PFRMAT RR TARGET T0643 AUTHOR SAM-T08-2stage REMARK From group SAM-TO6 under the direction of REMARK Kevin Karplus. REMARK Residue-residue contact predictions REMARK by George Shackelford and Kevin Karplus REMARK The value given is an approximation of the probability REMARK as provided by the neural network. REMARK The predictions are limited to a score >= .18 which REMARK is an approximation of the probability. REMARK METHOD The predictor is an artificial neural network. METHOD NN: con.aa5str2_5near5nsep5.entmi_epplccrr.th62.17.730_47.net METHOD Inputs may include separation and sequence length, METHOD e-value statistic based on mutual information values, METHOD a statistic based on propensity of residues in contact. METHOD Other inputs are distributions from alignments and METHOD secondary predictions from SAM-t04 and/or SAM-t06 of METHOD the University of California, Santa Cruz MODEL 1 MGHHHHHHSHMLPPEQWSHTTVRNALKDLLKDMNQSSLAKECPLSQSMIS SIVNSTYYANVSAAKCQEFGRWYKHFKKTKDMM 36 46 0 8 0.0230713 36 48 0 8 0.0222207 36 59 0 8 0.0369874 36 61 0 8 0.0444461 36 72 0 8 0.0404598 36 76 0 8 0.0308591 37 46 0 8 0.0193235 38 47 0 8 0.0714634 38 48 0 8 0.113995 38 49 0 8 0.179334 38 50 0 8 0.0547331 38 51 0 8 0.0475838 38 52 0 8 0.172436 38 53 0 8 0.12332 38 54 0 8 0.0438288 38 57 0 8 0.0965693 38 58 0 8 0.0810143 38 59 0 8 0.105352 38 61 0 8 0.136684 38 63 0 8 0.0804008 38 65 0 8 0.0790093 38 66 0 8 0.153827 38 68 0 8 0.0591442 38 69 0 8 0.159228 38 72 0 8 0.123356 38 73 0 8 0.106514 38 76 0 8 0.10215 38 79 0 8 0.0413629 39 48 0 8 0.101817 39 49 0 8 0.0955435 39 50 0 8 0.0376452 39 51 0 8 0.0496608 39 52 0 8 0.0677826 39 53 0 8 0.058187 39 54 0 8 0.0346185 39 55 0 8 0.0428071 39 56 0 8 0.0538684 39 57 0 8 0.0989481 39 58 0 8 0.0913117 39 59 0 8 0.123049 39 60 0 8 0.0670749 39 61 0 8 0.119464 39 62 0 8 0.0738321 39 63 0 8 0.0653471 39 65 0 8 0.0685678 39 66 0 8 0.121024 39 68 0 8 0.0483017 39 69 0 8 0.116932 39 70 0 8 0.0772398 39 72 0 8 0.0906633 39 73 0 8 0.119282 39 75 0 8 0.0405169 39 76 0 8 0.108888 39 79 0 8 0.0503468 40 49 0 8 0.023298 40 52 0 8 0.0186424 40 53 0 8 0.0191456 40 54 0 8 0.0190531 40 55 0 8 0.023716 40 57 0 8 0.0371812 40 59 0 8 0.0594183 40 61 0 8 0.061433 40 63 0 8 0.0356533 40 72 0 8 0.0478076 40 76 0 8 0.0484584 41 59 0 8 0.0845159 41 61 0 8 0.100668 41 72 0 8 0.0483003 42 51 0 8 0.0352558 42 52 0 8 0.0903236 42 53 0 8 0.0681974 42 54 0 8 0.0308215 42 57 0 8 0.101155 42 58 0 8 0.0927597 42 59 0 8 0.129529 42 60 0 8 0.0749006 42 61 0 8 0.176079 42 63 0 8 0.0790375 42 65 0 8 0.0656452 42 66 0 8 0.189927 42 68 0 8 0.0388697 42 69 0 8 0.113786 42 72 0 8 0.0959965 42 73 0 8 0.120748 42 76 0 8 0.100844 42 79 0 8 0.049051 43 61 0 8 0.0664481 44 53 0 8 0.071282 44 54 0 8 0.0326543 44 55 0 8 0.033063 44 56 0 8 0.0477508 44 57 0 8 0.0662493 44 58 0 8 0.0602375 44 59 0 8 0.084478 44 60 0 8 0.0618224 44 61 0 8 0.102073 44 62 0 8 0.0511651 44 63 0 8 0.0720059 44 65 0 8 0.061624 44 66 0 8 0.142569 44 68 0 8 0.0503694 44 69 0 8 0.129667 44 72 0 8 0.110864 44 73 0 8 0.0903001 44 75 0 8 0.0223412 44 76 0 8 0.0691032 44 79 0 8 0.0297805 45 57 0 8 0.0486738 45 58 0 8 0.0512694 45 59 0 8 0.0683658 45 60 0 8 0.0652182 45 61 0 8 0.0789999 45 62 0 8 0.0559935 45 63 0 8 0.0438357 45 65 0 8 0.0424573 46 55 0 8 0.0380188 46 56 0 8 0.0526732 46 57 0 8 0.0633624 46 58 0 8 0.0683133 46 59 0 8 0.0974012 46 60 0 8 0.075309 46 61 0 8 0.0972725 46 62 0 8 0.0665936 46 63 0 8 