# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3g7gA	158	11.54		
1h7wA	1025	20.25	a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5	15683,28628,30324,30609,39007
2b4gA	317	29.09	c.1.4.1	127829
1moqA	368	30.77	c.80.1.1	35302
2axcA	264	32.82		
2w82A	165	32.85		
2koeA	40	35.85		
3d72A	149	37.25		
1gteA	1025	37.70	a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5	70440,70441,70442,70443,70444
1g5cA	170	39.76	c.53.2.1	60264
2r4vA	247	41.24		
3keaA	285	43.75		
1o63A	219	43.90	c.94.1.1	92540
1vhvA	268	45.24	c.90.1.1	100704
2esnA	310	50.67	a.4.5.37,c.94.1.1	132333,132334
3f7sA	142	53.33		
1mtzA	293	53.69	c.69.1.7	79467
3lu2A	311	54.44		
3n22A	98	59.73		
1h7xA	1025	60.15	a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5	15687,28632,30328,30613,39011
1dnv	437	60.20		
1rtwA	220	60.63	a.132.1.3	97823
3cztX	92	60.74		
3lloA	143	69.65		
1rdsA	105	73.00	d.1.1.4	36236
1sz6B	263	75.95	b.42.2.1,b.42.2.1	112172,112173
3il4A	320	76.81		
2e6fA	314	77.70		
3dm8A	143	81.93	d.17.4.20	157804
1g19A	350	82.36	c.37.1.11,d.48.1.1	32284,38770
2wtmA	251	82.56		
2eknA	159	86.07		
2i3dA	249	86.13	c.69.1.36	147499
2w51A	158	87.24		
2z73A	448	89.09