# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ictA	94	8.299	a.35.1.3	147605
1r69	69	8.402		
3b7hA	78	9.461		
3cecA	104	11.63		
1rioA	98	12.52	a.35.1.2	97513
2cro	71	16.74		
2bnmA	198	22.02	a.35.1.3,b.82.1.10	128835,128836
2jvlA	107	23.03		
1b0nA	111	25.24	a.34.1.1,a.35.1.3	17001,17064
1lliA	92	29.54	a.35.1.2	17025
3eusA	86	30.56		
1y9qA	192	31.48	a.35.1.8,b.82.1.15	116592,116593
2croA	71	33.59	a.35.1.2	17038
3brvA	48	34.01		
2r1jL	68	38.27	a.35.1.2	151525
1orc	71	39.17		
2cw1A	65	39.56	k.46.1.1	130918
1utxA	66	43.33	a.35.1.3	108034
2ebyA	113	44.97		
1ic8A	194	46.79	a.4.1.1,a.35.1.1	76740,76741
5croA	66	51.11	a.35.1.2	17044
1zuoA	186	53.91	d.20.1.1	125680
1uzcA	71	55.15	a.159.2.1	100222
1adrA	76	55.66	a.35.1.2	17042
2ovgA	66	60.25		
1y7yA	74	63.80	a.35.1.3	122729
2g64A	140	66.70	d.96.1.2	134694
2p63A	56	67.63		
2ixdA	242	72.06		
1orcA	71	72.07	a.35.1.2	17054
3bwvA	180	72.23		
1u2eA	289	73.32		
3l5xA	113	74.68		
1r69A	69	74.82	a.35.1.2	17028
3kfwX	247	80.39		
3bd1A	79	83.00		
2pijA	67	86.15		
2ggtA	164	86.29	c.47.1.10	135156
3kz3A	80	87.10