# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ictA	94	4.266	a.35.1.3	147605
3b7hA	78	4.560		
2jvlA	107	7.296		
2bnmA	198	7.898	a.35.1.3,b.82.1.10	128835,128836
3cecA	104	9.289		
1y9qA	192	9.881	a.35.1.8,b.82.1.15	116592,116593
3eusA	86	10.66		
1orc	71	10.67		
2r1jL	68	11.21	a.35.1.2	151525
1y7yA	74	11.88	a.35.1.3	122729
5croA	66	12.59	a.35.1.2	17044
1neqA	74	13.04	a.35.1.2	17063
2cro	71	13.04		
1r69	69	13.06		
1rioA	98	13.07	a.35.1.2	97513
1b0nA	111	15.56	a.34.1.1,a.35.1.3	17001,17064
2croA	71	17.05	a.35.1.2	17038
1orcA	71	20.53	a.35.1.2	17054
1lliA	92	20.67	a.35.1.2	17025
2cw1A	65	22.24	k.46.1.1	130918
2ebyA	113	22.59		
1utxA	66	22.65	a.35.1.3	108034
2ovgA	66	24.02		
3ivpA	126	25.96		
2b5aA	77	27.86	a.35.1.3	127882
1adrA	76	33.50	a.35.1.2	17042
3bd1A	79	35.99		
1r69A	69	39.57	a.35.1.2	17028
1ic8A	194	44.50	a.4.1.1,a.35.1.1	76740,76741
3f6wA	83	44.75		
2pijA	67	45.15		
3fyaA	99	48.37		
2qjfA	405	50.61		
3g5gA	99	56.22		
3bs3A	76	58.27		
3kz3A	80	67.56		
3f52A	117	68.79		
3il0A	131	78.38		
2qguA	211	80.88		
3mmiA	386	84.88		
1lmb3	92	84.98		
2elhA	87	87.25