# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1rioA	98	1.582	a.35.1.2	97513
2ictA	94	1.757	a.35.1.3	147605
3b7hA	78	1.840		
1r69	69	2.538		
2bnmA	198	3.498	a.35.1.3,b.82.1.10	128835,128836
1lliA	92	4.012	a.35.1.2	17025
3cecA	104	4.034		
1ic8A	194	4.278	a.4.1.1,a.35.1.1	76740,76741
2cro	71	6.097		
2jvlA	107	6.125		
3eusA	86	6.504		
2r1jL	68	7.385	a.35.1.2	151525
1b0nA	111	8.393	a.34.1.1,a.35.1.3	17001,17064
1neqA	74	8.842	a.35.1.2	17063
2ebyA	113	9.152		
1y9qA	192	9.269	a.35.1.8,b.82.1.15	116592,116593
2cw1A	65	9.634	k.46.1.1	130918
2p63A	56	10.36		
1y7yA	74	11.60	a.35.1.3	122729
1adrA	76	12.42	a.35.1.2	17042
3kz3A	80	13.41		
1utxA	66	15.00	a.35.1.3	108034
2croA	71	15.21	a.35.1.2	17038
1orc	71	17.40		
2g64A	140	18.39	d.96.1.2	134694
1lmb3	92	19.79		
2b5aA	77	20.39	a.35.1.3	127882
3brvA	48	24.99		
3ivpA	126	28.30		
1r69A	69	30.47	a.35.1.2	17028
1mtzA	293	33.76	c.69.1.7	79467
5croA	66	33.79	a.35.1.2	17044
2kd1A	118	34.97		
1xjuA	163	38.27	d.2.1.3	115394
2wvlA	391	40.15		
1orcA	71	40.93	a.35.1.2	17054
2ovgA	66	41.03		
3f6wA	83	43.64		
1wjuA	100	48.57	d.15.1.1	114712
3kfwX	247	50.14		
1uzcA	71	50.43	a.159.2.1	100222
3bd1A	79	50.59		
3eqeA	171	51.28		
1pfoA	500	54.52	f.9.1.1	43826
3bwvA	180	56.35		
3d0fA	106	59.03		
2ek0A	90	60.22		
1vyxA	60	61.23	g.44.1.3	114033
3hdfA	140	62.71		
2elhA	87	68.68		
1zuoA	186	68.72	d.20.1.1	125680
3co1A	132	70.26		
3fyaA	99	70.84		
2pijA	67	72.53		
3g5gA	99	72.55		
3bs5A	106	74.95		
2hzmA	212	76.45		
2w7nA	101	78.09		
2a1jA	63	78.72	a.60.2.5	126000
1jkoC	52	78.92	a.4.1.2	66809
3cqfA	489	80.85		
3bp8A	406	83.68	a.4.5.63,c.55.1.10,c.55.1.10	155463,155464,155465
1w79A	489	84.12	e.3.1.3	120680