# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2jvlA	107	2.960		
2ictA	94	7.920	a.35.1.3	147605
3cecA	104	10.31		
1r69	69	13.19		
1rioA	98	13.97	a.35.1.2	97513
3b7hA	78	18.40		
2elhA	87	18.59		
3eusA	86	20.10		
2cro	71	20.22		
1lliA	92	22.17	a.35.1.2	17025
1uzcA	71	24.50	a.159.2.1	100222
1y9qA	192	28.39	a.35.1.8,b.82.1.15	116592,116593
2cw1A	65	33.67	k.46.1.1	130918
1y7yA	74	35.64	a.35.1.3	122729
3bqkA	360	41.64		
3kz3A	80	43.33		
2bnmA	198	45.13	a.35.1.3,b.82.1.10	128835,128836
2r1jL	68	48.62	a.35.1.2	151525
2fv2A	268	48.83		
2croA	71	49.34	a.35.1.2	17038
1orc	71	55.41		
3cb2A	475	57.92		
1neqA	74	61.78	a.35.1.2	17063
1lmb3	92	62.06		
3lzkA	359	63.08		
1ir6A	424	63.23	c.107.1.2	71342
1utxA	66	67.42	a.35.1.3	108034
3jthA	98	70.02		
1azoA	232	70.18	c.52.1.14	33329
3brvA	48	72.99		
1nnhA	294	74.81	d.104.1.1	92005
3mmiA	386	75.02		
2d9bA	109	78.78		
5croA	66	79.12	a.35.1.2	17044
3il0A	131	82.00		
2ebyA	113	82.85		
3fxhA	135	83.60		
3ixmA	240	84.84		
1q3yA	42	86.59	g.40.1.1	104530
2aorA	223	87.97