a2m2html output for tmp.a2m

Citations (SAM, SAM-T99, HMMs)

R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting remote protein homologies, Bioinformatics 14(10):846-856, 1998.
A. Krogh et al., Hidden Markov models in computational biology: Applications to protein modeling, JMB 235:1501-1531, Feb 1994.

Sequence numbers correspond to the following labels:

- T0642
- T0642

              10        20        30        40        50        60     
              |         |         |         |         |         |     
   1 MDEARCASPERSTERRIFICNEWSYESTERDAYWERELEASEDTHELASTSEQINTHENINTHCA
   2 MDEARCASPERSTERRIFICNEWSYESTERDAYWERELEASEDTHELASTSEQINTHENINTHCA


         70        80        90       100       110       120       130
         |         |         |         |         |         |         |
   1 SPPLEASEGETRESTEDANDLETASSESSMENTDETERMINETHEESTSCIENTIFICCENTERS
   2 SPPLEASEGETRESTEDANDLETASSESSMENTDETERMINETHEESTSCIENTIFICCENTERS


             140       150       160       170       180       190     
              |         |         |         |         |         |     
   1 THISTARGETISDIFFERENTANDHASVERYSPECIFICSHAPEWILLCHECKITATTHEMEETI
   2 THISTARGETISDIFFERENTANDHASVERYSPECIFICSHAPEWILLCHECKITATTHEMEETI


        200       210       220       230       240       250       260
         |         |         |         |         |         |         |
   1 NGINPACIFICGRVEHAHALASTWCFINALISTSITALYANDFRANCEWEREELIMINATEDINP
   2 NGINPACIFICGRVEHAHALASTWCFINALISTSITALYANDFRANCEWEREELIMINATEDINP


             270       280       290       300       310       320     
              |         |         |         |         |         |     
   1 RELIMINARYMATCHESSPAINWINAGAINSTNETHERLANDSINFINALINTERESTINGENDI
   2 RELIMINARYMATCHESSPAINWINAGAINSTNETHERLANDSINFINALINTERESTINGENDI


        330       340       350       360       370       380       
         |         |         |         |         |         |       
   1 NGHAVEANICEFALLMERRYCHRISTMASANDHAPPYNEWYEARTAKEITEASYANDSMILE
   2 NGHAVEANICEFALLMERRYCHRISTMASANDHAPPYNEWYEARTAKEITEASYANDSMILE