# List of top-scoring protein chains for t2k-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1oltA 457 5.36e-01 c.1.28.2 93334 1e3dB 542 1.06e+00 1h2rL e.18.1.1 59189 1i2kA 269 1.30e+00 e.17.1.1 90661 1et0A 269 1.33e+00 1et0A e.17.1.1 43289 2i53A 258 1.65e+00 a.74.1.1,a.74.1.1 147505,147506 1frvB 536 2.48e+00 1h2rL e.18.1.1 43296 1jlvA 209 2.58e+00 a.45.1.1,c.47.1.5 71729,71730 2vdrA 452 2.63e+00 1txvA 452 2.66e+00 3gthA 337 2.72e+00 3gtiA 337 2.78e+00 3gtxA 339 2.83e+00 1ypxA 375 3.82e+00 3gtfA 337 4.04e+00 3fdkA 323 4.22e+00 2frvB 536 4.40e+00 1h2rL e.18.1.1 43291 2zc1A 333 4.42e+00 3gu1A 337 4.83e+00 3gu9A 331 4.90e+00 3htwA 328 4.93e+00 2z4tA 514 5.58e+00 2wlwA 165 7.52e+00 3gu2A 336 7.56e+00 2p4dA 172 9.00e+00 1awsA 164 9.04e+00 2cpl b.62.1.1 27431 1h2rL 534 9.09e+00 1h2rL e.18.1.1 43298 1awqA 164 9.24e+00 2cpl b.62.1.1 27461 2gwdA 449 9.49e+00 2nqoA 376 9.50e+00 d.153.1.6 138473 1dzlA 505 1.04e+01 1dzlA b.121.6.1 23586 1h2aL 567 1.08e+01 1h2rL e.18.1.1 43299 1yndA 165 1.12e+01 b.62.1.1 123721 2qmcA 377 1.13e+01 3do7A 296 1.19e+01 3k0mA 165 1.22e+01 2koeA 40 1.28e+01 2zuvA 759 1.34e+01 1amuA 563 1.35e+01 1amuA e.23.1.1 43351 1nfiA 301 1.36e+01 1a3qA b.1.18.1,b.2.5.3 21942,22455 2fmyA 220 1.49e+01 1edg 380 1.51e+01 1edg 1edgA 380 1.51e+01 c.1.8.3 28807 1wozA 177 1.54e+01 2phjA 251 1.55e+01 2wqkA 251 1.55e+01 1tw9A 206 1.67e+01 a.45.1.1,c.47.1.5 107381,107382 1ez4A 318 1.68e+01 c.2.1.5,d.162.1.1 64917,64918 1ldnA 316 1.73e+01 1hyhA c.2.1.5,d.162.1.1 30166,42133 3ksyA 1049 1.78e+01 3gmeA 549 1.80e+01 2db0A 253 1.87e+01 1ubkL 534 1.97e+01 e.18.1.1 88422 1wuiL 534 1.97e+01 e.18.1.1 121289 2pm7A 399 1.97e+01 1ah7 245 2.13e+01 1ah7 1ah7A 245 2.13e+01 a.124.1.1 19339 3cuzA 532 2.21e+01 1dcoA 104 2.34e+01 1dcpA d.74.1.1 39680 1e0tA 470 2.42e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 2x2dB 165 2.47e+01 2gvkA 317 2.48e+01 d.58.4.14 135782 1fpzA 212 2.61e+01 1fpzA c.45.1.1 59976 1qvtA 194 2.65e+01 a.4.1.9,a.121.1.1 104602,104603 2x2aA 165 2.66e+01 1iknA 286 2.66e+01 1a3qA b.1.18.1,b.2.5.3 21936,22449 1ru0A 105 2.79e+01 d.74.1.1 111937 3dkbA 390 2.81e+01 3h3xQ 549 2.82e+01 2x25B 169 2.82e+01 3d0oA 317 2.84e+01 3bxjA 507 2.87e+01 2vfjA 366 2.87e+01 3ipqA 283 2.88e+01 3kucB 81 2.91e+01 3dnhA 258 2.97e+01 2yzsA 315 3.00e+01 3bevA 274 3.07e+01 2kuaA 170 3.14e+01 2fxqA 264 3.14e+01 2x10A 545 3.15e+01 1ymkA 175 3.16e+01 c.46.1.1 123699 1jt6A 188 3.23e+01 a.4.1.9,a.121.1.1 67247,67248 3g87A 394 3.27e+01 1q6zA 528 3.42e+01 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 1tit 98 3.50e+01 1tit 2acvA 463 3.56e+01 c.87.1.10 146047 1vkxA 273 3.57e+01 1a3qA b.1.18.1,b.2.5.3 21941,22454 2wbfX 265 3.59e+01 