# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3lqaG 332 2.16e-01 1floA 422 6.20e-01 1floA a.60.9.1,d.163.1.1 18106,42166 1yymG 313 2.73e+00 d.172.1.1 124232 1tkeA 224 2.83e+00 d.15.10.1,d.67.1.1 112470,112471 3h4rA 265 3.71e+00 3h0gI 113 4.77e+00 2fxqA 264 6.23e+00 3eyxA 216 6.71e+00 2gvkA 317 7.44e+00 d.58.4.14 135782 1ekjA 221 7.44e+00 1ekjB c.53.2.1 33364 3bwgA 239 7.77e+00 a.4.5.6,d.190.1.2 155693,155694 1uf3A 228 7.98e+00 d.159.1.6 99317 2z4iA 233 9.80e+00 2eknA 159 1.03e+01 1jbjA 186 1.41e+01 b.1.1.4,b.1.1.4 66482,66483 1t4wA 196 1.60e+01 b.2.5.2 106427 2ohdA 151 1.79e+01 1w7jB 151 1.82e+01 a.39.1.5 120690 1f32A 149 1.90e+01 1f32A d.62.1.1 39539 2qihA 157 2.25e+01 3hvqC 170 2.41e+01 1qf6A 642 2.52e+01 1qf6A c.51.1.1,d.15.10.1,d.67.1.1,d.104.1.1 33210,39551,39562,40759 3h0gA 1752 2.59e+01 3abhA 312 2.68e+01 2afpA 129 3.12e+01 2afpA d.169.1.1 42349 2basA 431 3.13e+01 c.1.33.1,d.110.6.2 128244,128245 2w5yA 192 3.15e+01 1rzjG 321 3.31e+01 d.172.1.1 98200 1extA 162 3.38e+01 1extA g.24.1.1,g.24.1.1,g.24.1.1 44900,44901,44902 1aym1 285 3.46e+01 1aym1 1l3aA 228 3.58e+01 d.18.1.2 73531 1gc1G 321 3.65e+01 1gc1G d.172.1.1 42493 2rfjA 120 3.70e+01 1oltA 457 3.76e+01 c.1.28.2 93334 3kypA 193 3.78e+01 1g9mG 321 3.80e+01 1gc1G d.172.1.1 42492 2kuaA 170 3.87e+01 2o8jA 281 3.93e+01 2hrvA 142 4.00e+01 2hrvA b.47.1.4 26429 1fpzA 212 4.00e+01 1fpzA c.45.1.1 59976 2cqfA 63 4.00e+01 2zzdB 157 4.10e+01 1ku1A 230 4.27e+01 a.118.3.1 72996 2ny1A 317 4.28e+01 d.172.1.1 145703 1auvA 311 4.37e+01 1auvA c.30.1.5,d.142.1.3 31723,41558 3bb1A 274 4.37e+01 2xdvA 442 4.46e+01 2v66B 111 4.46e+01 2dxcB 157 4.47e+01 3exaA 322 4.47e+01 2jm1A 141 4.50e+01 2od0A 105 4.50e+01 d.198.5.2 148732 2fnaA 357 4.51e+01 a.4.5.11,c.37.1.20 133809,133810 1xl4A 301 4.62e+01 b.1.18.16,f.14.1.1 115430,115431 2q7nA 488 4.66e+01 2h62A 114 4.68e+01 g.17.1.2 136177 2bidA 197 4.72e+01 2bidA f.1.4.1 43398 3d55A 91 4.75e+01 3m9lA 205 4.79e+01 1v7mV 163 4.81e+01 a.26.1.2 100458 2zjtA 247 4.96e+01 2dokA 186 5.01e+01 2pmzC 392 5.30e+01 3e5jA 403 5.37e+01 1awe 130 5.47e+01 1awe 1p5sA 203 5.50e+01 a.40.1.1 94147 1a22B 238 5.53e+01 1axiB b.1.2.1,b.1.2.1 22003,22004 1ofwA 296 5.54e+01 a.138.1.1 92850 3d0oA 317 5.61e+01 2eeyA 162 5.62e+01 3eo8A 219 5.71e+01 3br5A 194 5.80e+01 3k5kA 283 5.95e+01 2hwwA 181 6.15e+01 1zhhB 242 6.23e+01 d.110.6.3 144740 1qvtA 194 6.56e+01 a.4.1.9,a.121.1.1 104602,104603 2ayuA 417 6.79e+01 d.305.1.1 127571 2conA 79 6.98e+01 g.41.15.1 130680 3bqzA 194 6.99e+01 1jk0B 345 7.05e+01 a.25.1.2 63143 2d27A 149 7.13e+01 d.52.10.1 146449 1gh6A 114 7.13e+01 a.2.3.1 65191 1jk8B 190 7.27e+01 1iakB b.1.1.2,d.19.1.1 63147,63148 1gvnB 287 7.27e+01 c.37.1.21 76354 3br3A 194 7.44e+01 1dbhA 354 7.58e+01 1awe a.87.1.1,b.55.1.1 18514,26967 3btiA 188 7.62e+01 a.4.1.9,a.121.1.1 155566,155567 1o7kA 131 7.63e+01 d.189.1.1 81144 3iu1A 383 7.88e+01 2gvhA 288 7.99e+01 d.38.1.1,d.38.1.1 135776,135777