# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2jvlA	107	10.71		
3b7hA	78	11.62		
2cw1A	65	11.94	k.46.1.1	130918
2ictA	94	13.84	a.35.1.3	147605
2bnmA	198	17.42	a.35.1.3,b.82.1.10	128835,128836
3cecA	104	18.52		
2cro	71	21.66		
1r69	69	22.72		
3eusA	86	23.29		
1y9qA	192	24.00	a.35.1.8,b.82.1.15	116592,116593
1orc	71	30.90		
2croA	71	31.15	a.35.1.2	17038
1rioA	98	33.07	a.35.1.2	97513
5croA	66	34.39	a.35.1.2	17044
2r1jL	68	35.46	a.35.1.2	151525
1y7yA	74	39.06	a.35.1.3	122729
1b0nA	111	39.20	a.34.1.1,a.35.1.3	17001,17064
1xjuA	163	45.64	d.2.1.3	115394
1adrA	76	50.28	a.35.1.2	17042
1q5fA	156	51.53	d.24.1.1	104536
2ovgA	66	51.79		
2hqhE	25	52.56		
2pijA	67	54.95		
1orcA	71	57.77	a.35.1.2	17054
3eqeA	171	61.15		
1neqA	74	62.98	a.35.1.2	17063
1u2wA	122	63.44	a.4.5.5	119487
2qjfA	405	66.59		
1u6pA	56	74.23	g.40.1.1	113073
2kcdA	120	74.46		
1utxA	66	76.51	a.35.1.3	108034
3fhvA	156	78.32		
2ebyA	113	78.46		
1a6bB	40	85.86	g.40.1.1	45172
1jhdA	396	86.00	b.122.1.3,c.26.1.5	66712,66713