1u55A 188 3.66e+01 d.278.1.1 107677 2qklA 127 3.69e+01 3dzvA 273 3.73e+01 1jbjA 186 3.76e+01 b.1.1.4,b.1.1.4 66482,66483 1g5cA 170 3.79e+01 1g5cA c.53.2.1 60264 2a97A 439 3.85e+01 2a2kA 175 3.85e+01 3bb1A 274 3.88e+01 2oerA 214 3.89e+01 3canA 182 3.90e+01 2jesA 503 3.90e+01 2ewdA 317 3.92e+01 2o4vA 411 3.92e+01 2vu9A 444 4.00e+01 2aclB 244 4.04e+01 a.123.1.1 144801 3exaA 322 4.11e+01 3gy9A 150 4.11e+01 2ob9A 130 4.13e+01 1qb0A 211 4.17e+01 1c25 c.46.1.1 32699 2hujA 140 4.19e+01 a.24.26.1 136777 3k1qI 639 4.23e+01 3dclA 284 4.29e+01 1a22B 238 4.30e+01 1axiB b.1.2.1,b.1.2.1 22003,22004 3btiA 188 4.30e+01 a.4.1.9,a.121.1.1 155566,155567 1yviA 149 4.31e+01 a.24.10.2 124099 3cm3A 176 4.37e+01 2a8aA 439 4.38e+01 3ck6A 252 4.38e+01 3abaA 403 4.41e+01 3bqzA 194 4.42e+01 1guaB 81 4.51e+01 1c1yB d.15.1.5 37619 2q4fA 149 4.53e+01 a.24.10.2 139847 3fdhA 499 4.55e+01 2ijmA 281 4.64e+01 d.144.1.7 147714 3lahA 188 4.70e+01 1sgoA 139 4.71e+01 d.82.3.1 98857 3br2A 194 4.75e+01 2hb5A 164 4.75e+01 3g1qA 450 4.82e+01 3eyxA 216 4.89e+01 3h1wA 393 4.89e+01 2kllA 161 4.98e+01 3gw9A 450 5.03e+01 2gwgA 350 5.05e+01 c.1.9.15 135805 1xiwB 79 5.08e+01 b.1.1.4 115368 2wk6A 482 5.11e+01 1sb2A 133 5.14e+01 d.169.1.1 118927 3a0oA 776 5.15e+01 3br3A 194 5.23e+01 2oyrA 258 5.25e+01 c.66.1.55 149078 2wfpA 394 5.32e+01 1xeaA 323 5.34e+01 c.2.1.3,d.81.1.5 109572,109573 3ilhA 146 5.34e+01 1jmeA 455 5.36e+01 a.104.1.1 66885 2ah6A 208 5.38e+01 2raaA 204 5.38e+01 2fnaA 357 5.39e+01 a.4.5.11,c.37.1.20 133809,133810 2o9pA 454 5.41e+01 1yymG 313 5.44e+01 d.172.1.1 124232 1bfd 528 5.49e+01 1bfd 1xk4C 113 5.49e+01 a.39.1.2 122057 3i24A 149 5.53e+01 2px2A 269 5.67e+01 1qupA 222 5.74e+01 1qupA b.1.8.1,d.58.17.1 22301,39352 3bk2A 562 5.75e+01 3hf2A 482 5.75e+01 2e56A 144 5.81e+01 2bemA 170 5.90e+01 b.1.18.2 116698 2zdsA 340 5.95e+01 1awe 130 6.00e+01 1awe 3eheA 313 6.01e+01 3fc6B 266 6.16e+01 3br5A 194 6.41e+01 2igvA 173 6.42e+01 b.62.1.1 147667 2qcuA 501 6.56e+01 3dn7A 194 6.56e+01 2ajrA 331 6.63e+01 c.72.1.1 126892 1gqiA 708 6.68e+01 c.1.8.10,d.92.2.2 76279,76280 2gerA 321 6.77e+01 1vppV 102 6.77e+01 1vpfA g.17.1.1 44753 3kudB 81 6.77e+01 1p1jA 533 6.90e+01 c.2.1.3,d.81.1.3 87687,87688 2p5mA 83 6.96e+01 d.74.2.1 149254 3l2nA 395 6.98e+01 1mp8A 281 6.99e+01 d.144.1.7 91384 2qugA 394 7.08e+01 1t8hA 277 7.10e+01 d.194.1.2 106664 2fsvA 384 7.15e+01 c.2.1.4,c.23.12.2 134037,134038 3e5jA 403 7.15e+01 1xqoA 256 7.17e+01 a.96.1.6 115853 3cxmA 268 7.17e+01 5cytR 104 7.17e+01 1ycc a.3.1.1 15878 1p5sA 203 7.22e+01 a.40.1.1 94147 1ux5A 411 7.25e+01 a.207.1.1 100144 2b69A 343 7.29e+01 c.2.1.2 127974 3kn6A 325 7.29e+01 1p27B 106 7.44e+01 d.58.7.1 93908 3lwsA 357 7.58e+01