# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2w00A	1038	1.337		
1mtyD	512	1.388	a.25.1.2	16742
1ux6A	350	2.140	b.29.1.16,g.75.1.1	100145,100146
2debA	653	2.352		
1qs0A	407	2.901	c.36.1.11	31829
3ifrA	508	3.290		
3bb0A	609	4.147		
2pdrA	149	8.043		
3iurA	693	8.579		
2idbA	505	11.01	b.45.1.3,d.333.1.1	137270,137271
1ni4A	365	11.19	c.36.1.11	85728
2hu5A	582	11.99	b.69.7.2,c.69.1.33	136763,136764
2bw4A	340	13.65	b.6.1.3,b.6.1.3	129320,129321
1sw2A	275	15.77	c.94.1.1	106064
4bcl	366	17.21		
3kqfA	265	18.03		
3eayA	323	18.42		
1hl9A	449	19.12	b.71.1.3,c.1.8.11	90650,90651
1at0A	145	19.69	b.86.1.1	28374
1at0	145	19.80		
1r7aA	504	20.03	b.71.1.1,c.1.8.1	97192,97193
1gpjA	404	21.62	a.151.1.1,c.2.1.7,d.58.39.1	65451,65452,65453
1ffyA	917	21.74	a.27.1.1,b.51.1.1,c.26.1.1	16926,26891,31593
1zy9A	564	22.17	b.30.5.11,c.1.8.13	125813,125814
3ef0A	372	22.57		
2c0hA	353	22.61	c.1.8.3	129594
1rtuA	114	22.93	d.1.1.4	36139
2aioA	269	26.89	d.157.1.1	126829
1mx0A	472	27.82	a.156.1.3,d.14.1.3,d.122.1.2	79618,79619,79620
2grvA	621	30.37		
2cmzA	423	30.77	e.76.1.2	146415
2c5uA	375	31.12		
3jszA	525	33.29		
1rtu	114	34.59		
1yc5A	246	34.62	c.31.1.5	122910
1yifA	533	34.64	b.29.1.23,b.67.2.1	123283,123284
3hvdA	548	35.64		
1odzA	386	37.72	c.1.8.3	86889
2gfhA	260	37.93	c.108.1.6	135096
3c86A	328	38.07		
3d72A	149	39.15		
3clqA	421	39.20		
3acpA	417	39.20		
2pnkA	428	39.31	c.1.9.8	149674
3f5lA	481	39.96		
2rjoA	332	40.21		
1lurA	339	41.95	b.30.5.4	84717
3i4cA	347	43.08		
3b9tA	484	43.38		
3cpxA	321	45.30		
2yw2A	424	45.45		
1eylA	186	48.06	b.42.4.1	25593
2eknA	159	48.82		
1g5hA	454	49.70	c.51.1.1,d.104.1.1	60270,60271
3eu9A	240	50.48		
1i84S	1184	50.49	i.15.1.1	61940
1uohA	226	51.56	d.211.1.1	99690
2waqA	880	52.72		
3g5wA	318	52.73		
3kebA	224	53.40		
1ylhA	560	56.13		
1wr8A	231	57.36	c.108.1.10	114836
2zqqA	272	57.73		
2p0pA	126	58.18		
2rfmA	192	58.21		
1xk4C	113	58.40	a.39.1.2	122057
2qgnA	322	59.90		
3ii1A	535	61.43		
1e43A	483	61.65	b.71.1.1,c.1.8.1	59217,59218
2qo3A	915	61.90		
3lsoA	489	62.03		
2xgjA	1010	62.03		
1rdsA	105	63.92	d.1.1.4	36236
2whmA	385	64.08		
2ppeA	343	65.86	b.6.1.3,b.6.1.3	149769,149770
3fpcA	352	66.99		
3d9hA	285	68.10		
3csyI	334	68.58		
1wl4A	397	68.68		
3dpcA	455	70.19		
1hplA	449	72.19	b.12.1.2,c.69.1.19	23639,34787
1qwkA	317	72.47	c.1.7.1	96482
3ighX	486	73.48		
2qwxA	231	74.66	c.23.5.3	151441
3cs1A	219	76.33		
3kpkA	434	76.84		
1uwvA	433	77.30	b.40.4.12,c.66.1.40	100128,100129
3eniA	365	77.65		
3g2eA	194	79.81		
3k1qD	412	81.54		
1flcA	432	83.42	b.19.1.3,c.23.10.2	23837,31337
2yzhA	171	83.47		
1ogiA	303	83.73	b.43.4.2,c.25.1.1	92914,92915
2c9hA	444	84.32		
2cduA	452	85.11		
2c4mA	796	86.61		
2cn3A	737	88.52		
2vktA	289	88.94		
1fnuA	221	89.45	b.40.2.2,d.15.6.1	25212,37801
3bg1B	442	89.47