# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3d72A	149	11.75		
2pdrA	149	13.20		
2eknA	159	16.42		
2ohdA	151	20.00		
2i61A	62	24.58		
3fvcA	663	27.66		
1ekrA	161	30.06	d.58.21.1	39380
2p0pA	126	33.33		
2iihA	157	33.77		
1xk4C	113	35.67	a.39.1.2	122057
1rdsA	105	37.83	d.1.1.4	36236
3bdrA	190	40.27		
2r8bA	251	40.39	c.69.1.14	151696
2w51A	158	51.66		
3c1vA	113	52.64	a.39.1.2	155867
2a6aA	218	57.37	c.55.1.9,c.55.1.9	126231,126232
3n22A	98	65.29		
1psrA	100	67.56	a.39.1.2	17180
2go2A	163	70.90		
1mtyD	512	71.04	a.25.1.2	16742
1qq5A	253	77.58	c.108.1.1	43327
3m0wA	100	79.34		
1yy7A	213	81.64		
1dj8A	89	85.99	a.57.1.1	17919
3ef0A	372	87.05		
2debA	653	87.20		
2egdA	98	88.84