# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ictA	94	4.178	a.35.1.3	147605
1rioA	98	4.407	a.35.1.2	97513
3b7hA	78	4.961		
1r69	69	6.950		
2bnmA	198	9.066	a.35.1.3,b.82.1.10	128835,128836
3cecA	104	11.66		
1y9qA	192	13.76	a.35.1.8,b.82.1.15	116592,116593
3eusA	86	16.60		
2cro	71	17.19		
1lliA	92	20.06	a.35.1.2	17025
1b0nA	111	22.26	a.34.1.1,a.35.1.3	17001,17064
2cw1A	65	23.83	k.46.1.1	130918
2r1jL	68	24.79	a.35.1.2	151525
2jvlA	107	26.34		
1y7yA	74	27.81	a.35.1.3	122729
3brvA	48	28.80		
1orc	71	28.93		
1ic8A	194	33.06	a.4.1.1,a.35.1.1	76740,76741
2croA	71	36.32	a.35.1.2	17038
2ebyA	113	37.75		
1adrA	76	39.93	a.35.1.2	17042
3hdfA	140	40.44		
1lmb3	92	45.88		
3kfwX	247	50.30		
1utxA	66	50.74	a.35.1.3	108034
1uzcA	71	52.77	a.159.2.1	100222
2b5aA	77	53.02	a.35.1.3	127882
2g64A	140	55.65	d.96.1.2	134694
1xjuA	163	56.33	d.2.1.3	115394
5croA	66	60.99	a.35.1.2	17044
1zuoA	186	61.34	d.20.1.1	125680
2ovgA	66	61.70		
1iejA	332	62.04	c.94.1.2	62328
1mtzA	293	63.68	c.69.1.7	79467
1orcA	71	64.18	a.35.1.2	17054
1r69A	69	71.60	a.35.1.2	17028
3ivpA	126	73.26		
2anxA	146	76.18		
1u20A	212	76.71	d.113.1.1	119463
2p63A	56	77.69		
1nn5A	215	80.74	c.37.1.1	85892
3f6wA	83	82.99		
3kz3A	80	87.39		
3bp8A	406	88.87	a.4.5.63,c.55.1.10,c.55.1.10	155463,155464,155465