# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2eknA	159	2.802		
2iihA	157	3.984		
3d72A	149	4.846		
2ny1A	317	5.114	d.172.1.1	145703
2eeyA	162	5.335		
2i61A	62	6.936		
3f9xA	166	7.681		
3lqaG	332	8.805		
2p0pA	126	9.777		
2a6aA	218	10.44	c.55.1.9,c.55.1.9	126231,126232
2ohdA	151	12.13		
1hxs1	302	14.30		
2ysrA	105	15.09		
2ebbA	101	15.91		
3eniA	365	16.03		
1z2cB	383	17.91	a.118.1.23	124377
1ic8A	194	18.20	a.4.1.1,a.35.1.1	76740,76741
3co1A	132	19.74		
2dxcB	157	22.09		
2w51A	158	22.16		
2pdrA	149	22.37		
3hveA	256	23.42		
2pd8A	149	23.45		
1g2rA	100	23.52	d.192.1.1	60231
2joxA	106	26.18		
3fusA	316	26.46		
1du3A	130	30.43	g.24.1.1,g.24.1.1,g.24.1.1	44927,44928,44929
1eu3A	210	30.62	b.40.2.2,d.15.6.1	25206,37795
3mglA	130	30.65		
1uh6A	100	31.85	d.15.1.1	99394
3lloA	143	31.91		
1juvA	193	32.72	c.71.1.1	90912
1f37A	110	33.97	c.47.1.11	33088
2f2uA	402	35.13		
1h2vC	771	38.46	a.118.1.14,a.118.1.14,a.118.1.14	76592,76593,76594
1xk4C	113	38.68	a.39.1.2	122057
3c8zA	414	41.46		
3ktaA	182	41.75		
2x18A	119	41.89		
1nltA	248	42.87	b.4.1.1,b.4.1.1,g.54.1.1	91963,91964,91965
3fk8A	133	43.32		
3fj1A	344	49.16		
1u1sA	82	50.90	b.38.1.2	119451
2ct0A	74	53.67		
3favB	94	54.40		
1k5nB	100	55.46	b.1.1.2	77268
1kw4A	89	56.86	a.60.1.2	73077
1ekrA	161	57.68	d.58.21.1	39380
1ofuX	119	59.67	c.37.1.22	86976
2bhwA	232	60.47		
1o26A	232	61.88	d.207.1.1	86566
1b35C	282	61.98		
1al21	302	62.10		
3bj5A	147	62.50		
2btiA	63	64.14		
1g5cA	170	64.82	c.53.2.1	60264
1rdsA	105	65.48	d.1.1.4	36236
3db5A	151	68.33		
3d4uB	74	69.89	g.9.1.3,g.9.1.3	157300,157301
3eojA	366	70.15		
2cpcA	113	70.93		
2rgtA	169	71.70		
3g1mA	236	72.41		
3cxgA	133	74.90		
3kq4A	393	77.92		
1qu7A	227	78.35	h.4.5.1	45789
1zlhB	75	79.97	g.9.1.3,g.9.1.3	144742,144743
3hbaA	334	80.54		
2wewA	172	80.81		
1pa7A	130	82.60	a.40.1.1	94410
1aym1	285	83.13		
2opcA	127	83.39		
2gtlN	220	84.43	b.61.7.1,g.12.1.1,h.1.32.1	135670,135671,135672
1r9oA	477	85.39	a.104.1.1	104878
1x93A	55	86.40	a.43.1.3	145859
1ar61	302	87.70		
3bw1A	96	87.70		
1ar71	302	87.96		
1bxyA	60	88.67	d.59.1.1	39525