# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3b7hA	78	6.446		
2ictA	94	7.611	a.35.1.3	147605
1rioA	98	8.554	a.35.1.2	97513
1r69	69	10.83		
2bnmA	198	13.62	a.35.1.3,b.82.1.10	128835,128836
3cecA	104	21.07		
3eusA	86	22.42		
2cro	71	24.42		
1y9qA	192	27.11	a.35.1.8,b.82.1.15	116592,116593
3brvA	48	27.48		
1b0nA	111	34.50	a.34.1.1,a.35.1.3	17001,17064
1y7yA	74	38.08	a.35.1.3	122729
2cw1A	65	39.21	k.46.1.1	130918
1lliA	92	39.86	a.35.1.2	17025
1ic8A	194	45.86	a.4.1.1,a.35.1.1	76740,76741
2g64A	140	50.03	d.96.1.2	134694
2croA	71	50.06	a.35.1.2	17038
2r1jL	68	50.26	a.35.1.2	151525
1orc	71	50.42		
1u20A	212	55.80	d.113.1.1	119463
1uzcA	71	59.76	a.159.2.1	100222
2jvlA	107	61.09		
1adrA	76	62.81	a.35.1.2	17042
3kfwX	247	67.16		
2ebyA	113	73.31		
2p63A	56	84.55		
2hqhE	25	85.50		
1mtzA	293	86.13	c.69.1.7	79467
1utxA	66	89.69	a.35.1.3	108034
1nn5A	215	89.82	c.37.1.1	85892