# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1r69	69	8.577		
2ictA	94	9.568	a.35.1.3	147605
3b7hA	78	9.943		
3cecA	104	12.31		
1rioA	98	14.87	a.35.1.2	97513
2cro	71	18.47		
2bnmA	198	21.33	a.35.1.3,b.82.1.10	128835,128836
2jvlA	107	28.58		
1b0nA	111	29.36	a.34.1.1,a.35.1.3	17001,17064
1orc	71	32.56		
1y9qA	192	34.21	a.35.1.8,b.82.1.15	116592,116593
3eusA	86	35.39		
2croA	71	36.78	a.35.1.2	17038
2r1jL	68	38.19	a.35.1.2	151525
1utxA	66	39.17	a.35.1.3	108034
1lliA	92	39.32	a.35.1.2	17025
2cw1A	65	39.45	k.46.1.1	130918
3brvA	48	42.17		
5croA	66	44.00	a.35.1.2	17044
2ebyA	113	48.71		
2ovgA	66	50.96		
1uzcA	71	57.80	a.159.2.1	100222
1adrA	76	58.10	a.35.1.2	17042
1orcA	71	61.46	a.35.1.2	17054
2p63A	56	63.27		
2g64A	140	64.77	d.96.1.2	134694
1y7yA	74	70.53	a.35.1.3	122729
1r69A	69	71.36	a.35.1.2	17028
2pijA	67	75.31		
2ixdA	242	75.31		
1zuoA	186	76.94	d.20.1.1	125680
3bd1A	79	79.80		
1ic8A	194	79.99	a.4.1.1,a.35.1.1	76740,76741
3bwvA	180	81.75		
3kfwX	247	82.32		
1u6pA	56	86.45	g.40.1.1	113073
1a6bB	40	87.63	g.40.1.1	45172
2hqhE	25	87.77