# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ictA	94	3.723	a.35.1.3	147605
3b7hA	78	3.928		
1r69	69	4.437		
3cecA	104	6.130		
2bnmA	198	7.550	a.35.1.3,b.82.1.10	128835,128836
1rioA	98	8.426	a.35.1.2	97513
2cro	71	8.570		
1b0nA	111	12.30	a.34.1.1,a.35.1.3	17001,17064
1ic8A	194	12.93	a.4.1.1,a.35.1.1	76740,76741
2croA	71	15.25	a.35.1.2	17038
2cw1A	65	15.34	k.46.1.1	130918
1y9qA	192	15.39	a.35.1.8,b.82.1.15	116592,116593
1lliA	92	15.70	a.35.1.2	17025
3eusA	86	15.80		
2r1jL	68	16.48	a.35.1.2	151525
1orc	71	16.86		
2ebyA	113	17.86		
1adrA	76	23.61	a.35.1.2	17042
1y7yA	74	24.16	a.35.1.3	122729
3brvA	48	30.38		
1utxA	66	31.97	a.35.1.3	108034
1r69A	69	32.94	a.35.1.2	17028
2jvlA	107	33.99		
2p63A	56	34.02		
5croA	66	35.14	a.35.1.2	17044
3kfwX	247	35.39		
1orcA	71	36.18	a.35.1.2	17054
2ovgA	66	36.30		
3ivpA	126	42.10		
2g64A	140	43.56	d.96.1.2	134694
2b5aA	77	43.73	a.35.1.3	127882
1lmb3	92	44.94		
2pijA	67	51.57		
3kz3A	80	53.71		
1uzcA	71	56.08	a.159.2.1	100222
1neqA	74	59.60	a.35.1.2	17063
1zuoA	186	62.14	d.20.1.1	125680
3f6wA	83	71.37		
1xjuA	163	72.52	d.2.1.3	115394
3bwvA	180	77.04		
3eqeA	171	84.99		
3m99A	471	88.78		
3bd1A	79	89.01