0.091981 46 65 0 8 0.0934202 46 66 0 8 0.176511 46 68 0 8 0.0555254 46 69 0 8 0.0976891 46 72 0 8 0.0986644 46 73 0 8 0.0851023 46 75 0 8 0.0225583 46 76 0 8 0.0635505 46 79 0 8 0.0283718 47 56 0 8 0.0298246 47 57 0 8 0.0333661 47 58 0 8 0.0383353 47 59 0 8 0.0523531 47 60 0 8 0.0572333 47 61 0 8 0.0660489 47 62 0 8 0.0426764 47 63 0 8 0.052739 47 65 0 8 0.0533722 47 66 0 8 0.151554 47 68 0 8 0.0351107 47 69 0 8 0.0815259 47 72 0 8 0.0869845 47 73 0 8 0.0781808 47 76 0 8 0.0524741 48 57 0 8 0.152899 48 58 0 8 0.161588 48 59 0 8 0.272141 48 60 0 8 0.101575 48 61 0 8 0.259692 48 62 0 8 0.0952709 48 63 0 8 0.0617865 48 65 0 8 0.0557064 48 66 0 8 0.1396 48 68 0 8 0.0385915 48 69 0 8 0.119987 48 72 0 8 0.101158 48 73 0 8 0.215744 48 76 0 8 0.180912 49 58 0 8 0.289492 49 59 0 8 0.411293 49 60 0 8 0.214894 49 61 0 8 0.460024 49 62 0 8 0.189636 49 63 0 8 0.139258 49 65 0 8 0.114105 49 66 0 8 0.228418 49 68 0 8 0.0800249 49 69 0 8 0.211744 49 72 0 8 0.176909 49 73 0 8 0.309951 49 76 0 8 0.267794 49 79 0 8 0.110005 50 59 0 8 0.302732 50 60 0 8 0.24517 50 61 0 8 0.297722 50 62 0 8 0.171865 50 63 0 8 0.133906 50 65 0 8 0.134499 50 66 0 8 0.200067 50 68 0 8 0.147379 50 69 0 8 0.256173 50 72 0 8 0.273476 50 73 0 8 0.158056 50 76 0 8 0.135845 50 79 0 8 0.0838622 51 60 0 8 0.20168 51 61 0 8 0.343842 51 62 0 8 0.172584 51 63 0 8 0.102041 51 65 0 8 0.10032 51 66 0 8 0.171626 51 68 0 8 0.0678152 51 69 0 8 0.149985 51 72 0 8 0.152543 51 73 0 8 0.25718 51 76 0 8 0.214593 52 61 0 8 0.443778 52 62 0 8 0.107136 52 63 0 8 0.158705 52 65 0 8 0.113282 52 66 0 8 0.312413 52 68 0 8 0.0700575 52 69 0 8 0.253252 52 72 0 8 0.226697 52 73 0 8 0.245926 52 75 0 8 0.0562757 52 76 0 8 0.20428 52 79 0 8 0.0714871 53 62 0 8 0.0917929 53 63 0 8 0.152875 53 65 0 8 0.126353 53 66 0 8 0.328638 53 68 0 8 0.0773025 53 69 0 8 0.248829 53 70 0 8 0.141155 53 72 0 8 0.198586 53 73 0 8 0.215842 53 75 0 8 0.0432622 53 76 0 8 0.153492 53 79 0 8 0.0495242 54 63 0 8 0.106659 54 65 0 8 0.136356 54 66 0 8 0.187831 54 68 0 8 0.0711825 54 69 0 8 0.139066 54 72 0 8 0.143861 54 73 0 8 0.112495 54 76 0 8 0.092742 54 79 0 8 0.0526408 55 64 0 8 0.114993 55 65 0 8 0.120711 55 66 0 8 0.127961 55 68 0 8 0.0639655 55 69 0 8 0.110898 55 72 0 8 0.112696 55 73 0 8 0.132583 55 76 0 8 0.119106 55 79 0 8 0.105725 56 65 0 8 0.125715 56 66 0 8 0.112589 56 68 0 8 0.0597528 56 72 0 8 0.110806 56 73 0 8 0.128003 57 66 0 8 0.185545 57 68 0 8 0.0740897 57 69 0 8 0.110713 57 70 0 8 0.10124 57 72 0 8 0.174667 57 73 0 8 0.263901 57 75 0 8 0.111695 57 76 0 8 0.177872 57 79 0 8 0.136586 58 68 0 8 0.0671494 58 69 0 8 0.13334 58 72 0 8 0.210195 58 73 0 8 0.35554 58 76 0 8 0.248137 58 79 0 8 0.145866 59 68 0 8 0.0681903 59 69 0 8 0.165192 59 70 0 8 0.11019 59 72 0 8 0.233952 59 73 0 8 0.393149 59 74 0 8 0.174277 59 75 0 8 0.162125 59 76 0 8 0.344901 59 77 0 8 0.187909 59 78 0 8 0.0830463 59 79 0 8 0.124734 59 80 0 8 0.106624 60 72 0 8 0.141055 61 70 0 8 0.0861496 61 72 0 8 0.198163 61 73 0 8 0.374979 61 75 0 8 0.0448804 61 76 0 8 0.225538 61 79 0 8 0.0771202 62 72 0 8 0.102114 62 73 0 8 0.215754 62 76 0 8 0.117393 63 72 0 8 0.136437 63 73 0 8 0.196674 63 74 0 8 0.022133 63 75 0 8 0.0216317 63 76 0 8 0.0998429 63 79 0 8 0.030582 65 76 0 8 0.051127 66 75 0 8 0.0315108 66 76 0 8 0.199353 66 77 0 8 0.0316967 66 78 0 8 0.0208651 66 79 0 8 0.0456586 66 80 0 8 0.0406843 67 76 0 8 0.0357863 69 79 0 8 0.0429125 70 79 0 8 0.0364273 70 80 0 8 0.033346 END