# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3fvcA	663	13.79		
2i61A	62	16.30		
3d72A	149	23.38		
2ohdA	151	27.55		
2pdrA	149	28.76		
2eknA	159	32.88		
1xk4C	113	33.11	a.39.1.2	122057
3c1vA	113	33.77	a.39.1.2	155867
2w51A	158	34.70		
2r8bA	251	36.97	c.69.1.14	151696
2debA	653	42.76		
1rdsA	105	43.15	d.1.1.4	36236
1psrA	100	45.51	a.39.1.2	17180
1hplA	449	45.54	b.12.1.2,c.69.1.19	23639,34787
2a6aA	218	48.21	c.55.1.9,c.55.1.9	126231,126232
2p0pA	126	48.46		
3n22A	98	49.77		
1ekrA	161	52.50	d.58.21.1	39380
2egdA	98	53.20		
2wtmA	251	56.46		
1ksoA	101	58.69	a.39.1.2	72926
1mtyD	512	62.39	a.25.1.2	16742
2go2A	163	67.09		
1dj8A	89	70.79	a.57.1.1	17919
1z72A	225	72.37	a.132.1.3	124583
3cztX	92	72.50		
3fsgA	272	73.59		
3m0wA	100	73.85		
1orjA	130	74.79	a.24.19.1	93456
1yy7A	213	75.12		
2iihA	157	76.28		
3h87C	73	80.49		
2wceA	95	83.51		
2z4tA	514	83.78		
1j93A	353	86.11	c.1.22.1	66454
2kl5A	110	87.81