# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1r69	69	11.97		
2ictA	94	12.58	a.35.1.3	147605
3b7hA	78	15.23		
3cecA	104	16.25		
1rioA	98	19.32	a.35.1.2	97513
2cro	71	27.86		
2jvlA	107	29.45		
2bnmA	198	34.70	a.35.1.3,b.82.1.10	128835,128836
3eusA	86	38.51		
1b0nA	111	41.35	a.34.1.1,a.35.1.3	17001,17064
1lliA	92	44.48	a.35.1.2	17025
3brvA	48	47.99		
2r1jL	68	49.45	a.35.1.2	151525
1y9qA	192	51.65	a.35.1.8,b.82.1.15	116592,116593
2croA	71	55.41	a.35.1.2	17038
1orc	71	57.29		
1utxA	66	58.44	a.35.1.3	108034
2cw1A	65	59.12	k.46.1.1	130918
1uzcA	71	64.33	a.159.2.1	100222
2ixdA	242	64.43		
2g64A	140	71.44	d.96.1.2	134694
1zuoA	186	75.13	d.20.1.1	125680
5croA	66	75.28	a.35.1.2	17044
1adrA	76	75.34	a.35.1.2	17042
1y7yA	74	78.12	a.35.1.3	122729
2ebyA	113	78.93		
2ovgA	66	82.36		
1ic8A	194	86.34	a.4.1.1,a.35.1.1	76740,76741
3kfwX	247	88.90