# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1b0nA	111	1.757	a.34.1.1,a.35.1.3	17001,17064
1exrA	148	2.750	a.39.1.5	17299
2ieaA	886	3.420	c.36.1.6,c.36.1.10,c.48.1.1	137294,137295,137296
3mi6A	745	4.116		
1vybA	238	4.577	d.151.1.1	108897
2ictA	94	4.782	a.35.1.3	147605
3b7hA	78	4.939		
1rioA	98	6.532	a.35.1.2	97513
1r69	69	7.795		
2bnmA	198	9.806	a.35.1.3,b.82.1.10	128835,128836
3cecA	104	10.38		
3hucA	360	12.23		
2dulA	378	12.45	c.66.1.58	146588
1g79A	218	12.57	b.45.1.1	25752
3hx4A	508	12.60		
1uzcA	71	12.94	a.159.2.1	100222
2o5vA	359	14.24		
3eusA	86	15.03		
3fz0A	360	15.88		
2cro	71	19.83		
1lliA	92	21.44	a.35.1.2	17025
1w79A	489	22.09	e.3.1.3	120680
3gyrA	612	23.53		
1afwA	393	25.83	c.95.1.1,c.95.1.1	35900,35901
1yjsA	419	25.92	c.67.1.4	123461
3bdqA	110	27.61		
2cw1A	65	27.79	k.46.1.1	130918
2agtA	319	27.80		
2jvlA	107	28.84		
2fiqA	420	30.55	c.1.10.7	133527
1ic8A	194	30.66	a.4.1.1,a.35.1.1	76740,76741
1us0A	316	32.38	c.1.7.1	99850
1y7yA	74	32.70	a.35.1.3	122729
2r1jL	68	33.00	a.35.1.2	151525
3brvA	48	33.38		
1v33A	366	33.65	d.264.1.1	100278
1tca	317	36.03		
1ia6A	441	36.07	a.102.1.2	76738
1thtA	305	38.37	c.69.1.13	34711
2e6mA	208	40.15		
2pieA	138	41.95	b.26.1.2	149508
1wkyA	464	42.57	b.18.1.31,c.1.8.3	120992,120993
1p9aG	290	46.38	c.10.2.7	87990
1j99A	293	48.37	c.37.1.5	71618
3c5pA	197	48.43		
1rl0A	255	49.55	d.165.1.1	111859
2eyuA	261	51.52		
1adrA	76	51.83	a.35.1.2	17042
2croA	71	52.53	a.35.1.2	17038
3l4jA	757	53.90		
2ebyA	113	55.72		
2awiA	317	56.20	a.35.1.11,a.118.8.4	127435,127436
2wjaA	168	56.91		
2wmyA	150	57.15		
1orc	71	57.46		
1amk	251	58.73		
1yozA	116	58.96	a.253.1.1	123796
2a4hA	126	59.72	c.47.1.23	126155
3ivpA	126	59.91		
3e05A	204	61.11		
1nn5A	215	61.60	c.37.1.1	85892
1zuoA	186	62.04	d.20.1.1	125680
1j7xA	302	62.73	c.14.1.2	66425
1ypvA	313	63.44		
2b5aA	77	64.94	a.35.1.3	127882
2zfoC	147	65.30		
1dxrC	336	65.43	a.138.1.2	19670
3biaX	116	68.12		
1gadO	330	68.20	c.2.1.3,d.81.1.1	29950,39865
2qlzA	232	68.78		
3h9vA	356	70.04		
2a9dA	372	72.41	b.1.18.6,d.176.1.1	126431,126432
3f6wA	83	72.68		
1qwkA	317	72.97	c.1.7.1	96482
1lmb3	92	73.33		
2qztA	111	75.01		
2ayvA	166	75.99	d.20.1.1	127572
3l09A	266	77.36		
1y7wA	291	77.80		
1z5rA	306	77.81	c.56.5.1	124488
3eayA	323	78.22		
1utxA	66	80.02	a.35.1.3	108034
2pnwA	380	80.76	b.52.1.4	149707
3gkqA	389	81.32		
2olvA	669	81.59	d.2.1.10,e.3.1.1	148821,148822
1eejA	216	83.12	c.47.1.9,d.17.3.1	33057,38071
3d0fA	106	83.38		
3gc9A	370	84.48		
1w5nA	337	86.48		
2dnjA	260	87.25	d.151.1.1	41790
2vhfA	374	87.55		
2w07A	218	89.05		
1iejA	332	89.54	c.94.1.2	62328