# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3eusA 86 0.6606 2jvlA 107 0.6879 3ivpA 126 0.9868 2ahqA 76 2.552 1y9qA 192 2.615 a.35.1.8,b.82.1.15 116592,116593 2r1jL 68 3.083 a.35.1.2 151525 3fyaA 99 3.171 2ictA 94 3.850 a.35.1.3 147605 2bnmA 198 3.956 a.35.1.3,b.82.1.10 128835,128836 3cecA 104 4.777 3g5gA 99 5.023 1r69A 69 5.230 a.35.1.2 17028 3b7hA 78 5.244 1l3eB 101 5.399 g.53.1.1 73536 1adrA 76 5.549 a.35.1.2 17042 2b5aA 77 6.182 a.35.1.3 127882 1b0nA 111 6.824 a.34.1.1,a.35.1.3 17001,17064 1sv0C 82 7.382 a.60.1.1 106037 1y7yA 74 7.615 a.35.1.3 122729 1neqA 74 7.823 a.35.1.2 17063 2nq2C 253 8.875 3f52A 117 9.142 1orc 71 9.323 1r69 69 9.323 1lliA 92 9.446 a.35.1.2 17025 1orcA 71 9.452 a.35.1.2 17054 2vwaA 101 9.591 1b79A 119 9.667 a.81.1.1 18451 2e8oA 103 10.47 2pjpA 121 10.52 2croA 71 10.58 a.35.1.2 17038 2dg6A 222 11.68 2cro 71 11.95 3f6wA 83 12.18 1pk1B 89 12.72 a.60.1.2 118712 2o6lA 170 13.43 1q1vA 70 13.85 a.159.4.1 104479 2idoB 83 15.10 a.237.1.1 137285 3bs5A 106 15.24 3bs7A 78 15.58 2ef8A 84 15.95 2prrA 197 19.70 a.152.1.3 149803 1utxA 66 21.98 a.35.1.3 108034 1k61A 60 22.48 a.4.1.1 77270 1jkoC 52 22.70 a.4.1.2 66809 1tz7A 505 24.80 c.1.8.1 119394 1ji7A 89 25.67 a.60.1.1 71682 2e29A 92 26.57 d.58.7.5 146643 3kz3A 80 27.13 3hsiA 458 28.21 1pufB 73 30.92 a.4.1.1 95132 3lo8A 311 31.17 2zdbA 195 32.27 1ic8A 194 32.35 a.4.1.1,a.35.1.1 76740,76741 2qugA 394 32.83 2qsaA 109 34.45 3gxvA 123 34.46 2o38A 120 36.62 a.35.1.13 148568 3i3fA 141 41.32 2z2mA 168 41.36 1kpf 126 43.92 1kpeA 126 44.68 d.13.1.1 37508 2qt1A 207 44.91 1rioA 98 45.70 a.35.1.2 97513 2czvC 120 46.55 d.58.59.1 145059 3fqgA 360 46.84 2g2qA 124 47.85 1kw4A 89 48.99 a.60.1.2 73077 2ovgA 66 50.19 2ppxA 99 51.56 a.35.1.3 149783 3g5pA 183 51.72 1kuxA 207 53.01 d.108.1.1 73021 2ebyA 113 54.14 1v74B 87 54.69 a.24.20.1 100443 2pijA 67 55.09 3bs3A 76 57.21 1gytA 503 57.62 c.50.1.1,c.56.5.3 70765,70766 2i7aA 174 57.90 3ia7A 402 58.66 1rz4A 226 59.28 a.4.5.53,a.118.1.18 105131,105132 1sw5B 275 59.35 c.94.1.1 106070 1dwkA 156 60.50 a.35.1.4,d.72.1.1 17075,39606 1yioA 208 62.40 a.4.6.2,c.23.1.1 123326,123327 1vbjA 281 63.86 1k8wA 327 65.54 b.122.1.1,d.265.1.2 83094,90388 1kr7A 110 69.31 a.1.1.4 72890 3f7jA 276 70.17 1je8A 82 71.07 a.4.6.2 77108 2cw1A 65 74.04 k.46.1.1 130918 1a0aA 63 75.63 a.38.1.1 17138 3mv2A 325 76.73 2g9wA 138 78.16 a.4.5.39 147097 3gvvA 367 78.22 2a6cA 83 78.88 a.35.1.13 126236 1r71A 178 79.95 a.4.14.1 104823 1qtqA 553 80.81 b.53.1.2,c.26.1.1 26940,31579 2d5vA 164 83.96 1nh1A 330 84.78 e.45.1.1 91871 2oyoA 196 85.34 a.152.1.3 149068 1kpfA 125 85.67 d.13.1.1 37507 3cptA 143 86.32 d.110.7.1 156903 2iyaA 424 88.01 2o66A 135 88.93