# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3g7gA	158	12.59		
1h7wA	1025	16.18	a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5	15683,28628,30324,30609,39007
2i3dA	249	24.04	c.69.1.36	147499
2b4gA	317	24.81	c.1.4.1	127829
1gteA	1025	25.15	a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5	70440,70441,70442,70443,70444
2r4vA	247	29.93		
1rdsA	105	33.44	d.1.1.4	36236
1h7xA	1025	36.85	a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5	15687,28632,30328,30613,39011
3keaA	285	37.95		
1moqA	368	40.35	c.80.1.1	35302
3lu2A	311	42.28		
2koeA	40	42.55		
3cztX	92	44.67		
1mtzA	293	45.62	c.69.1.7	79467
2eknA	159	46.56		
3n22A	98	46.73		
1dbgA	506	48.59	b.80.1.4	28033
1rtwA	220	48.63	a.132.1.3	97823
3d72A	149	49.05		
2w82A	165	49.10		
3f7sA	142	50.10		
2z73A	448	51.09		
3lnrA	175	51.54		
1g5cA	170	51.60	c.53.2.1	60264
1gxsB	158	56.68		
1dnv	437	63.36		
1sz6B	263	65.37	b.42.2.1,b.42.2.1	112172,112173
1u7nA	336	68.47	c.77.1.4	107726
3gl5A	239	68.94		
2wceA	95	69.83		
1o63A	219	70.30	c.94.1.1	92540
2w51A	158	71.69		
1vhvA	268	72.18	c.90.1.1	100704
1dj8A	89	79.53	a.57.1.1	17919
3dm8A	143	80.99	d.17.4.20	157804
2wtmA	251	81.05		
2zyhA	475	81.76		
3c8zA	414	86.14		
2vnfA	60	86.59	g.50.1.2	153333
3mhsA	476	88.70