# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ictA	94	4.966	a.35.1.3	147605
1rioA	98	5.518	a.35.1.2	97513
3b7hA	78	5.959		
1r69	69	8.857		
3cecA	104	9.213		
2bnmA	198	10.81	a.35.1.3,b.82.1.10	128835,128836
2cw1A	65	11.13	k.46.1.1	130918
1ic8A	194	16.72	a.4.1.1,a.35.1.1	76740,76741
1y9qA	192	16.77	a.35.1.8,b.82.1.15	116592,116593
1lliA	92	17.53	a.35.1.2	17025
3eusA	86	19.86		
1orc	71	21.34		
2cro	71	22.21		
2jvlA	107	22.54		
2r1jL	68	23.31	a.35.1.2	151525
1b0nA	111	23.92	a.34.1.1,a.35.1.3	17001,17064
2ebyA	113	25.72		
3brvA	48	30.83		
2croA	71	35.76	a.35.1.2	17038
1y7yA	74	36.11	a.35.1.3	122729
1neqA	74	36.59	a.35.1.2	17063
1utxA	66	37.34	a.35.1.3	108034
2g64A	140	37.84	d.96.1.2	134694
3kfwX	247	38.00		
1zuoA	186	38.46	d.20.1.1	125680
2p63A	56	40.02		
5croA	66	44.05	a.35.1.2	17044
3bwvA	180	44.71		
1adrA	76	46.39	a.35.1.2	17042
3eqeA	171	48.19		
2ovgA	66	48.39		
1orcA	71	48.88	a.35.1.2	17054
1xjuA	163	59.36	d.2.1.3	115394
2hqhE	25	60.73		
1u6pA	56	65.43	g.40.1.1	113073
1a6bB	40	68.96	g.40.1.1	45172
2b5aA	77	69.94	a.35.1.3	127882
3kz3A	80	70.48		
3ivpA	126	72.12		
3hdfA	140	73.31		
1uzcA	71	75.33	a.159.2.1	100222
1lmb3	92	77.39		
2pijA	67	79.69		
1r69A	69	81.38	a.35.1.2	17028
2gnrA	145	81.73	b.40.4.15	147140