# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1g71A	347	5.706	d.264.1.1	43268
1j53A	186	7.938	c.55.3.5	77076
2vgnA	386	12.08	b.38.4.1,c.55.4.2,d.79.3.2	153040,153041,153042
1y97A	238	12.29	c.55.3.5	122773
1mai	131	16.65		
2hxrA	238	18.45		
3l2bA	245	19.31		
2ec4A	178	21.51		
2i6tA	303	22.44		
1v33A	366	22.53	d.264.1.1	100278
1rypC	244	27.33	d.153.1.4	41934
1uw4B	248	29.24	a.118.1.14	100072
1eqnA	321	29.85	e.13.1.1	43256
1maiA	131	29.85	b.55.1.1	26951
3he0A	196	30.99		
3i1aA	339	34.52		
1qhhA	167	35.81	c.37.1.19	32393
1j54A	186	38.15	c.55.3.5	77077
3gt7A	154	40.02		
2guiA	194	40.74	c.55.3.5	135737
1wzzA	334	42.37	a.102.1.2	121536
3c18A	290	45.31		
1rypB	250	48.59	d.153.1.4	41933
2yykA	481	49.49		
3khtA	144	49.54		
2zd1A	557	50.23		
2cn5A	329	53.19		
2j6iA	364	55.72		
1a41	234	56.79		
1nfp	228	57.60		
1v2xA	194	59.37	c.116.1.1	100274
3mixA	382	60.75		
1xw5A	217	61.38	a.45.1.1,c.47.1.5	116099,116100
1fr1A	361	64.43	e.3.1.1	42734
1esmA	316	65.51	c.37.1.6	31953
1eu8A	409	68.15	c.94.1.1	59502
2cxhA	217	69.78	c.51.1.2	131005
3bkrA	126	71.53		
1iugA	352	72.65	c.67.1.3	90699
3lzhA	301	75.02		
1jxmA	301	79.28	b.34.2.1,c.37.1.1	67420,67421
1c7sA	858	80.38	b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1	21812,22408,29011,40410
1rl0A	255	81.31	d.165.1.1	111859
1kjwA	295	83.14	b.34.2.1,c.37.1.1	68643,68644
1t06A	235	83.29	a.118.1.17	106194
1rgyA	360	83.49	e.3.1.1	97456
3hamA	299	89.50