	41.09		
2ebyA	113	42.64		
1tuzA	118	45.55	a.39.1.7	112670
3hxlA	446	49.30		
2pijA	67	49.32		
1adrA	76	51.20	a.35.1.2	17042
1lmb3	92	51.67		
2ovgA	66	55.87		
1m3iA	471	57.98	f.9.1.1	91178
1neqA	74	58.14	a.35.1.2	17063
1b0nA	111	61.03	a.34.1.1,a.35.1.3	17001,17064
1u6pA	56	63.45	g.40.1.1	113073
3f6wA	83	63.86		
1orcA	71	65.02	a.35.1.2	17054
1y7yA	74	65.40	a.35.1.3	122729
1q5fA	156	65.88	d.24.1.1	104536
1xjuA	163	68.80	d.2.1.3	115394
1pfoA	500	69.01	f.9.1.1	43826
1orc	71	71.18		
3eusA	86	73.72		
3l09A	266	74.67		
1azo	232	79.37		
1ic8A	194	84.05	a.4.1.1,a.35.1.1	76740,76741
2uytA	489	84.63		
2ef8A	84	86.52