# List of top-scoring protein chains for t2k-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3lqaG 332 1.01e-01 2gvkA 317 2.66e+00 d.58.4.14 135782 2eknA 159 2.90e+00 1i84S 1184 3.17e+00 1lvk i.15.1.1 61940 1uf3A 228 4.12e+00 d.159.1.6 99317 1yymG 313 4.40e+00 d.172.1.1 124232 2k47A 79 4.55e+00 1oltA 457 4.74e+00 c.1.28.2 93334 1x93A 55 8.67e+00 a.43.1.3 145859 2rdcA 153 8.87e+00 1gc1G 321 9.83e+00 1gc1G d.172.1.1 42493 2q7nA 488 9.88e+00 2v66B 111 1.11e+01 2px2A 269 1.13e+01 3ck6A 252 1.22e+01 3hhwA 87 1.37e+01 1co4A 42 1.46e+01 1co4A g.47.1.1 45347 3hxlA 446 1.61e+01 2dnxA 130 1.81e+01 1xk4C 113 1.91e+01 a.39.1.2 122057 2cqfA 63 1.99e+01 1awe 130 2.08e+01 1awe 2pyqA 114 2.12e+01 a.279.1.1 149953 1n3kA 130 2.13e+01 a.77.1.4 79965 1rzjG 321 2.31e+01 d.172.1.1 98200 2inpA 494 2.42e+01 2x10A 545 2.47e+01 1tkeA 224 2.51e+01 d.15.10.1,d.67.1.1 112470,112471 2koeA 40 2.66e+01 1r5sA 132 2.69e+01 f.50.1.1 111709 2z4tA 514 2.70e+01 2in0A 139 2.79e+01 2ny1A 317 2.81e+01 d.172.1.1 145703 1g9mG 321 2.83e+01 1gc1G d.172.1.1 42492 1ofcX 304 2.95e+01 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 2afpA 129 3.12e+01 2afpA d.169.1.1 42349 2o5gA 148 3.30e+01 a.39.1.5 148598 1zg2A 107 3.31e+01 2pkpA 170 3.39e+01 1waaA 93 3.40e+01 1n1cA 217 3.47e+01 a.184.1.1 85254 2p5mA 83 3.57e+01 d.74.2.1 149254 3d0oA 317 3.58e+01 2pbxA 203 3.73e+01 2gvhA 288 3.75e+01 d.38.1.1,d.38.1.1 135776,135777 2kuaA 170 3.81e+01 2ob9A 130 4.02e+01 3h0gI 113 4.14e+01 1u4qA 322 4.23e+01 a.7.1.1,a.7.1.1,a.7.1.1 113024,113025,113026 1u5pA 216 4.53e+01 a.7.1.1,a.7.1.1 113046,113047 3kypA 193 4.54e+01 1wouA 123 4.59e+01 c.47.1.16 109471 2e2wA 113 4.59e+01 1dvpA 220 4.84e+01 1dvpA a.118.9.2,g.50.1.1 19216,45358 1cll 148 4.97e+01 1cll 1fpzA 212 5.14e+01 1fpzA c.45.1.1 59976 2ohdA 151 5.18e+01 1f32A 149 5.31e+01 1f32A d.62.1.1 39539 1m2rA 327 5.32e+01 d.144.1.7 84760 1ik9A 213 5.35e+01 b.59.1.1,h.1.11.1 66176,66177 1wirA 121 5.37e+01 g.37.1.5 114679 2qihA 157 5.40e+01 3btiA 188 5.42e+01 a.4.1.9,a.121.1.1 155566,155567 3b8mA 280 5.50e+01 d.58.60.1 154961 1tit 98 5.53e+01 1tit 2qf7A 1165 5.57e+01 1l3yA 41 5.65e+01 g.3.11.6 73558 1tkiA 321 5.71e+01 1tkiA d.144.1.7 41638 3kvtA 115 5.71e+01 d.42.1.2 38642 1t33A 224 5.72e+01 a.4.1.9,a.121.1.1 106295,106296 2ganA 190 5.74e+01 d.108.1.1 134889 1jekB 36 5.75e+01 1jekB 2xdqB 511 5.77e+01 1qvtA 194 5.79e+01 a.4.1.9,a.121.1.1 104602,104603 3hqfA 181 5.95e+01 1zbdB 134 5.96e+01 1zbdB g.50.1.1 45359 1zroA 602 6.01e+01 a.264.1.1,a.264.1.1 125551,125552 2remA 193 6.10e+01 2wnsA 205 6.11e+01 1om1A 332 6.14e+01 d.144.1.7 93347 2bw3B 84 6.19e+01 a.270.1.1 129319 1tjlA 151 6.19e+01 a.2.14.1,g.39.1.13 107027,107028 2f9iB 285 6.23e+01 2od0A 105 6.27e+01 d.198.5.2 148732 3kn6A 325 6.27e+01 1tlyA 278 6.31e+01 f.4.6.1 107143 3br5A 194 6.50e+01 1xocA 520 6.51e+01 c.94.1.1 122201 2onfA 140 6.62e+01 d.227.1.1 148901 1lqyA 184 6.63e+01 d.167.1.1 74212 3eyxA 216 6.70e+01 2gwdA 449 6.81e+01 2ktrA 117 6.88e+01 2dktA 143 6.94e+01 g.89.1.1,g.93.1.1 146537,146538 2jm1A 141 6.99e+01 3br2A 194 7.15e+01 1p5sA 203 7.35e+01 a.40.1.1 94147 2zjtA 247 7.42e+01 3muqA 237 7.50e+01 2f3yA 148 7.60e+01 a.39.1.5 146994 1oe8A 211 7.70e+01 a.45.1.1,c.47.1.5 86905,86906 1p27B 106 7.84e+01 d.58.7.1 93908 2eqbB 97 7.93e+01 h.1.33.1 145120